Metagenome / Metatranscriptome Family F100923

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100923
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	87 residues
Representative Sequence	MTRGLGRIPAIRGTLTQARDEPGSDMPAGRDTPAPGQTGHMAEGNSGQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREHRAE
Number of Associated Samples	67
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	90.20 %
% of genes near scaffold ends (potentially truncated)	35.29 %
% of genes from short scaffolds (< 2000 bps)	78.43 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.961 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.000 % of family members)
Environment Ontology (ENVO)	Unclassified (65.686 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04075	F420H2_quin_red	8.82
PF00106	adh_short	2.94
PF00201	UDPGT	2.94
PF13581	HATPase_c_2	2.94
PF00291	PALP	2.94
PF13191	AAA_16	1.96
PF06441	EHN	1.96
PF13977	TetR_C_6	1.96
PF13432	TPR_16	0.98
PF03795	YCII	0.98
PF02909	TetR_C_1	0.98
PF03551	PadR	0.98
PF08281	Sigma70_r4_2	0.98
PF00486	Trans_reg_C	0.98
PF08327	AHSA1	0.98
PF01061	ABC2_membrane	0.98
PF03704	BTAD	0.98
PF13424	TPR_12	0.98
PF05958	tRNA_U5-meth_tr	0.98
PF11716	MDMPI_N	0.98
PF12840	HTH_20	0.98
PF07517	SecA_DEAD	0.98
PF14065	Pvc16_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	5.88
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	1.96
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.98
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.98
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	0.98
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.98
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.98
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
All Organisms	root	All Organisms	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
cellular organisms	root	All Organisms → cellular organisms	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.14 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.25 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.90 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.90 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	2.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.96 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.96 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	2.94 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.96 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	1.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Kineosporia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	2.94 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.96 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.98 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.98 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.98 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
unclassified Kineosporia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia → unclassified Kineosporia	2.94 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.96 %
Nocardia speluncae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia speluncae	0.98 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	0.98 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.98 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Kineosporia sp. R_H_3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia → unclassified Kineosporia → Kineosporia sp. R_H_3	2.94 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.96 %
Rhodococcus sp. MTM3W5.2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. MTM3W5.2	0.98 %
Nocardia speluncae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia speluncae	0.98 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.98 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100971176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1418	Open in IMG/M
3300005332\|Ga0066388_102836331	Not Available	885	Open in IMG/M
3300005363\|Ga0008090_15900326	Not Available	1018	Open in IMG/M
3300005436\|Ga0070713_100364086	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300005764\|Ga0066903_100076712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4327	Open in IMG/M
3300005764\|Ga0066903_100453845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2144	Open in IMG/M
3300005764\|Ga0066903_101559920	Not Available	1250	Open in IMG/M
3300005764\|Ga0066903_101797445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1171	Open in IMG/M
3300005764\|Ga0066903_101823702	Not Available	1163	Open in IMG/M
3300005764\|Ga0066903_103557503	Not Available	839	Open in IMG/M
3300006755\|Ga0079222_10238054	Not Available	1132	Open in IMG/M
3300006755\|Ga0079222_11059659	Not Available	706	Open in IMG/M
3300006804\|Ga0079221_10041320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2018	Open in IMG/M
3300006804\|Ga0079221_10161866	Not Available	1184	Open in IMG/M
3300006804\|Ga0079221_10212149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1070	Open in IMG/M
3300006804\|Ga0079221_10269224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	980	Open in IMG/M
3300006806\|Ga0079220_10017088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2977	Open in IMG/M
3300006854\|Ga0075425_100040188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	5220	Open in IMG/M
3300006904\|Ga0075424_100132306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2639	Open in IMG/M
3300006954\|Ga0079219_10094994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1446	Open in IMG/M
3300006954\|Ga0079219_10949851	Not Available	704	Open in IMG/M
3300010358\|Ga0126370_12176016	Not Available	546	Open in IMG/M
3300010360\|Ga0126372_11109849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. MTM3W5.2	810	Open in IMG/M
3300010379\|Ga0136449_103836805	Not Available	565	Open in IMG/M
3300010398\|Ga0126383_10336920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1523	Open in IMG/M
3300010398\|Ga0126383_13028194	Not Available	549	Open in IMG/M
3300012971\|Ga0126369_11395140	Not Available	791	Open in IMG/M
3300012971\|Ga0126369_12338477	Not Available	621	Open in IMG/M
3300015371\|Ga0132258_12415052	Not Available	1316	Open in IMG/M
3300015373\|Ga0132257_102842860	Not Available	631	Open in IMG/M
3300016319\|Ga0182033_10258058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1419	Open in IMG/M
3300016319\|Ga0182033_10821911	Not Available	820	Open in IMG/M
3300016319\|Ga0182033_11724258	Not Available	568	Open in IMG/M
3300016404\|Ga0182037_10087199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2209	Open in IMG/M
3300016404\|Ga0182037_10501450	Not Available	1018	Open in IMG/M
3300021560\|Ga0126371_10228924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1966	Open in IMG/M
3300021560\|Ga0126371_11519243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	797	Open in IMG/M
3300027725\|Ga0209178_1061065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1219	Open in IMG/M
3300027775\|Ga0209177_10225480	Not Available	680	Open in IMG/M
3300031543\|Ga0318516_10133087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1423	Open in IMG/M
3300031543\|Ga0318516_10191277	Not Available	1180	Open in IMG/M
3300031543\|Ga0318516_10241371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1045	Open in IMG/M
3300031544\|Ga0318534_10009363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	4852	Open in IMG/M
3300031544\|Ga0318534_10017216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia speluncae	3771	Open in IMG/M
3300031545\|Ga0318541_10225507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1039	Open in IMG/M
3300031546\|Ga0318538_10025223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2710	Open in IMG/M
3300031546\|Ga0318538_10196309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1077	Open in IMG/M
3300031546\|Ga0318538_10834888	Not Available	501	Open in IMG/M
3300031549\|Ga0318571_10053131	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300031561\|Ga0318528_10012849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	3854	Open in IMG/M
3300031561\|Ga0318528_10669792	Not Available	556	Open in IMG/M
3300031564\|Ga0318573_10397654	Not Available	740	Open in IMG/M
3300031564\|Ga0318573_10796384	Not Available	508	Open in IMG/M
3300031572\|Ga0318515_10185115	Not Available	1114	Open in IMG/M
3300031573\|Ga0310915_10978658	Not Available	591	Open in IMG/M
3300031640\|Ga0318555_10049079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2134	Open in IMG/M
3300031640\|Ga0318555_10311465	Not Available	852	Open in IMG/M
3300031680\|Ga0318574_10169693	Not Available	1246	Open in IMG/M
3300031680\|Ga0318574_10355879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	854	Open in IMG/M
3300031682\|Ga0318560_10057685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia → unclassified Kineosporia → Kineosporia sp. R_H_3	1929	Open in IMG/M
3300031713\|Ga0318496_10043398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2313	Open in IMG/M
3300031713\|Ga0318496_10074233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia → unclassified Kineosporia → Kineosporia sp. R_H_3	1795	Open in IMG/M
3300031719\|Ga0306917_10236114	Not Available	1397	Open in IMG/M
3300031724\|Ga0318500_10068217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia → unclassified Kineosporia → Kineosporia sp. R_H_3	1556	Open in IMG/M
3300031744\|Ga0306918_10414915	Not Available	1050	Open in IMG/M
3300031747\|Ga0318502_10001361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8907	Open in IMG/M
3300031747\|Ga0318502_10328824	Not Available	902	Open in IMG/M
3300031747\|Ga0318502_10567277	Not Available	682	Open in IMG/M
3300031748\|Ga0318492_10143093	Not Available	1202	Open in IMG/M
3300031778\|Ga0318498_10007594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4241	Open in IMG/M
3300031778\|Ga0318498_10066285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1618	Open in IMG/M
3300031780\|Ga0318508_1024278	Not Available	1497	Open in IMG/M
3300031782\|Ga0318552_10191146	Not Available	1035	Open in IMG/M
3300031797\|Ga0318550_10331003	Not Available	738	Open in IMG/M
3300031798\|Ga0318523_10139761	Not Available	1201	Open in IMG/M
3300031819\|Ga0318568_10039690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2675	Open in IMG/M
3300031832\|Ga0318499_10080508	Not Available	1247	Open in IMG/M
3300031845\|Ga0318511_10286689	Not Available	743	Open in IMG/M
3300031860\|Ga0318495_10473983	Not Available	548	Open in IMG/M
3300031879\|Ga0306919_10037893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3103	Open in IMG/M
3300031893\|Ga0318536_10020075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3018	Open in IMG/M
3300031894\|Ga0318522_10040571	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300031896\|Ga0318551_10051786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2072	Open in IMG/M
3300031910\|Ga0306923_11223527	Not Available	801	Open in IMG/M
3300031912\|Ga0306921_10011203	All Organisms → cellular organisms → Bacteria	9583	Open in IMG/M
3300031942\|Ga0310916_11080438	Not Available	667	Open in IMG/M
3300031945\|Ga0310913_10195125	Not Available	1413	Open in IMG/M
3300031954\|Ga0306926_10194942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2514	Open in IMG/M
3300031954\|Ga0306926_11728327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	713	Open in IMG/M
3300031981\|Ga0318531_10123431	Not Available	1150	Open in IMG/M
3300032010\|Ga0318569_10390278	Not Available	649	Open in IMG/M
3300032010\|Ga0318569_10627938	Not Available	500	Open in IMG/M
3300032041\|Ga0318549_10047185	Not Available	1766	Open in IMG/M
3300032044\|Ga0318558_10048181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1875	Open in IMG/M
3300032044\|Ga0318558_10625766	Not Available	538	Open in IMG/M
3300032063\|Ga0318504_10073892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1485	Open in IMG/M
3300032076\|Ga0306924_10260494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1992	Open in IMG/M
3300032076\|Ga0306924_10717695	Not Available	1121	Open in IMG/M
3300032091\|Ga0318577_10301896	Not Available	766	Open in IMG/M
3300032261\|Ga0306920_100846072	Not Available	1340	Open in IMG/M
3300032261\|Ga0306920_102539837	Not Available	704	Open in IMG/M
3300032783\|Ga0335079_10094998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3380	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.08%
Host-Associated	Host-Associated	3.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.08%
Plants	Host-Associated → Plants	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.27%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	65.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	50.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	10.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1009711761	3300005332	Tropical Forest Soil	MTRGLGRIPAIRGTLTQLRDEPGSDMPAGRDTPAPGQTGHMAEGNSGQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREPRAE*
Ga0066388_1028363311	3300005332	Tropical Forest Soil	MTRGLGRIPAIRGTLTDTRDEPGSDIPAGRDAPGQGQTGHMAEVNSGQGTMTGSAPGRRNAGLAPGALGWPWHPRRLATARHREHRAE*
Ga0008090_159003262	3300005363	Tropical Rainforest Soil	MTRGLGRIPAIRGTLTQARDEPGSDMPAGRDTPAPGQTGHMAEGNSGQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREHRAE*
Ga0070713_1003640862	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTRGLGRIPAIRGALAQARNEPGSDMSAGRDTPAPGQTGHLAEGNSSQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREHLAE*
Ga0066903_1000767125	3300005764	Tropical Forest Soil	MARRLGRISPVRGTVTQARDKAGNDIFAGRYTPASGRTGRPAEGTVGRGTAEGSPPSRRRRGLAPDVLGWPWHPRRLATARHREQRVA*
Ga0066903_1004538451	3300005764	Tropical Forest Soil	MTRGLGRIPAIRGTLTEARDEPGSDMPTGRDTPAPGHAGHMAEGKSGQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREHQAE*
Ga0066903_1015599202	3300005764	Tropical Forest Soil	LPWDRCERGALMTKGLGRIPHIRGTLRQAHDEAGNDMSAGRHTPASGRTGYPAEGTGSQGTGEGSPPGRRSPGLAPDVLGWPWHPRRLATARHREDGVA*
Ga0066903_1017974452	3300005764	Tropical Forest Soil	MSKGLGRIPSIRGTLTQARELGNDTSADRDTPARSPVGHPAKGTSGQGTRTGSPPGRRGSGLAPGALGWPWHPRQLATARHRGHGGAQSS*
Ga0066903_1018237024	3300005764	Tropical Forest Soil	MTRGLGRIPAIRDTVAQARGEPGSGMPAGRCTPAPGRTSDPAEGTAGQATKTGSAPGRRNSGLAPGALGWPWHPRRLATARHAEYRAEQCS*
Ga0066903_1035575032	3300005764	Tropical Forest Soil	MTRGLGRIPAIRGIFPHARDEPGSEMPAGRDAPAPGQTCHMAEGNSGQDTLTGSAPGRRNPGLAPGALGWPWHPRRLATAQHRGHRVE*
Ga0079222_102380542	3300006755	Agricultural Soil	MTKGLGRIPAIRGTLTQARDETGNDMPAGRDTPAPGRTRHRAKETSGQGARAGSAPGRQSPGLAPGALGWPWHPRRLATARHGKHQGA*
Ga0079222_110596592	3300006755	Agricultural Soil	MTRGLGRIPAIGGTLTQACDETGNDMPAGRDTPAPDPAGDPANGTSGPGTKPDSAPCRRNRGLAPGVLGWPWHPRRLATAQHRGYEAGQLS*
Ga0079221_100413202	3300006804	Agricultural Soil	MAKGLGRMPSIRGTLTQACEPGNDAPADRDPPAPGLSGHPAKGTSGQGSRTGSPPGRRGPGLAPGALGWPWHPRQLATARHRGHGAA*
Ga0079221_101618661	3300006804	Agricultural Soil	MTRGLGRIPAIGGTLTQACDETGNDMPAGRDTPAPDPAGDPANGTSGPGTKPDSAPCRRNRGLAPGVLGWPWHPRRLATAQHRGYEAGQWS*
Ga0079221_102121492	3300006804	Agricultural Soil	MTRGLGRIPAIRSTVPQARNQPGSGIAAGRDTPAPGQAGCPADGDRGQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHRGHRVE*
Ga0079221_102692242	3300006804	Agricultural Soil	MTRGLGRIPAIRGTLTQARNEPGSDMSAGRDTPAPGQTGHLAEGNSSQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREHLAE*
Ga0079220_100170883	3300006806	Agricultural Soil	MAKGLGRIPSIRGALAQACEPGNDARADRDAPAPGLSGHPAKGTSGQGSRTGSPPGRRGPGLAPGALGWPWHPRQLATARHRGHGAA*
Ga0075425_1000401881	3300006854	Populus Rhizosphere	MAKGLGRIPSIRGTLTQACEPGNDAPADRDAPAPGLSGHPAKGTSGQGSRTGSPPGRRGPGLAPGALGWPWHPRQLATARHRGHGAA*
Ga0075424_1001323064	3300006904	Populus Rhizosphere	MAKGLGRIPSIRGTLTQACEPGNDAPADRDAPAPGLSGHPAKGTSGQGSRTGSPPGRRGLGLAPGALGWPWHPRQLATARHRGHGAA*
Ga0079219_100949942	3300006954	Agricultural Soil	MAKGLGRIPSIRGTLTQACEPGNDAPADRDPPAPGLSGHPAKGTSGQGSRTGSPPGRRGPGLAPGALGWPWHPRQLATARHRGHGAA*
Ga0079219_109498512	3300006954	Agricultural Soil	MTKGLGRIPAIRGTLTQARDETGNDMPAGRDTPAPGRTRHRAKGTSGQGARAGSAPGRQSPGLAPGALGWPWHPRRLATARHGKHQGA*
Ga0126370_121760161	3300010358	Tropical Forest Soil	MTRGLGRIPAIRGTHTQARDEPGSDMRAGRDTSAPGRTGHMAEGNSGQGTMTGSAPGRRNPGLAPGALGWSWYPRRLATA
Ga0126372_111098491	3300010360	Tropical Forest Soil	MTKGLGRIPSITGALTQARDEPGNDMPASRCTPAPGRTSHPAEGASGQGTSTGSAPGRRNPGLAPGALGWPWHPRRLATARHCGPPEA*
Ga0136449_1038368051	3300010379	Peatlands Soil	MTRGLGRIPPIRGTLTQARDEADTDISAGRCMTAPGRTGHPAEGTSGQGTRTGSLSGRRSPGLAPGALGWPWHPRRLATAQ
Ga0126383_103369204	3300010398	Tropical Forest Soil	MTRGLGRIPAIMGTVRHAHSEPGSDMPAGRDTPAPAQAGYAAEGNPGEDAMTGAAPGRRNAGLAPGALGWPWHPRRLATARHGGHRVE*
Ga0126383_130281941	3300010398	Tropical Forest Soil	MTKGLGRIPSIRGTLTQAREPGNDTPADRDSPAPSPAGHLEKTASGQGTRTGSPPGRRGSGLAPGALGWPWHPRQLATARHRGHGGAQSS*
Ga0126369_113951401	3300012971	Tropical Forest Soil	MTKGLGRIPSIRGTLTQAREPGNDAPADRDTPAPGPAGHPAKGTSGQGRTGSPPGRRGSGLAPGALGWPWHPRQLATARHRGHGGA*
Ga0126369_123384772	3300012971	Tropical Forest Soil	MTRGLGRIPAIRGTVTQAPGEPGSDMPAGRCPPAPGRTSDPAEGTAGQATKTGSAPGRRNSGLAPGALGWPWHPRRLATARHAEYRAEQCS*
Ga0132258_124150522	3300015371	Arabidopsis Rhizosphere	MTKGLGRIPAIRGTLTQARDETGNDMPAGRDTPAPGRTAHAAKETSAQGARAGAASARQSPGLAPGALGWPWHPRRLATARHRGHQGEQSS*
Ga0132257_1028428601	3300015373	Arabidopsis Rhizosphere	MAKGLGRIPSIRGTLTQACEPGNDAPADRDPPAPGLSGHPAKGTSGQGSRTGSPPGRRGSGLAPGALGWPWHPRQLATARHR
Ga0182033_102580581	3300016319	Soil	MTRGLGRIPAIRGTIRRARNEPGSEIPAGTGTPAPGQTGHMVEGNSGQGAMTGSAPGRRSGGLAPGALGWPWHPRGLATARQRGHR
Ga0182033_108219113	3300016319	Soil	GVIAATSHACPGTAASEGLMTRGLGKIPSIRGSLTQARDEAGDDIAADSVGPAPGRTGHPTEETSGQGTREGLPSGRRSPGLAPGTLGWPWHPRRLATARHRGHEGA
Ga0182033_117242581	3300016319	Soil	MTRGLGRIPLIRGTLTQACDEVGTGMSAGRDKPAPGRVGHLAEGTSGQGTGTGSAPGRRNPGLAPGALGWPWHPRRL
Ga0182037_100871993	3300016404	Soil	MTRGLGRIPAIRGTLTDARDEPGSDIPAGRDTCGQGQTGHMAEGNSGQGAMTGSAPGRRNAGLAPGALGWPWHPRRLATARHREHQAE
Ga0182037_105014502	3300016404	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRWLATAGHREHRAEQGS
Ga0126371_102289243	3300021560	Tropical Forest Soil	MTRGLGRIPAIRGIFPHARDEPGSEMPAGRDAPAPGQTCHMAEGNSGQDTLTGSAPGRRNPGLAPGALGWPWHPRRLATAQHRGHRVE
Ga0126371_115192431	3300021560	Tropical Forest Soil	MTRGLGRIPAIRGTLTQARDEPGSDMPAGRDTSAPGQTGHMAEGNSGQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREHQVE
Ga0209178_10610651	3300027725	Agricultural Soil	MTRGLGRIPAIGGTLTQACDETGNDMPAGRDTPAPDPAGDPANGTSGPGTKPDSAPCRRNRGLAPGVLGWPWHPRRLATAQHRGYEAGQWS
Ga0209177_102254802	3300027775	Agricultural Soil	MAKGLGRIPSIRGTLTQACEPGNDAPADRDPPAPGLSGHPAKGTSGQGSRTGSPPGRRGPGLAPGALGWPWHPRQLATARHRGHGAA
Ga0318516_101330873	3300031543	Soil	MTRGLGRIPAIRGTVTQARSEPGSDMPAGRGTPAPGGISDPAEETAGQATRTGSAPGRRNSGLAPGALGWPWHPRRLATARHRDHRTEQCS
Ga0318516_101912772	3300031543	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318516_102413712	3300031543	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTCGQGQTGHMVEGNSGQGAMTGSAPGRRSAGLAPGALGWPWHPRR
Ga0318534_100093632	3300031544	Soil	MTRGLGKIPSIRGSLTQARDEAGDDIAADSVGPAPGRTGHPTEETSGQGTREGLPSGRRSPGLAPGTLGWPWHPRRLATARHRGHEGA
Ga0318534_100172164	3300031544	Soil	MTRGLGRIPAIRGTLTDARDEPGSDIPAGRDAPGQGQTGHMAEGNSGQGTMTGSAPGRRNAGLAPGALGWPWHPRRLATARHREHRAE
Ga0318541_102255071	3300031545	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTPGQGQTGHMAEANSGQGAMTASAPGRRNAGLAPGALGWPWHPRRLATARHREHRAE
Ga0318538_100252234	3300031546	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTCGQGQTGHMAEGNSGQGAMTGSAPGRRSAGLAPGALGWPWHPRRLATARHREHRAE
Ga0318538_101963092	3300031546	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSELAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318538_108348881	3300031546	Soil	MTRGLGRIPAIRGTLTQTRDEGDDDFSADRGLPASGRTGDAAAGPSGQGTSTGSPSGRRSPGLAPGTLGWPWHPRRLA
Ga0318571_100531312	3300031549	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPSSAPGRRNSGLAPGALGWPWH
Ga0318528_100128495	3300031561	Soil	MTRGLGRIPRIRGTLRQARDQVGNDMPAGSHIPASGRTGYPAEGTGGQGTGESSSPGRRSPGLAPDVLGWPWHPRRLATARHREDGVA
Ga0318528_106697922	3300031561	Soil	MTRGLGRIPAIRGTVTQARSEPGSDMPAGRGTPAPGGISDPAEETAGQATRTGSAPGRRNSGLAPGALGWPW
Ga0318573_103976541	3300031564	Soil	MTRGLGRIPAIRGTVTQARSEPGSDMPAGRGTPAPGGISDPAEETAGQATRTGSAPGRRSSGLAPGALGWPWHPRRLATARHRDHRTEQCS
Ga0318573_107963841	3300031564	Soil	MTRGLGRIPRIRGTLTQARDEVGNDMSASGHTPASGRTGYPAEETRGPGEGSSPGRRSPGLAPDVLGWPWHPRRLATARHREDGVA
Ga0318515_101851151	3300031572	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPSSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQG
Ga0310915_109786581	3300031573	Soil	LMTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPSSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQG
Ga0318555_100490792	3300031640	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTCGQGQTGHMVEGNSGQGAMTGSAPGRRSAGLAPGALGWPWHPRRLATARHREHRAE
Ga0318555_103114651	3300031640	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPSSAPGRRNSGLAPGALGWPWHPRRLATARH
Ga0318574_101696932	3300031680	Soil	MTRGLGRIPAIRGTVPHPRNEPGSDMRAGRDTPAAAQTGYAAEENPGEDAMTGAAPGRRNPGLAPGALGWPWHPRRLATARHRGHRVE
Ga0318574_103558791	3300031680	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTPGQGQTGHMAEANSGQGAMTASAPGRRNAGLAPGALGWPWHPRRLATARHR
Ga0318560_100576852	3300031682	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDPAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318496_100433984	3300031713	Soil	MTRGLGRIPAIRGTHTQARDEPGSDMRAGRDTSAPGRTGHMAEGNSDQGTMTGSAPGRRNPGLAPGALGWPWHPRRLATARHREHQAE
Ga0318496_100742332	3300031713	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDPAEGTAGQVTKAGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0306917_102361142	3300031719	Soil	MTRGLGRIPRIRGTLRQARDEVGNDMSAGRHTPASGRTSYPTEGTGGQCTGEGSAPGRRSPGLAPDVLGWPWHPRRLATARHREDGVA
Ga0318500_100682171	3300031724	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSELAEGTAGQVTKPGSAPGRRNSGLAPG
Ga0306918_104149153	3300031744	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318502_1000136110	3300031747	Soil	MTRGLGKIPSIRGGLTQARDEAGDDIAADSVGPAPGRTGHPTEETSGQGTREGLPSGRRSPGLAPGTLGWPWHPRRLATARHRGHEGA
Ga0318502_103288241	3300031747	Soil	MTRGLGRIPAIRGTLTKARDEPGSDISAGRDTPGQGQTGHMAEGNSGQGAMTGSAPGRRNAGLAPGALGWPWHPRRLATARHREHRAE
Ga0318502_105672771	3300031747	Soil	MTRGLGRIPLIRGTLTQACDEVGTGMSAGRDKPAPGRVGHLAEGTSGQGTGTGSAPGRRRPGLAPGALGWPWH
Ga0318492_101430932	3300031748	Soil	AFTRARVPLLARGLMTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318498_100075942	3300031778	Soil	MTRGLGRIPAIRGTLTNARNEPGSDIPAGRDTPGQGQTGHMAEGNSGQGTMTGSAPGRRNAGLAPGALGWPWHPRRLATARHREHRAE
Ga0318498_100662852	3300031778	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318508_10242782	3300031780	Soil	MTRGLGRIPAIRGTVTLARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318552_101911462	3300031782	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATALHREHRAEQGS
Ga0318550_103310031	3300031797	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTCGQGQTGHMVEGNSGQGAMTGSAPGRRSAGLAPGALGWPWHPRRLAT
Ga0318523_101397613	3300031798	Soil	RGPLLARGLMTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318568_100396904	3300031819	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTCGQGQTGHMAEGNSGQGAMTGSAPGRRNAGLAPGALGWPWHPRRLATALHREHQAE
Ga0318499_100805082	3300031832	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQG
Ga0318511_102866891	3300031845	Soil	MTRGLGRIPAIRGTVTQARSEPGSDMPAGRGTPAPGGISDPAEETAGQATRTGSAPGRRNSGLAPGALGWPWHPRRLATARHRDHRTE
Ga0318495_104739831	3300031860	Soil	TQARDEAGDDIAADSVGPAPGRTGHPTEETSGQGTREGLPSGRRSPGLAPGTLGWPWHPRRLATARHRGHEGA
Ga0306919_100378931	3300031879	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPSSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318536_100200753	3300031893	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTPGQGQTGHMAEANSGQGAMTGSAPGRRNAGLAPGALGWPWHPRRLATARHREHRAE
Ga0318522_100405713	3300031894	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDPAEGTAGQVTKAGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQG
Ga0318551_100517862	3300031896	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTHGQGQTGYMAEGNSGQGAMAGSAPGRRSAGLAPGALGWPWHPRRLATARHREHRAE
Ga0306923_112235272	3300031910	Soil	MTRVLGRIPAIRGTVTQARSEPGSDMPAGRGTPAPGGISDPAEETAGQATRTGSAPGRRNSGLAPGALGWPWHPRRLATARHRDHRTEQCS
Ga0306921_1001120310	3300031912	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARQREHRAEQGS
Ga0310916_110804381	3300031942	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPSSAPGRRNSGLAPGALGWPWHPRRLATARHREH
Ga0310913_101951252	3300031945	Soil	MTRGLGRIPRIRGTLRQARDQVGNDMPAGSHIPASGRTGYPAEGTGGQGTGESSSPGRRSPGLAPDVLGWPWHPRRLAT
Ga0306926_101949421	3300031954	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTCGQGQTGHMAEGNSGQGAMTGSAPGRRSAGLAPGALGWPWHPRRLATARHR
Ga0306926_117283271	3300031954	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTPGQGQTGHMAEANSGQGAMTASAPGRRNAGLAPGALGWPWHPRRLAT
Ga0318531_101234313	3300031981	Soil	LIRARGPLLARGLMTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRISDLAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0318569_103902781	3300032010	Soil	MTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSDRAEGTAGQVTKPSSAPGRRNSGLAPGALGWPWHPRRLA
Ga0318569_106279382	3300032010	Soil	MTRGLGRIPSIKGSLTRTRDEADDDVSAGRCMPASGRTGHQAEGASSQGTGGGFPSGRRSPGLAPGTLGWPWHPRRLATAR
Ga0318549_100471851	3300032041	Soil	MTRGLGKIPSIRGSLTQARDEAGDDIAADSVGPAPGRTGHPTEETSGQGTREGLPSGRRSPGLAPGTLGWPWHPRRLATARHRGH
Ga0318558_100481812	3300032044	Soil	MTRGLGRIPLIRGTLTQACDEVGTGMSAGRDKPAPGRVGHLAEGTSGQGAGTGSAPGRRRPGLAPGALGWPWHPRRLATARHRGHRVA
Ga0318558_106257662	3300032044	Soil	MTRGLGRIPAIRGTVPHPRNEPGSDMRAGRDTPAAAQTGYAAEENPGEDAMTGAAPGRRNPGLAPGALGWPWHPRRLATARHR
Ga0318504_100738922	3300032063	Soil	MTRGLGRIPAIRGTLTNARDEPGSDIPAGRDTCGQGQTGHMVEGNSGQGAMTGSAPGRRSAGLAPGALGWPWHPRRLATA
Ga0306924_102604944	3300032076	Soil	MTRGLGRIPAIRGTVTQARSEPGSDMPAGRGTPAPGGISDPAEETAGQATRTGSAPGRRSSGLAPGALGWPWHP
Ga0306924_107176952	3300032076	Soil	MTRGLGKIPSIRGSLTQARDEAGDDIAADSVGPAPGRTGHPTEETSGQGTREGLPSGRRSPGLAPGTLGWPWHPRRLATA
Ga0318577_103018961	3300032091	Soil	ARGLMTRGLGRIPAIRGTVTQARGEPGSDMPAGPCTPAPGRTSELAEGTAGQVTKPGSAPGRRNSGLAPGALGWPWHPRRLATARHREHRAEQGS
Ga0306920_1008460721	3300032261	Soil	MTRGLGRIPRIRGTLRLARDQVGNDMPAGSHIPASGRTGYPAEGTGGQGTGESSSPGRRSPGLAPDVLGWPWHPRRLATARHREDGVA
Ga0306920_1025398372	3300032261	Soil	TQARDEVGNDMSASGHTLASGRTGYPAEETRGPGEGSSPGRRSPGLAPDVLGWPWHPRRLATARHREDGVA
Ga0335079_100949984	3300032783	Soil	MTRRPGRIPAIGGTLTQARDGACHGMSAGRYTPALGRTGHSAEGAGGKGEGSPLGRRSPGLAPGALGWPRHSRRLATARYRGYGAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100923

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences