NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101086

Metagenome Family F101086

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101086
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 62 residues
Representative Sequence MKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Number of Associated Samples 71
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 38.24 %
% of genes from short scaffolds (< 2000 bps) 72.55 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.608 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(24.510 % of family members)
Environment Ontology (ENVO) Unclassified
(76.471 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(84.314 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 44.78%    β-sheet: 2.99%    Coil/Unstructured: 52.24%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF08291Peptidase_M15_3 58.82
PF04883HK97-gp10_like 1.96
PF03354TerL_ATPase 0.98
PF05766NinG 0.98
PF13524Glyco_trans_1_2 0.98
PF06199Phage_tail_2 0.98
PF11367DUF3168 0.98
PF08299Bac_DnaA_C 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 0.98
COG4626Phage terminase-like protein, large subunit, contains N-terminal HTH domainMobilome: prophages, transposons [X] 0.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A69.61 %
All OrganismsrootAll Organisms30.39 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10020158All Organisms → Viruses → Predicted Viral3913Open in IMG/M
3300000101|DelMOSum2010_c10069652Not Available1628Open in IMG/M
3300000101|DelMOSum2010_c10229856Not Available599Open in IMG/M
3300000116|DelMOSpr2010_c10010611All Organisms → cellular organisms → Bacteria4791Open in IMG/M
3300000116|DelMOSpr2010_c10020810Not Available3203Open in IMG/M
3300000116|DelMOSpr2010_c10023170Not Available2995Open in IMG/M
3300000116|DelMOSpr2010_c10026513All Organisms → Viruses → Predicted Viral2752Open in IMG/M
3300000116|DelMOSpr2010_c10067231Not Available1474Open in IMG/M
3300000116|DelMOSpr2010_c10269985Not Available510Open in IMG/M
3300000117|DelMOWin2010_c10101179Not Available1056Open in IMG/M
3300000117|DelMOWin2010_c10110477Not Available984Open in IMG/M
3300000117|DelMOWin2010_c10218294Not Available575Open in IMG/M
3300000117|DelMOWin2010_c10262041Not Available501Open in IMG/M
3300002930|Water_100231All Organisms → cellular organisms → Bacteria12863Open in IMG/M
3300005078|Ga0070770_10099027Not Available539Open in IMG/M
3300005612|Ga0070723_10427952Not Available644Open in IMG/M
3300005920|Ga0070725_10393534Not Available617Open in IMG/M
3300006026|Ga0075478_10092878Not Available967Open in IMG/M
3300006027|Ga0075462_10111288Not Available847Open in IMG/M
3300006621|Ga0101441_126834All Organisms → Viruses → Predicted Viral2372Open in IMG/M
3300006750|Ga0098058_1061208Not Available1049Open in IMG/M
3300006750|Ga0098058_1079085Not Available902Open in IMG/M
3300006752|Ga0098048_1008984All Organisms → Viruses → Predicted Viral3620Open in IMG/M
3300006752|Ga0098048_1156923Not Available677Open in IMG/M
3300006789|Ga0098054_1008480All Organisms → Viruses → Predicted Viral4318Open in IMG/M
3300006793|Ga0098055_1000977All Organisms → cellular organisms → Bacteria15831Open in IMG/M
3300006802|Ga0070749_10267329Not Available965Open in IMG/M
3300006916|Ga0070750_10029491All Organisms → Viruses → Predicted Viral2733Open in IMG/M
3300006916|Ga0070750_10085394All Organisms → cellular organisms → Bacteria1477Open in IMG/M
3300006920|Ga0070748_1178183Not Available783Open in IMG/M
3300007276|Ga0070747_1319860Not Available532Open in IMG/M
3300007551|Ga0102881_1029040Not Available1556Open in IMG/M
3300007642|Ga0102876_1134761Not Available663Open in IMG/M
3300009077|Ga0115552_1359453Not Available577Open in IMG/M
3300009135|Ga0118736_10234601Not Available585Open in IMG/M
3300009433|Ga0115545_1027992All Organisms → Viruses → Predicted Viral2280Open in IMG/M
3300009442|Ga0115563_1383022Not Available500Open in IMG/M
3300010149|Ga0098049_1122522Not Available808Open in IMG/M
3300010149|Ga0098049_1203946Not Available605Open in IMG/M
3300010150|Ga0098056_1085960Not Available1075Open in IMG/M
3300010151|Ga0098061_1038490Not Available1897Open in IMG/M
3300010153|Ga0098059_1025962All Organisms → Viruses → Predicted Viral2387Open in IMG/M
3300010153|Ga0098059_1424049Not Available501Open in IMG/M
3300010300|Ga0129351_1158050Not Available892Open in IMG/M
3300010368|Ga0129324_10086092Not Available1374Open in IMG/M
3300010392|Ga0118731_111776348Not Available841Open in IMG/M
3300010430|Ga0118733_100287672Not Available3250Open in IMG/M
3300013010|Ga0129327_10578408Not Available617Open in IMG/M
3300017727|Ga0181401_1024983Not Available1754Open in IMG/M
3300017727|Ga0181401_1162285All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.540Open in IMG/M
3300017732|Ga0181415_1087021Not Available704Open in IMG/M
3300017733|Ga0181426_1092968Not Available605Open in IMG/M
3300017767|Ga0181406_1168499Not Available655Open in IMG/M
3300017779|Ga0181395_1041203Not Available1543Open in IMG/M
3300017782|Ga0181380_1010170All Organisms → Viruses → Predicted Viral3640Open in IMG/M
3300017782|Ga0181380_1262164Not Available571Open in IMG/M
3300017963|Ga0180437_10502731All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Robiginitalea → Robiginitalea biformata894Open in IMG/M
3300017971|Ga0180438_10248453Not Available1389Open in IMG/M
3300020347|Ga0211504_1038056All Organisms → Viruses → Predicted Viral1186Open in IMG/M
3300021957|Ga0222717_10001401All Organisms → cellular organisms → Bacteria19726Open in IMG/M
3300021957|Ga0222717_10003531All Organisms → cellular organisms → Bacteria11733Open in IMG/M
3300021957|Ga0222717_10046063All Organisms → Viruses → Predicted Viral2840Open in IMG/M
3300021957|Ga0222717_10652535Not Available544Open in IMG/M
3300021959|Ga0222716_10040919Not Available3330Open in IMG/M
3300021959|Ga0222716_10217934Not Available1197Open in IMG/M
3300022050|Ga0196883_1015363Not Available914Open in IMG/M
3300022050|Ga0196883_1043651Not Available544Open in IMG/M
3300022057|Ga0212025_1003173Not Available1992Open in IMG/M
3300022063|Ga0212029_1060830Not Available551Open in IMG/M
3300022065|Ga0212024_1054100Not Available706Open in IMG/M
3300022067|Ga0196895_1000080Not Available10719Open in IMG/M
3300022067|Ga0196895_1010670Not Available990Open in IMG/M
3300022072|Ga0196889_1036318Not Available984Open in IMG/M
3300022072|Ga0196889_1072137Not Available650Open in IMG/M
3300022158|Ga0196897_1019652Not Available826Open in IMG/M
3300022167|Ga0212020_1007848Not Available1523Open in IMG/M
3300022167|Ga0212020_1016892All Organisms → cellular organisms → Bacteria1150Open in IMG/M
3300022168|Ga0212027_1035385Not Available654Open in IMG/M
3300022200|Ga0196901_1002914All Organisms → cellular organisms → Bacteria8071Open in IMG/M
(restricted) 3300023109|Ga0233432_10274377Not Available793Open in IMG/M
(restricted) 3300023109|Ga0233432_10326897Not Available697Open in IMG/M
3300025070|Ga0208667_1006240All Organisms → Viruses → Predicted Viral3099Open in IMG/M
3300025070|Ga0208667_1019105Not Available1361Open in IMG/M
3300025083|Ga0208791_1024999All Organisms → Viruses → Predicted Viral1171Open in IMG/M
3300025084|Ga0208298_1000533All Organisms → cellular organisms → Bacteria15895Open in IMG/M
3300025084|Ga0208298_1092832Not Available552Open in IMG/M
3300025085|Ga0208792_1012023Not Available1938Open in IMG/M
3300025098|Ga0208434_1006517All Organisms → Viruses → Predicted Viral3561Open in IMG/M
3300025098|Ga0208434_1046839Not Available958Open in IMG/M
3300025108|Ga0208793_1056220All Organisms → Viruses → Predicted Viral1196Open in IMG/M
3300025653|Ga0208428_1075064Not Available984Open in IMG/M
3300025674|Ga0208162_1010568All Organisms → Viruses → Predicted Viral3899Open in IMG/M
3300025769|Ga0208767_1276459All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300025890|Ga0209631_10436321Not Available599Open in IMG/M
3300027790|Ga0209273_10142510Not Available1033Open in IMG/M
3300027845|Ga0209271_10037416All Organisms → Viruses → Predicted Viral2012Open in IMG/M
3300027845|Ga0209271_10051374Not Available1715Open in IMG/M
3300028599|Ga0265309_10946443Not Available593Open in IMG/M
3300031851|Ga0315320_10126182All Organisms → Viruses → Predicted Viral1938Open in IMG/M
3300032373|Ga0316204_11075205Not Available565Open in IMG/M
3300034375|Ga0348336_009401All Organisms → cellular organisms → Bacteria6072Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous24.51%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine20.59%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine12.75%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater7.84%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment5.88%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water5.88%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient2.94%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.94%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.96%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.96%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.96%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.98%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.98%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.98%
Estuary WaterEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water0.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.98%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment0.98%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment0.98%
WaterEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Water0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300002930Estuary water microbial communities from Pearl Estuary, Zhujiang, ChinaEnvironmentalOpen in IMG/M
3300005078Microbial Community from Halfdan Field MHBA5EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300005920Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2EnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006621Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ07 time pointEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007551Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3EnvironmentalOpen in IMG/M
3300007642Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009135Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsfEnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017971Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaGEnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022050Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)EnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022063Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022158Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)EnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300027790Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes)EnvironmentalOpen in IMG/M
3300027845Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300028599Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032373Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1002015823300000101MarineMIKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
DelMOSum2010_1006965223300000101MarineMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
DelMOSum2010_1022985613300000101MarineKMKNILKETSDVLILNTTTFTFATLADVEVILKILVLLLSIIYTADKIIYNRKRRNEKNNK*
DelMOSpr2010_1001061133300000116MarineMKILKETADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRKNKK*
DelMOSpr2010_1002081013300000116MarineMKNILKETSDVLILNTTTFTFASMADVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNESKNMEK*
DelMOSpr2010_1002317053300000116MarineMKIIKETADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRNNKK*
DelMOSpr2010_1002651333300000116MarineMKNILKETSDVLILNTTTFTFASMANVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNESK
DelMOSpr2010_1006723133300000116MarineMKNILKETSDVLILNTTTFTFASMADVEIMLKIGVLLLSIIYTTDKIIYNRKQRKDNESKNMEK*
DelMOSpr2010_1026998523300000116MarineMKNILKETSDVLILNTTTFTFASMANVEIMLKIGVLLLSIIYTTDKIIYNRKRRK
DelMOWin2010_1010117923300000117MarineMIKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIXYTTDXIIYNRKRRKNNESKNVEKKSKXSRTRNGS*
DelMOWin2010_1011047723300000117MarineMKNILKETSDVLVLNTTTFTFATLADVEVILKILVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
DelMOWin2010_1021829413300000117MarineMKNLLKETSDVLLLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
DelMOWin2010_1026204123300000117MarineMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVAKKSK*
Water_100231133300002930Estuary WaterMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNGEKKSK*
Ga0070770_1009902723300005078WaterMKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0070723_1042795213300005612Marine SedimentDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0070725_1039353423300005920Marine SedimentMMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0075478_1009287833300006026AqueousMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0075462_1011128823300006027AqueousMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0101441_12683413300006621Marine Surface WaterLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKKNESKD
Ga0098058_106120823300006750MarineMKNLLKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0098058_107908523300006750MarineMKNLMKEVGDVLVLNTTTFTFVTLADIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK*
Ga0098048_100898423300006752MarineMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESENVEKKSK*
Ga0098048_115692323300006752MarineMMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVEKKSK*
Ga0098054_100848043300006789MarineMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRK
Ga0098055_1000977263300006793MarineMKEVGDVLVLNTTTFTFVTLANIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK*
Ga0070749_1026732943300006802AqueousMKILKETADVLFVNTSIFTFVSFADVEIVLKIVLLLMSIIYTTDKFIYNRKKK*
Ga0070750_1002949123300006916AqueousMIKNLLKETSDVLVLNTTTFTFSTLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0070750_1008539423300006916AqueousMKILKETADVLFVNTSIFTFVSLSDVEIVLKIVLLLMSIIYTTDKFIYNRKKK*
Ga0070748_117818333300006920AqueousLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0070747_131986013300007276AqueousKMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVAKKSK*
Ga0102881_102904023300007551EstuarineMRNLMKEVGDVLVLNTTTFTFVTLADIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK*
Ga0102876_113476113300007642EstuarineVGDVLVLNTTTFTFVTLADIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK*
Ga0115552_135945323300009077Pelagic MarineMKNILKETSDVLLLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0118736_1023460113300009135Marine SedimentVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0115545_102799233300009433Pelagic MarineMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKKNESKDVAKKSK*
Ga0115563_138302213300009442Pelagic MarineLLRCLTNKKMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0098049_112252233300010149MarineMKNLMKEVGDVLVLNTTTFTFVTLANIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK*
Ga0098049_120394613300010149MarineTFTFVSLANVEILLKIGLLIVSIIYTTQKVIYNQKRKNENRNLEK*
Ga0098056_108596013300010150MarineMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNES
Ga0098061_103849043300010151MarineMMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVAKKSK*
Ga0098059_102596233300010153MarineMKNLLKETSDVLVLNTTTFTFATLANVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0098059_142404923300010153MarineMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRR
Ga0129351_115805023300010300Freshwater To Marine Saline GradientMKNILKETSDVLILNTTTFTFATLADVEVILKILVLLLSIIYTADKIIYNRKRRNEKNN
Ga0129324_1008609223300010368Freshwater To Marine Saline GradientMKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVAKKSK*
Ga0118731_11177634823300010392MarineMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKKNESKDVAKKSK*
Ga0118733_10028767223300010430Marine SedimentMKNILKETSDVLILNTTTFTFASMADVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNESKKMEK*
Ga0129327_1057840813300013010Freshwater To Marine Saline GradientNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK*
Ga0181401_102498333300017727SeawaterMKNILKETSDVLILNTTTFTFASMANVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNESKNME
Ga0181401_116228513300017727SeawaterSDVLILNTTTFTFASMANVEILLKIAVLLLSIIYTTDKLIYNRRRRKNEDRNMEK
Ga0181415_108702123300017732SeawaterMMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKKNESKDVAKKSK
Ga0181426_109296823300017733SeawaterMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRK
Ga0181406_116849923300017767SeawaterMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNR
Ga0181395_104120333300017779SeawaterMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNEFKNVEKKSK
Ga0181380_101017033300017782SeawaterMIKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKKNESKDVAKKSK
Ga0181380_126216423300017782SeawaterMKNILKETSDVLILNTTTFTFASMANVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNES
Ga0180437_1050273113300017963Hypersaline Lake SedimentMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKK
Ga0180438_1024845333300017971Hypersaline Lake SedimentMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKKLI
Ga0211504_103805623300020347MarineMKNLMKEVGDVLVLNTTTFTFVTLADIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK
Ga0222717_1000140143300021957Estuarine WaterMKNLFKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0222717_10003531173300021957Estuarine WaterMKEVGDVLVLNTTTFTFVTLADIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK
Ga0222717_1004606333300021957Estuarine WaterMKNILKETSDVLILNTTTFTFASMADVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNESK
Ga0222717_1065253523300021957Estuarine WaterMKNILKETSDVLILNTTTFTFASMANVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNESKNMEK
Ga0222716_1004091933300021959Estuarine WaterMKNILKETSDVLILNTTTFTFASMADVEIMLKIGVLLLSIIYTTDKIIYNRKRRKDNESKNMEK
Ga0222716_1021793423300021959Estuarine WaterMKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0196883_101536323300022050AqueousMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVAKKSK
Ga0196883_104365123300022050AqueousNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0212025_100317353300022057AqueousTADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRKNKK
Ga0212029_106083023300022063AqueousMKIIKETADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRNNKKXAKKI
Ga0212024_105410033300022065AqueousKETADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRNNKK
Ga0196895_100008043300022067AqueousMKNLLKETSDVLLLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0196895_101067033300022067AqueousNIQLLRCLKNKKMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVAKKSK
Ga0196889_103631823300022072AqueousMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0196889_107213723300022072AqueousMKNILKETSDVLILNTTTFTFATLADVEVILKILVLLLSIIYTADKIIYNRKRRNEKNNK
Ga0196897_101965233300022158AqueousMKILKETADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRKNKK
Ga0212020_100784843300022167AqueousLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVAKKSK
Ga0212020_101689213300022167AqueousMKILKETADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRK
Ga0212027_103538513300022168AqueousCLTNKTMKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0196901_1002914123300022200AqueousMKIIKETADVLFVNTSIFTFVSLADVEIVLKIVLLLMSIIYTTDKFIYNRNNKK
(restricted) Ga0233432_1027437723300023109SeawaterMKNLLKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
(restricted) Ga0233432_1032689723300023109SeawaterMKNILKETSDVLILNTTTFTFASMADVEIMLKIGVLLLSIIYTTDKIIYNRKQRKDNESKNMEK
Ga0208667_100624033300025070MarineMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKDVEKKSK
Ga0208667_101910533300025070MarineMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0208791_102499933300025083MarineMKNLLKETSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKN
Ga0208298_1000533273300025084MarineMKEVGDVLVLNTTTFTFVTLANIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK
Ga0208298_109283213300025084MarineMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESENVEKKSK
Ga0208792_101202313300025085MarineMKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNR
Ga0208434_100651743300025098MarineMKNLMKEVGDVLVLNTTTFTFVTLANIEVLLKIVLLLMSIIYTTDKYIYNRKRKKNK
Ga0208434_104683933300025098MarineKNKNILKETSDVLVLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNNESENVEKKSK
Ga0208793_105622013300025108MarineMKNLLKETSDVLLLNTTTFTFATLADVEVILKIAVLLLSIIYTTDKIIYNRKRRKNN
Ga0208428_107506423300025653AqueousMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0208162_101056843300025674AqueousMIKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0208767_127645913300025769AqueousMKILKETADVLFVNTSIFTFVSFADVEIVLKIVLLLMSIIYTTDKFIYNRKKK
Ga0209631_1043632113300025890Pelagic MarineSDVLLLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0209273_1014251013300027790Marine SedimentNKKMKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0209271_1003741623300027845Marine SedimentMKNILKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKKNESKDVAKKSK
Ga0209271_1005137443300027845Marine SedimentTMIKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0265309_1094644313300028599SedimentLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0315320_1012618243300031851SeawaterMKNILKETSDVLVLNTTTFTFATLADVEVILKVAVLLLSIIYTTDKIIYNRKRRKNNESKNVEKKSK
Ga0316204_1041451713300032373Microbial MatMKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYN
Ga0316204_1107520513300032373Microbial MatMKNLMKEVGDVLVLNTTTFTFVTLADIEVLLKIVLLLMSIIYTTDKYIYN
Ga0348336_009401_3_1853300034375AqueousMIKNLLKETSDVLVLNTTTFTFATLADVEVVLKIAVLLLSIIYTTDKIIYNRKRRKNNES

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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