NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101213

Metagenome / Metatranscriptome Family F101213

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101213
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 60 residues
Representative Sequence MKYNWNEDTVDHFKFESYYESREKIEQRIKEFVELDCIPEDGESEEDLVHDLIETVYN
Number of Associated Samples 90
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 23.53 %
% of genes from short scaffolds (< 2000 bps) 87.25 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (70.588 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(30.392 % of family members)
Environment Ontology (ENVO) Unclassified
(65.686 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(85.294 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.35%    β-sheet: 0.00%    Coil/Unstructured: 54.65%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.262.1.1: PriB N-terminal domain-liked1zt2b11zt20.66564
a.126.1.1: Serum albumin-liked1kxpd11kxp0.64964
d.389.1.1: Menin N-terminal domain-liked4gq4a14gq40.62517
a.116.1.0: automated matchesd3byia13byi0.62177
a.116.1.0: automated matchesd5irca15irc0.61929


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF01909NTP_transf_2 0.98
PF06356DUF1064 0.98
PF04404ERF 0.98



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A70.59 %
All OrganismsrootAll Organisms29.41 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10027700All Organisms → cellular organisms → Bacteria3166Open in IMG/M
3300000115|DelMOSum2011_c10065458All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300000116|DelMOSpr2010_c10170941Not Available723Open in IMG/M
3300000117|DelMOWin2010_c10086076All Organisms → cellular organisms → Bacteria1204Open in IMG/M
3300000121|TDF_OR_ARG04_113mDRAFT_c1019579Not Available798Open in IMG/M
3300000127|SA_S1_NOR05_45mDRAFT_c10000681Not Available9507Open in IMG/M
3300000128|SA_S1_NOR08_45mDRAFT_c10027841All Organisms → Viruses → Predicted Viral2328Open in IMG/M
3300001450|JGI24006J15134_10099782All Organisms → Viruses → Predicted Viral1044Open in IMG/M
3300004097|Ga0055584_102256911Not Available554Open in IMG/M
3300004448|Ga0065861_1042384Not Available520Open in IMG/M
3300004460|Ga0066222_1027530Not Available656Open in IMG/M
3300005588|Ga0070728_10241991Not Available994Open in IMG/M
3300005612|Ga0070723_10234609All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon847Open in IMG/M
3300005825|Ga0074476_1368608Not Available565Open in IMG/M
3300006399|Ga0075495_1123137Not Available865Open in IMG/M
3300006752|Ga0098048_1025767All Organisms → Viruses → Predicted Viral1938Open in IMG/M
3300006752|Ga0098048_1057619Not Available1210Open in IMG/M
3300006752|Ga0098048_1106536Not Available846Open in IMG/M
3300006789|Ga0098054_1011768All Organisms → Viruses → Predicted Viral3595Open in IMG/M
3300006789|Ga0098054_1150691Not Available858Open in IMG/M
3300006789|Ga0098054_1360727Not Available514Open in IMG/M
3300006793|Ga0098055_1357489Not Available542Open in IMG/M
3300006916|Ga0070750_10129058All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300006916|Ga0070750_10198558Not Available889Open in IMG/M
3300006920|Ga0070748_1144657Not Available887Open in IMG/M
3300006920|Ga0070748_1332492Not Available537Open in IMG/M
3300006921|Ga0098060_1075092Not Available974Open in IMG/M
3300006921|Ga0098060_1165495Not Available610Open in IMG/M
3300006924|Ga0098051_1113613Not Available723Open in IMG/M
3300007346|Ga0070753_1231723Not Available674Open in IMG/M
3300007543|Ga0102853_1053717Not Available709Open in IMG/M
3300007543|Ga0102853_1088517Not Available573Open in IMG/M
3300007637|Ga0102906_1214114Not Available517Open in IMG/M
3300008050|Ga0098052_1299438Not Available608Open in IMG/M
3300008221|Ga0114916_1022437All Organisms → cellular organisms → Bacteria2108Open in IMG/M
3300008470|Ga0115371_11067693Not Available521Open in IMG/M
3300008999|Ga0102816_1085682Not Available956Open in IMG/M
3300009026|Ga0102829_1311958Not Available525Open in IMG/M
3300009058|Ga0102854_1117772Not Available760Open in IMG/M
3300009058|Ga0102854_1254240Not Available505Open in IMG/M
3300009059|Ga0102830_1232306Not Available539Open in IMG/M
3300009142|Ga0102885_1103425Not Available687Open in IMG/M
3300009420|Ga0114994_11144375Not Available502Open in IMG/M
3300009432|Ga0115005_10920643Not Available706Open in IMG/M
3300009441|Ga0115007_10140068All Organisms → cellular organisms → Bacteria1551Open in IMG/M
3300009512|Ga0115003_10581633Not Available654Open in IMG/M
3300009599|Ga0115103_1726313Not Available530Open in IMG/M
3300009606|Ga0115102_10824824Not Available531Open in IMG/M
3300010149|Ga0098049_1027084All Organisms → Viruses → Predicted Viral1871Open in IMG/M
3300010150|Ga0098056_1059547All Organisms → Viruses → Predicted Viral1316Open in IMG/M
3300010883|Ga0133547_11538972Not Available1246Open in IMG/M
3300014903|Ga0164321_10128956Not Available1090Open in IMG/M
3300014903|Ga0164321_10350941All Organisms → cellular organisms → Archaea715Open in IMG/M
3300017706|Ga0181377_1059378Not Available713Open in IMG/M
3300017719|Ga0181390_1177022Not Available523Open in IMG/M
3300017725|Ga0181398_1014320All Organisms → Viruses → Predicted Viral2001Open in IMG/M
3300017729|Ga0181396_1032653All Organisms → cellular organisms → Bacteria1036Open in IMG/M
3300017755|Ga0181411_1118524Not Available774Open in IMG/M
3300017757|Ga0181420_1071381All Organisms → cellular organisms → Bacteria1091Open in IMG/M
3300017786|Ga0181424_10007734All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium4649Open in IMG/M
3300020347|Ga0211504_1084844Not Available721Open in IMG/M
3300020352|Ga0211505_1142290Not Available566Open in IMG/M
3300021085|Ga0206677_10177026Not Available931Open in IMG/M
3300021365|Ga0206123_10455745Not Available518Open in IMG/M
3300021389|Ga0213868_10221982All Organisms → cellular organisms → Bacteria1120Open in IMG/M
3300021957|Ga0222717_10179147All Organisms → Viruses → Predicted Viral1270Open in IMG/M
3300021959|Ga0222716_10196365All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300021959|Ga0222716_10766305Not Available504Open in IMG/M
3300022053|Ga0212030_1010992All Organisms → cellular organisms → Bacteria1127Open in IMG/M
3300022061|Ga0212023_1058066Not Available537Open in IMG/M
3300022062|Ga0224901_101665Not Available551Open in IMG/M
3300022072|Ga0196889_1043674Not Available881Open in IMG/M
3300022164|Ga0212022_1067787Not Available548Open in IMG/M
3300022200|Ga0196901_1230689Not Available582Open in IMG/M
3300022218|Ga0224502_10319553Not Available599Open in IMG/M
3300022220|Ga0224513_10278744Not Available664Open in IMG/M
(restricted) 3300023210|Ga0233412_10166429Not Available948Open in IMG/M
(restricted) 3300024264|Ga0233444_10331310Not Available647Open in IMG/M
3300024348|Ga0244776_10158154All Organisms → cellular organisms → Bacteria1644Open in IMG/M
(restricted) 3300024521|Ga0255056_10602101Not Available519Open in IMG/M
3300025070|Ga0208667_1000048Not Available50987Open in IMG/M
3300025070|Ga0208667_1013452All Organisms → Viruses → Predicted Viral1776Open in IMG/M
3300025083|Ga0208791_1042258Not Available819Open in IMG/M
3300025099|Ga0208669_1106120Not Available581Open in IMG/M
3300025103|Ga0208013_1043044All Organisms → Viruses → Predicted Viral1250Open in IMG/M
3300025108|Ga0208793_1192277Not Available516Open in IMG/M
3300025120|Ga0209535_1036366All Organisms → cellular organisms → Bacteria2256Open in IMG/M
3300025133|Ga0208299_1043807All Organisms → Viruses → Predicted Viral1755Open in IMG/M
3300025168|Ga0209337_1177671Not Available891Open in IMG/M
3300025276|Ga0208814_1010271All Organisms → cellular organisms → Bacteria3372Open in IMG/M
3300025570|Ga0208660_1020219All Organisms → Viruses → Predicted Viral1971Open in IMG/M
3300025645|Ga0208643_1185950Not Available501Open in IMG/M
3300027212|Ga0208554_1049379Not Available666Open in IMG/M
3300027413|Ga0208950_1096745Not Available627Open in IMG/M
3300027506|Ga0208973_1065882Not Available891Open in IMG/M
3300028125|Ga0256368_1057025Not Available681Open in IMG/M
3300028419|Ga0228625_1088087Not Available631Open in IMG/M
3300029631|Ga0238865_10175Not Available10960Open in IMG/M
3300031519|Ga0307488_10378010Not Available883Open in IMG/M
3300031627|Ga0302118_10424795Not Available593Open in IMG/M
3300032088|Ga0315321_10094674All Organisms → cellular organisms → Bacteria2036Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine30.39%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous12.75%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine10.78%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.86%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.92%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.92%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine2.94%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.94%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.96%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.96%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.96%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.96%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.96%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.96%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.96%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.96%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.98%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.98%
SeawaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Seawater0.98%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.98%
SeawaterEnvironmental → Aquatic → Marine → Gulf → Unclassified → Seawater0.98%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.98%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000121Marine microbial communities from chronically polluted sediments in Tierra del Fuego - site MC sample ARG 03_11.3mEnvironmentalOpen in IMG/M
3300000127Marine microbial communities from chronically polluted sediments in Adventfjord, Norway - Svalbard Archipelago station 1 sample NOR 05_45mEnvironmentalOpen in IMG/M
3300000128Marine microbial communities from chronically polluted sediments in Adventfjord, Norway : sample - Svalbard Archipelago station 1 sample NOR 08_45mEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005588Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300005825Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBBEnvironmentalOpen in IMG/M
3300006399Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007543Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3EnvironmentalOpen in IMG/M
3300007637Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008221Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66EnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009059Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703EnvironmentalOpen in IMG/M
3300009142Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009599Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009606Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020352Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022062Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022218Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13EnvironmentalOpen in IMG/M
3300022220Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024521 (restricted)Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300027212Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027413Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027506Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300028419Seawater microbial communities from Monterey Bay, California, United States - 30DEnvironmentalOpen in IMG/M
3300029631Seawater microbial communities from Ross Sea, Antarctic Ocean - 124LC-38360620EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1002770053300000101MarineMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLXNEVYKY*
DelMOSum2011_1006545843300000115MarineMKYYWNEETVDHFKFISNYENRVNVENQIREFVEIDCDIEEGETEEELVNDLIDVVYN*
DelMOSpr2010_1017094113300000116MarineEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLINEVYKY*
DelMOWin2010_1008607633300000117MarineMKYYWNEETVDHFKFISNYENRVDVEKQIREFVEIDCDIEEGETEEELVNDLIDVVYN*
TDF_OR_ARG04_113mDRAFT_101957923300000121MarineMNYNWNEETVQHFKFESNYESREKIEQRIKEFVEIDCIPEYGESEEDLVNDLIQTVYE*
SA_S1_NOR05_45mDRAFT_1000068173300000127MarineMKNNWNEDIVNHFRFESMYENEVKIEQRITEFVEINCNLEDSESEQNLVDDLMNEVYKPLNLI*
SA_S1_NOR08_45mDRAFT_1002784173300000128MarineMKLKKNMKNNWNEDIVNHFRFESMYENEVKIEQRITEFVEINCNLEDSESEQNLVDDLMNEVYKPLNLI*
JGI24006J15134_1009978233300001450MarineMKYNWNEETVDHFKFESYYESREKIEQRIREFVELDCIPEDGESEEDLVHDLIETVYK*
Ga0055584_10225691123300004097Pelagic MarineMKYNWNEDTVDHFKFESFYENREKIEQRIKEFVEIDCTIEDGETEEKLVDDLIKTVYN*
Ga0065861_104238413300004448MarineMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDGEREEDLVNDLIETVYN*
Ga0066222_102753033300004460MarineKYNWNEDTINHFRFESMYENTEKIEKRITEFVEIDCTIEDGESEEDLVDDLMNQVYKPLNLI*
Ga0070728_1024199133300005588Marine SedimentMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLINEVYKY*
Ga0070723_1023460933300005612Marine SedimentMKYNWNENTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLINEVYKY*
Ga0074476_136860823300005825Sediment (Intertidal)MKYNWNEDTVDHFKFESFYENREKIEERIKEFVELDCTPEDGETEEDLIEDLINQIYKY*
Ga0075495_112313733300006399AqueousITMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLINEVYKY*
Ga0098048_102576733300006752MarineMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDGETEEDLVNDLIETVYE*
Ga0098048_105761933300006752MarineMKYNWNEETVQHFKFESYYEYRGEMEKRIREFVEMNCIPEDGETEEELVYDLIDAVYNDTEVMGETCRNGKDWNNCECC*
Ga0098048_110653643300006752MarineMKYNWNEETVQHFKFESYYEYRGEMEKRIKEFVELNCIPEDGETEEELVYDLIDAVYNDAN*
Ga0098054_101176853300006789MarineMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDWETEEDLVNDLIETVYE*
Ga0098054_115069133300006789MarineMKYQWNEETVEHFKAESYYESRCKIEQRIKEFVERDCIPEDGESEEDLVYDLIDTVYN*
Ga0098054_136072723300006789MarineMKYNWNEDTVDHFKFESYYEYRGEMEKRIREFVEMNCIPEDGETEDDLVYDLIETVYN*
Ga0098055_135748923300006793MarineMKYNWNEDTVDHFKFESYYESRCKIEQRIKEFVELDCIPEDGESEEDLVNDLIETVYN*
Ga0070750_1012905823300006916AqueousMKYYWNEETVDHFKFISNYENRVDVENQIREFVEIDCDIEEGETEEELVNDLIDVVYN*
Ga0070750_1019855833300006916AqueousMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLVNEVYKY*
Ga0070748_114465733300006920AqueousMKYNWNEDTVDHFKSESFYEYRGEMERRIKEFVELNCIPEDGETEEDLINDLIETVYE*
Ga0070748_133249223300006920AqueousMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDGESEEDLVNDLIKTVYN*
Ga0098060_107509223300006921MarineMKYNWNEETVEHFRFESYYESRCKIENRIREFVEIDCTPEDGESEEDLVDDLIKTVYDD*
Ga0098060_116549513300006921MarineMKYQWNEETVEHFKAESYYESRCKIEKRIKEFVERDCIPEDGESEEDLVNDLIETVYN*
Ga0098051_111361313300006924MarineMKYQWNEETVEHFKAESYYESRCKIEQRIKEFVERDCIPEDGESEEDLVNDLIETVYN*
Ga0070753_123172313300007346AqueousTMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLINEVYKY
Ga0102853_105371713300007543EstuarineMKYNWNEETVQHFKFESFYESREKIEQRIKEFVEIDCIPEDGETEEELVDDLIDAVYNDTEVMGETCRNGKDWNKCECC*
Ga0102853_108851713300007543EstuarineMKYNWNEDTVDHFKFESYYESREKIEQRIKEFVELDCIPEDGESEEDLVHDLIKTVYN*
Ga0102906_121411423300007637EstuarineMKYNWNEDTVDHFKFESFYENREKIEERIKEFVELDCIPEDGETEEELIEYLINQIYKY*
Ga0098052_129943823300008050MarineMQYNWNEETVEHFKAESYYESRCKIEKRIKEFVERDCIPEDGESEEDLVNDLIETVYN*
Ga0114916_102243743300008221Deep OceanMNYNWNEDTVDHFKFESFYESREKIEQRIKEFVELDCYIEDGESEEDLVNDLIETIYKY*
Ga0115371_1106769313300008470SedimentNWNEDTVDHFKFESFYESREKIEQRIKEFVELDCYIEDGESEEDLVNDLIETIYKY*
Ga0102816_108568233300008999EstuarineMKYNWNEDTVDHFKFESYYESREKIELRIREFLELDCITEDGESEEDLVHDLIETVYK*
Ga0102829_131195813300009026EstuarineMKYNWNEDTVDHFKFESYYESREKIELRIREFVELDCIPEDGESEEDLVHDLIETVYK*
Ga0102854_111777223300009058EstuarineMKYNWNEDTVDHFKFESYYESREKIELRIREFVELDCIPEDGESEEDLVHDLIETVYK
Ga0102854_125424013300009058EstuarineMKYNWNEETVQHFKFESFYESREKIEQRIKEFVEIDCIPGDGETEEELVDDLIDAVYNDTEVMGETCRNG
Ga0102830_123230623300009059EstuarineMKYNWNEDTVDHFKFESFYENREKIEERIKEFVELDCIPEDGETEEELIEDLINQIYKY*
Ga0102885_110342543300009142EstuarineMKYNWNEDTVDHFKFESFYENREKIEERIKEFVELDCIPEDGETEEDLIEDLINQIYKY*
Ga0114994_1114437523300009420MarineMKYNWNEDTINHFRFESMYENTEEIEKRITEFVEIDCTIEDGESEEDLVDDLMNQVYKPLNLI*
Ga0115005_1092064323300009432MarineMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCIPEDGETEEDLIEDLINEVYKY*
Ga0115007_1014006813300009441MarineMKIKKNMKNNWNEDIVNHFRFESMYENEVKIEQRITEFVEINCNLEDSESEQDLVDDLMNEVYKPLNLI*
Ga0115003_1058163323300009512MarineMKKQKNMKYNWNEDTINHFRFESMYENTEEIEKRIKEFVEIDCTIEDGESEEDLVDDLMNEVYKPLNLI*
Ga0115103_172631323300009599MarineMKYNWNEDTVDHFKFESFYENREKIEQRIKEFVELDCTPEDGETEEELVDDLIDAVYNDTEVMGETCRNGKDWNKCECC*
Ga0115102_1082482423300009606MarineMKYNWNEDTIDHFKFESFYENREKIEQRIKEFVELDCAPEDGETEEDLIEDLINEVYK*
Ga0098049_102708433300010149MarineMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVERDYIPEDGETEEDLVNDLIETVYE*
Ga0098056_105954733300010150MarineMKYQWNEETVEHFKAESYYESRCKIEKRIKEFVERDCTPEDGESEEDLVNDLIETVYN*
Ga0133547_1153897223300010883MarineMKKQKNMKYNWNEDTINHFRFESMYENTEEIEKRITEFVEIDCTIEDGESEEDLVDDLMNQVYKPLNLI*
Ga0164321_1012895623300014903Marine SedimentMKYNWNEDTVEHFRSESFYEYRGEMEKRIKEFVELNCTPEDGETEEDLVYDLIETVYE*
Ga0164321_1035094123300014903Marine SedimentMKYNWNEETVEHFRSESFYEYRGEMEKRIKEFVELNCIPEDGETEDDLVYDLIDAVYN*
Ga0181377_105937823300017706MarineMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDGETEEELVDDLIDAVYNVA
Ga0181390_117702223300017719SeawaterWNEDTVDHFKFESYYESREKIERRIREFVELDCIPEDGESEEDLVHDLIETVYK
Ga0181398_101432043300017725SeawaterMKYNWNEETVQHFKFESFYESREKIKQRIKEFVEIDCIPEDGETEEELVDDLIDAVYNDTEVMGETCRNGKDWNKCECC
Ga0181396_103265333300017729SeawaterMKYNWNEETVEHFKAESYYEYRGEMEKRIKEFVELNCQPENGETEEELVDDLIDAVYNDTEVMGETCRNGKDWN
Ga0181411_111852423300017755SeawaterMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVEIDCIPEDGETEEELVDDLIDAVFAN
Ga0181420_107138123300017757SeawaterMKYNWNEETVQHFKFESFYESREKIEQRIKEFVEIDCIPEDGETEEELVDDLIDAVYNDTEVMG
Ga0181424_1000773423300017786SeawaterMKYNWNEDTVEHFRSESFYEYRGEMEKRIKEFVELNCTPEDGETEDDLVHDLIDAVYN
Ga0211504_108484423300020347MarineMKYNWNEDTVEHFRFESYYEYRGKIEQRIKEFVELNCIPEDGETEEDLVNDLIETVYN
Ga0211505_114229013300020352MarineMKYNWNEDTVEHFRFESYYEYRGKIEQRIKEFVEHNCIPEDGETEEDLIN
Ga0206677_1017702613300021085SeawaterMKYNWNEETVQHFKFESFYESREKIEQRIKEFVEIDCIPEDGETEEELVDDLIDAVYNDTEVMGETCRNGKDWNKCECC
Ga0206123_1045574513300021365SeawaterMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDGETEEEL
Ga0213868_1022198223300021389SeawaterMKYYWNEETVDHFKFISNYENRVDVEKQIREFVEIDCDIEEGETEEELVNDLIDVVYN
Ga0222717_1017914753300021957Estuarine WaterMKYNWNEETVEHFRSESFYEYRGEMEKRIKEFVELNCTPEDGETEEDLVHDLIETVYE
Ga0222716_1019636533300021959Estuarine WaterMKYNWNEETVEHFRSESFYEYRVEMEKRIKEFVELNCTPEDGETEEDLVDDLIEAVY
Ga0222716_1076630533300021959Estuarine WaterMKYNWNEDTVEHFRSESFYEYRVEMEKRIKEFVELNCTPEDGETEEDLVDDLIEAVYN
Ga0212030_101099223300022053AqueousMKYYWNEETVDHFKFISNYENRVDVESQIREFVEIDCDIEEGETEEELVNDLIDVVYN
Ga0212023_105806613300022061AqueousKYNWNEDTVDHFKSESFYEYRGEMERRIKEFVELNCIPEDGETEEDLINDLIETVYE
Ga0224901_10166523300022062SeawaterMKYNWNEETVQHFKFESFYESREKIEQRIKEFVEIDCIPEDGETEEELVDDLIDAVFAN
Ga0196889_104367413300022072AqueousMKYNWNEDTVDHFKSESFYEYRGEMERRIKEFVELNCIPEDGETEEDLINDLIETVYE
Ga0212022_106778723300022164AqueousMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLVNEVYKY
Ga0196901_123068933300022200AqueousIITMKYNWNEDTVDHFKSESFYEYRGEMERRIKEFVELNCIPEDGETEEDLINDLIETVY
Ga0224502_1031955323300022218SedimentMKYNWNEDTVEHFRSESFYEYRVEMEKRIKEFVELNCTPEDGETEEDLVDD
Ga0224513_1027874423300022220SedimentMKYNWNEDTVDHFKFESYYESREKIEQRIKEFVELDCIPEDGESEEDLVHDLIETVYN
(restricted) Ga0233412_1016642953300023210SeawaterMKYNWNEDTVDHFKFESFYENREKIEERIKEFVELDCTPEDGETEEDLIEDLINQIYKY
(restricted) Ga0233444_1033131013300024264SeawaterMKYNWNEETVEHFKAESYYEYRGEMEKRIKEFVELNCTPEDGETEDDLVDDLIDAVYN
Ga0244776_1015815423300024348EstuarineMKYNWNEDTVDHFKFESYYESREKIEQRIKEFVELDCIPEDGESEEDLVHDLIKTVYN
(restricted) Ga0255056_1060210123300024521SeawaterMRYNWNEDTLDHFKFESMYENEVEIEKQVREFVEIDCTIEDGETEEDLVKDLMKKVYNHV
Ga0208667_1000048513300025070MarineMKYNWNEETVQHFKFESYYEYRGEMEKRIREFVEMNCIPEDGETEEELVYDLIDAVYNDTEVMGETCRNGKDWNNCECC
Ga0208667_101345243300025070MarineMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDGETEEDLVNDLIETVYE
Ga0208791_104225813300025083MarineMQYNWNEETVEHFKAESYYESRCKIEQRIKEFVERDCIPEDGESEEDLVNDL
Ga0208792_107165413300025085MarineMKYQWNEETVEHFKAESYYESRCKIEKRIKEFVERDCIPEDGESEED
Ga0208669_110612023300025099MarineMKYQWNEETVEHFKAESYYESRCKIEKRIKEFVERDCIPEDGESEEDLVNDLIETVYN
Ga0208013_104304433300025103MarineMKYQWNEETVEHFKAESYYESRCKIEQRIKEFVERDCIPEDGESEEDLVYDLIDTVYN
Ga0208793_119227713300025108MarineMKYNWNEDTVDHFKFESYYEYRGEMEKRIREFVEMNCIPEDGETEDDLVYDLIETVYN
Ga0209535_103636643300025120MarineMKYNWNEDTVDHFKFESYYESREKIERRIREFVELDCIPEDGESEEDLVHDLIETVYK
Ga0208299_104380773300025133MarineMKYNWNEETVEHFRFESYYESRCKIENRIREFVEIDCNPEDGESEEDLVYDLIKTVYDD
Ga0209337_117767113300025168MarineMKYNWNEETVDHFKFESYYESREKIEQRIREFVELDCIPEDGESEEDLVHDLIETVYK
Ga0208814_101027163300025276Deep OceanMNYNWNEDTVDHFKFESFYESREKIEQRIKEFVELDCYIEDGESEEDLVNDLIETIYKY
Ga0208660_102021943300025570AqueousMKYNWNEDTVDHFKFESFYEGREKIEQRIKEFVEIDCTIEDGETEEDLIEDLINEVYKY
Ga0208643_118595023300025645AqueousMKYNWNEETVQHFKFESFYEGREKIEQRIKEFVELDCIPEDGESEEDLVNDLIKTVYN
Ga0208554_104937913300027212EstuarineMKYNWNEDTVDHFKFESYYESREKIEQRIKEFVELDCIPEDGESEEDLVH
Ga0208950_109674523300027413MarineIMKYNWNEDTVDHFKFESFYENREKIEERIKEFVELDCIPEDGETEEDLIEDLINQIYKY
Ga0208973_106588223300027506MarineMKYNWNEDTIDHFKFESFYENREKIEQRIKEFVELDCAPEDGETEEDLIEDLINQIYKY
Ga0256368_105702513300028125Sea-Ice BrineITMNYNWNEETVQHFKFESNYESREKIEQRIKEFVELDCIPEDGESEEDLVNDLIKTVYN
Ga0228625_108808713300028419SeawaterMKYNWNEDTVEHFRSESFYEYRGEMEKRIKEFVELNCTPEDGETEDDLVYDLIDAVYN
Ga0238865_10175253300029631SeawaterMNYNWNEDTVDHFKFESFYESREKIEQRIKEFVELDCYIEDGESEEDLVNDLIETVYKY
Ga0307488_1037801023300031519Sackhole BrineMKKQKNMKYNWNEDTINHFRFESMYENTEEIEKRITEFVEIDCTIEDGESEEDLVDDLMNEVYKPLNLI
Ga0302118_1042479523300031627MarineMKKQKNMKNNWNEDIVNHFRFESMYENEVKIEQRITEFVEINCNLEDSESEQNLVDDLMNEVYKPLNLI
Ga0315321_1009467413300032088SeawaterMKYNWNEETVQHFKFESFYESREKIEQRIKEFVEIDCIPEDGETEEELVDDL


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