Metagenome / Metatranscriptome Family F101276

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101276
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	43 residues
Representative Sequence	VGVLVRREERPEGGYLAHLTIDNAGKLNSLNRTLMTEIVET
Number of Associated Samples	87
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.11 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.627 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.235 % of family members)
Environment Ontology (ENVO)	Unclassified (39.216 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.64% β-sheet: 20.29% Coil/Unstructured: 55.07%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01243	Putative_PNPOx	62.75
PF00491	Arginase	3.92
PF13424	TPR_12	2.94
PF13410	GST_C_2	1.96
PF02566	OsmC	0.98
PF13432	TPR_16	0.98
PF00578	AhpC-TSA	0.98
PF13649	Methyltransf_25	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	3.92
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.98
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.67 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.76 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	50.00 %
Unclassified	root	N/A	31.37 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	50.00 %
Unclassified	root	N/A	31.37 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	50.00 %
Unclassified	root	N/A	31.37 %
Hypericibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter	1.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	50.00 %
Unclassified	root	N/A	31.37 %
Hypericibacter terrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	1.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10159183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	918	Open in IMG/M
3300005177\|Ga0066690_10141270	All Organisms → cellular organisms → Bacteria → Proteobacteria	1577	Open in IMG/M
3300005187\|Ga0066675_11272085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300005541\|Ga0070733_11159334	Not Available	518	Open in IMG/M
3300005542\|Ga0070732_10822087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300005559\|Ga0066700_10904349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300005764\|Ga0066903_107383468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300005983\|Ga0081540_1030565	All Organisms → cellular organisms → Bacteria → Proteobacteria	2980	Open in IMG/M
3300005983\|Ga0081540_1340082	Not Available	514	Open in IMG/M
3300006046\|Ga0066652_101568075	Not Available	607	Open in IMG/M
3300006354\|Ga0075021_11104715	Not Available	519	Open in IMG/M
3300006804\|Ga0079221_10038232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2082	Open in IMG/M
3300007258\|Ga0099793_10565260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	568	Open in IMG/M
3300009012\|Ga0066710_102870356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300009012\|Ga0066710_103095883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300009089\|Ga0099828_11152280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300009098\|Ga0105245_11196866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	808	Open in IMG/M
3300010048\|Ga0126373_11504064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	738	Open in IMG/M
3300010361\|Ga0126378_12808831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	556	Open in IMG/M
3300010366\|Ga0126379_10779828	Not Available	1054	Open in IMG/M
3300010366\|Ga0126379_11248435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	849	Open in IMG/M
3300010376\|Ga0126381_100456923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1792	Open in IMG/M
3300010398\|Ga0126383_11064823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300012208\|Ga0137376_11019473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300012685\|Ga0137397_10473105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300012925\|Ga0137419_10627503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300012927\|Ga0137416_11505971	Not Available	611	Open in IMG/M
3300012948\|Ga0126375_10789321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	750	Open in IMG/M
3300012948\|Ga0126375_11809211	Not Available	533	Open in IMG/M
3300014501\|Ga0182024_11467914	Not Available	780	Open in IMG/M
3300014969\|Ga0157376_12038905	Not Available	612	Open in IMG/M
3300015241\|Ga0137418_10094785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2692	Open in IMG/M
3300015374\|Ga0132255_105618703	Not Available	531	Open in IMG/M
3300016270\|Ga0182036_10636344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	858	Open in IMG/M
3300016387\|Ga0182040_11409000	Not Available	590	Open in IMG/M
3300016387\|Ga0182040_11599152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300016404\|Ga0182037_10997035	Not Available	730	Open in IMG/M
3300018431\|Ga0066655_11347785	Not Available	515	Open in IMG/M
3300018468\|Ga0066662_11026884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300020580\|Ga0210403_10982837	Not Available	661	Open in IMG/M
3300021178\|Ga0210408_10002385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18330	Open in IMG/M
3300021180\|Ga0210396_10579263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	977	Open in IMG/M
3300021377\|Ga0213874_10254584	Not Available	648	Open in IMG/M
3300021401\|Ga0210393_10666545	Not Available	849	Open in IMG/M
3300021405\|Ga0210387_10064990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2970	Open in IMG/M
3300021407\|Ga0210383_10296243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1391	Open in IMG/M
3300021475\|Ga0210392_10311585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1130	Open in IMG/M
3300021476\|Ga0187846_10031479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2406	Open in IMG/M
3300022525\|Ga0242656_1015634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1079	Open in IMG/M
3300022726\|Ga0242654_10019620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1638	Open in IMG/M
3300025929\|Ga0207664_10257754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1524	Open in IMG/M
3300026309\|Ga0209055_1156033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760	Open in IMG/M
3300026540\|Ga0209376_1404318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300027815\|Ga0209726_10295110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	795	Open in IMG/M
3300027862\|Ga0209701_10544580	Not Available	624	Open in IMG/M
3300027862\|Ga0209701_10580463	Not Available	598	Open in IMG/M
3300027903\|Ga0209488_11086275	Not Available	547	Open in IMG/M
3300029636\|Ga0222749_10291985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300030969\|Ga0075394_11140510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300031057\|Ga0170834_104321714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300031545\|Ga0318541_10446548	Not Available	723	Open in IMG/M
3300031545\|Ga0318541_10566421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300031546\|Ga0318538_10836053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300031549\|Ga0318571_10216561	Not Available	692	Open in IMG/M
3300031573\|Ga0310915_10547741	Not Available	821	Open in IMG/M
3300031680\|Ga0318574_10045100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2298	Open in IMG/M
3300031681\|Ga0318572_10160891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1301	Open in IMG/M
3300031681\|Ga0318572_10178569	Not Available	1234	Open in IMG/M
3300031682\|Ga0318560_10247357	Not Available	957	Open in IMG/M
3300031682\|Ga0318560_10429130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300031719\|Ga0306917_10603054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300031744\|Ga0306918_10021936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3889	Open in IMG/M
3300031744\|Ga0306918_11294299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031748\|Ga0318492_10490706	Not Available	651	Open in IMG/M
3300031753\|Ga0307477_11115039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031763\|Ga0318537_10368324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300031771\|Ga0318546_10075449	All Organisms → cellular organisms → Bacteria → Proteobacteria	2164	Open in IMG/M
3300031777\|Ga0318543_10082767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1361	Open in IMG/M
3300031778\|Ga0318498_10204703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300031782\|Ga0318552_10181640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1062	Open in IMG/M
3300031795\|Ga0318557_10523823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300031846\|Ga0318512_10132706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1192	Open in IMG/M
3300031860\|Ga0318495_10408380	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300031879\|Ga0306919_10559992	Not Available	882	Open in IMG/M
3300031880\|Ga0318544_10000911	All Organisms → cellular organisms → Bacteria → Proteobacteria	7587	Open in IMG/M
3300031880\|Ga0318544_10096060	Not Available	1114	Open in IMG/M
3300031896\|Ga0318551_10234834	Not Available	1021	Open in IMG/M
3300031896\|Ga0318551_10948243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300031897\|Ga0318520_10156497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1324	Open in IMG/M
3300031912\|Ga0306921_12254501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300031942\|Ga0310916_10361064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1234	Open in IMG/M
3300031946\|Ga0310910_11068206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300032035\|Ga0310911_10726249	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300032094\|Ga0318540_10296460	Not Available	780	Open in IMG/M
3300032160\|Ga0311301_11755119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	743	Open in IMG/M
3300032160\|Ga0311301_12118862	Not Available	650	Open in IMG/M
3300032205\|Ga0307472_101160686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300032261\|Ga0306920_100015814	All Organisms → cellular organisms → Bacteria → Proteobacteria	10361	Open in IMG/M
3300032261\|Ga0306920_102947273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300032261\|Ga0306920_103137238	Not Available	620	Open in IMG/M
3300033158\|Ga0335077_11604281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.16%
Plants	Host-Associated → Plants	5.88%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%
Cave	Environmental → Terrestrial → Cave	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.27%
Loam	Environmental → Terrestrial → Soil → Loam	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	52.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_101591831	3300001867	Forest Soil	MSVMVQREERPEGGRLARLTIDNASKLNSLNRALMAEIIEAADG
Ga0066690_101412701	3300005177	Soil	MGVRVAREDRPEGGYLARLVIDNASKLNALNRELMVEIVEAVKALE
Ga0066675_112720851	3300005187	Soil	MGVSVAREDRPEGGYLARLVIDNASKLNALNRELMVEIVEAVKA
Ga0070733_111593342	3300005541	Surface Soil	MGIVVAREDRPEGGHVARLTIDNAPKLNTLNRALMVEI
Ga0070732_108220871	3300005542	Surface Soil	MGVVVAHEERTEGGHVARLTIDNAAKLNTLNRALMVEIVEAIE
Ga0066700_109043491	3300005559	Soil	MSVLVRREERPEGGHLAHVTIDNAGKLNSLNRALMTEIVETAGRLTGD
Ga0066903_1073834682	3300005764	Tropical Forest Soil	MGVLLRREERAEGGYLAHLTIDNVAKLNSLNRTLMAEIVETVGGLTADP
Ga0081540_10305656	3300005983	Tabebuia Heterophylla Rhizosphere	MSVLVRHEKRPEGGHIARVTIDNAGKLNSLNRTLMGEIAENA
Ga0081540_13400821	3300005983	Tabebuia Heterophylla Rhizosphere	MSVLVRREKRPEGGHIARVTIDNAGKLNSLNRALMGEIAENAGRL
Ga0066652_1015680752	3300006046	Soil	MSVMVQREERPEGGRLARVTIDNASKLNSLNRALMTEIIE
Ga0075021_111047151	3300006354	Watersheds	MGVVAAREDRPEGGHVVHLTIDNAKKLNTLNRALMVE
Ga0079221_100382321	3300006804	Agricultural Soil	MGVRVAREDRPEGGYLARLTIDNAGKLNALNRELM
Ga0099793_105652601	3300007258	Vadose Zone Soil	VSVLVRGEERPEGGHLAHVTIDNTGKLNSLNRTLMTEIVETAGR
Ga0066710_1028703562	3300009012	Grasslands Soil	MGVVVTHEERTEGGHLARVTIDNAAKLNTLNRALMVDIVEAIER
Ga0066710_1030958831	3300009012	Grasslands Soil	MGVVVAREDRSEGGYLARLTIDNAAKLNSLNRALMVE
Ga0099828_111522801	3300009089	Vadose Zone Soil	MSVLVRREERPEGGYLAHVTIDNIGKLNSLNRALMGEIADTAASLG
Ga0105245_111968662	3300009098	Miscanthus Rhizosphere	MPVSVVREERPEGGHLARVTIDNQAKLNTLHRRLLVEIVETIEQLE
Ga0126373_115040641	3300010048	Tropical Forest Soil	VAVQVRRDERPEGGCLGHVTIDNAAKLNSLNRELMSELVDTVDGLAADPR
Ga0126378_128088311	3300010361	Tropical Forest Soil	MSVQVQREGTHLARLTIDNAAKLNSLNRALMSEILDAVDA
Ga0126379_107798282	3300010366	Tropical Forest Soil	MVEKDGRVQVALEQRAGGRIARVTIDNRGKLNTLNRALMVEFVAAI
Ga0126379_112484351	3300010366	Tropical Forest Soil	VNVLLQREERPEGGWLARVTIDNTGKLNSLNRALMGEIIETVAAFAS
Ga0126381_1004569231	3300010376	Tropical Forest Soil	VAVLVRREERPEGGYLAHLTIDNPGKLNSLNRILMTEIVETVGAL
Ga0126383_110648232	3300010398	Tropical Forest Soil	MSVAVRREERPEGGHLVHFVIDNAGKLNSLNRALMAEIVEAAGNLAA
Ga0137376_110194732	3300012208	Vadose Zone Soil	MSVVVRREERPEGGYLAHLTIDNIGKLNSLNRALMT
Ga0137397_104731051	3300012685	Vadose Zone Soil	MSVLVRREQRSEGGHLAHVTIDNISRLNSLNRELMIEIVNAVAALDDDPQLRLAI
Ga0137419_106275032	3300012925	Vadose Zone Soil	MSVVVRREERPEGGHLAHVTIDNIGKLNSLNRELMIEIVGTVAGLG
Ga0137416_115059712	3300012927	Vadose Zone Soil	MSVMVQREERPEGGRLARLTIDNASKLNSLNRALMVEIIEAA
Ga0126375_107893212	3300012948	Tropical Forest Soil	MSVAVRREERPEGGHLVHFVINNSGKLNSLNRALMAEIVEAAG
Ga0126375_118092111	3300012948	Tropical Forest Soil	VAVLVRREERPEGGYLAHLTIDNPGKLNSLNRILMTEIVETVG
Ga0182024_114679141	3300014501	Permafrost	MSVLVAREDRPEGGHVVRLTIDNAKKLNTLNRALMVEIVEAIEL
Ga0157376_120389052	3300014969	Miscanthus Rhizosphere	MPVSVVREERPEGGHLARVTIDNQAKLNTLHRALLVEIV
Ga0137418_100947854	3300015241	Vadose Zone Soil	MSVVVRREERPEGGHLAHVTIDNIGKLNSLNRELMIEIVSTV
Ga0132255_1056187032	3300015374	Arabidopsis Rhizosphere	MPVLVFREERPEGGHLARVTIDNRAKLNTLNRALIVEIV
Ga0182036_106363441	3300016270	Soil	VGVLVRREECPEGGCIAHLTIDNAGKLNSLNRALMAEIVETVG
Ga0182040_114090001	3300016387	Soil	MSVLVRRERRPEGGHLARLTIDNAAKMNSLNRALMTEIIE
Ga0182040_115991522	3300016387	Soil	VNVLLQREERPEGGWLARVTIDNTGKLNSLNRALMGEI
Ga0182037_109970351	3300016404	Soil	VGVLVRREERPEGGYLAHLTIDNAGKLNSLNRTLMTEIVET
Ga0066655_113477852	3300018431	Grasslands Soil	MMVMVRREERPEGAYLAQLTIDNVGRLNRLNPALMTES
Ga0066667_110325042	3300018433	Grasslands Soil	MGVTVVHEDRPEGGHLARLTIDNAAKLNALNRELMVEIVDAVKALEADPALRL
Ga0066662_110268841	3300018468	Grasslands Soil	MSVVVRREQRSEGGHLAHVTIDNIGKLNSLNRELMVEIVSAVAALDN
Ga0210403_109828372	3300020580	Soil	VAVLVRREERPEGGYLAHLTIDNAGKLNSLNRILMTEIVE
Ga0210408_100023851	3300021178	Soil	MSVLVRREERSEGGHLAHVTIDNTGKLNSLNRELMIEIVCAVAGLDNDP
Ga0210396_105792634	3300021180	Soil	MRVMVQHEERPEGGPLARLTIDNSSKLNSLNRALMLE
Ga0213874_102545841	3300021377	Plant Roots	MSVMVQHEERTEGGCLARLTIDNASKLNSLNRALMAD
Ga0210393_106665452	3300021401	Soil	MNVIIQHEERPKGGRLARLTIDNASKLNSLNRALM
Ga0210387_100649901	3300021405	Soil	MSVLVRREERSEGGHLAHVTIDNTGKLNSLNRELMI
Ga0210383_102962431	3300021407	Soil	MSVMVQREERLEVGRLARVTIDNASKLNSLNRALMAEIIE
Ga0210392_103115853	3300021475	Soil	MSVLVRREERSEGGHLAHVTIDNTGKLNSLNRELMIEIVCAVA
Ga0187846_100314791	3300021476	Biofilm	VGVLVRREERPEGGYLAHLTIDNAGKLNSLNRRLMNEIVAAAEEL
Ga0242656_10156343	3300022525	Soil	MSVLVRREERSEGGHLAHVTIDNTGKLNSLNRELMIEI
Ga0242654_100196201	3300022726	Soil	MSVLVRREERSEGSHLAHVTIDNTGKLNSLNRELMIEIV
Ga0207664_102577541	3300025929	Agricultural Soil	MGVRVAREDRPEGGYLARLTIDNAGKLNALNRELMVEIV
Ga0209055_11560331	3300026309	Soil	MSVVVRREQRSEGGHLAHVTIDNISRLNSLNRELMIEIVNAVAALDDDPQL
Ga0209376_14043181	3300026540	Soil	MGVSVVREDRPEGGHVARLTIDNAGKLNALNRELMVEIV
Ga0209726_102951102	3300027815	Groundwater	MGVGVVREERAEGGRLARLTIDNAAKLNSLNRALMGEIVDAVAAR
Ga0209701_105445801	3300027862	Vadose Zone Soil	MGVVVAHEERKEGGHIARLTIDNAAKLNTLNRALMVEIVEAIER
Ga0209701_105804631	3300027862	Vadose Zone Soil	MSVLVRREERPEGGHLVHVTIDNAGKLNSLNRALMTEIVET
Ga0209488_110862752	3300027903	Vadose Zone Soil	MNVITQHEERPEGGRLARLTIDNASKLNSLNRALMAEIVEAADGL
Ga0222749_102919851	3300029636	Soil	MSVLVRREERSEGGHLAHVTIDNTGKLNSLNRELMIEIVCAVAGLDNDPQL
Ga0075394_111405101	3300030969	Soil	MGVLLRREERAEGGYLAHLTIDNVAKLNSLNRTLMAEIVETVG
Ga0170834_1043217141	3300031057	Forest Soil	MVVQLRREERAEGGYLAHLTIDNVAKLNSLNRTLMAEIV
Ga0318541_104465482	3300031545	Soil	MSVTVRLEERPEGGRVARFTIDNAAKLNSLHRALMAEI
Ga0318541_105664211	3300031545	Soil	VNVLLQREERPEGGWLARVTIDNTGKLNSLNRALMGEIV
Ga0318538_108360532	3300031546	Soil	VGVLVRREDRPEGGHVAHLTIDNAGKLNSLNRTLMTEMV
Ga0318571_102165611	3300031549	Soil	VGVLVRCEERPEGGYLAHLTIDNAGKLNSLNRTLMTEIVETVGGLAGDPRLR
Ga0310915_105477412	3300031573	Soil	VGVLVRREECPEGGCIAHLTIDNAGKLNSLNRTLMIEIVETVAGLAADPR
Ga0318574_100451004	3300031680	Soil	VGVLVRREECPEGGRIAHLTIDNAGKLNSLNRTLM
Ga0318572_101608913	3300031681	Soil	VGVLVRREERPEGGYLAHLTIDNAGKLNSLNRTLMTE
Ga0318572_101785691	3300031681	Soil	VGILVRRGERPEGGYLAHLTIDNADKLNSLNRTLMTEMVETVGGLAVDP
Ga0318560_102473571	3300031682	Soil	VGILVRREERPEGGYLAHLTIDNADKLNSLNRTLMTEMVETV
Ga0318560_104291301	3300031682	Soil	VGVLVRREDRPEGGHVAHLTIDNAGKLNSLNRTLMTEIVEAVGGLAQDT
Ga0306917_106030543	3300031719	Soil	VAVLVRREERPEGGYLAHLTIDNPGKLNSLNRILMTEIVETVGALAVDPRL
Ga0306918_100219365	3300031744	Soil	VGVLVRHEERAEGRYLAHLTIDNAGKLNSLNRTLMTEIVETVGGLAGDP
Ga0306918_112942991	3300031744	Soil	VNVLLQREERPEGGWLARVTIDNTGKLNSLNRALM
Ga0318492_104907062	3300031748	Soil	MSVTVRLEERPEGGRVARFTIDNAAKLNSLHRALM
Ga0307477_111150392	3300031753	Hardwood Forest Soil	VGVLVRREECPEGGCIAHLTIDNAGKLNSLNRTLMTEIVETVAGLAA
Ga0318537_103683242	3300031763	Soil	VGVLVRHEERAEVGYLAHLTIDNAGKLNSLNRTLMTEIVETVGGLAGDPR
Ga0318546_100754494	3300031771	Soil	MSVTVRLEERPEGGHVARFTIDNAAKLNSLHRALMAEIMQ
Ga0318543_100827671	3300031777	Soil	MSVVVRRQERPEGGHLARLTIDNAGKLNSLIRALMSEIT
Ga0318498_102047032	3300031778	Soil	VGVLVRCEERPEGGYLAHLTIDNAGKLNSLNRTLMTEIVETVGGLAGDPRL
Ga0318552_101816402	3300031782	Soil	VGVLVRREDRPEGGHVAHLTIDNAGKLNSLNRTLMTEIVEAVGGLAQD
Ga0318557_105238232	3300031795	Soil	VGVQVRREERPEGGCLAHVTIDNVGKLNSLNRGLM
Ga0318512_101327061	3300031846	Soil	VGVLVRREDRPEGGHVAHLTIDNAGKLNSLNRTLMTEIVEAVGGLAEDPR
Ga0318495_104083802	3300031860	Soil	VGVLVRREECPEGGCIAHLTIDNAGKLNSLNRALMAEIV
Ga0306919_105599921	3300031879	Soil	VGVLVRREECPEGGCIAHLTIDNAGKLNSLNRTLMIEIVET
Ga0318544_100009111	3300031880	Soil	MSVAVRREERPEGGHLVHFVINNARKLNSLNRALMAEIVEAAASLI
Ga0318544_100960602	3300031880	Soil	VGVLVRREERPEGGYLAHLTIDNAGKLNSLNRTLMTEIVETVGRLA
Ga0318551_102348342	3300031896	Soil	VGILVRREERPEGGYLAHLTIDNADKLNSLNRTLMT
Ga0318551_109482432	3300031896	Soil	VGVQVRREERPEGGCLAHVTIDNVGKLNSLNRGLMRELVE
Ga0318520_101564971	3300031897	Soil	VGVLVRREERPEGGYLAHLTIDNAGKLNSLNRTLMT
Ga0306921_122545011	3300031912	Soil	LGVLVRREERPECGHLAHLTIDNAGKLNSLNRSLM
Ga0310916_103610642	3300031942	Soil	VGVLVRREDRPEGGHVAHLTIDNAGKLNSLNRTLMTEIVEAVGGLAEDPRL
Ga0310910_110682062	3300031946	Soil	VGVLVRHEERAEGRYLAHLTIDNAGKLNSLNRTLMTEIVETVGGLAGDPRLRLA
Ga0310911_107262492	3300032035	Soil	VGVLVRREECPEGGCITHLTIDNAGKLNSLNRTLMTE
Ga0318540_102964601	3300032094	Soil	VGILVRREERPEGGYLAHLTIDNADKLNSLNRTLMTEMVETVGGLAVDPGLRLAVLS
Ga0311301_117551192	3300032160	Peatlands Soil	MGVVVAREERPEGGHVARLTIDNERKLNTLNRALMVEIVEAIERLEADAA
Ga0311301_121188622	3300032160	Peatlands Soil	MGVVVTREERPEGGRVVRLTIDNAAKLNSLNRALMAEIVDV
Ga0307472_1011606861	3300032205	Hardwood Forest Soil	MGVLVRCEERPEGGYLAHLTIDNAGKLNSLNRTLMTEIVETV
Ga0306920_10001581412	3300032261	Soil	VGVLVRREERPEGGYLAHLTIDNAGKLNSLNRRLMSEIVAAVEELTG
Ga0306920_1029472732	3300032261	Soil	VNVLLQREERPEGGWLARVTIDNTVKLNSLNRALMGEIIETVAAFASD
Ga0306920_1031372382	3300032261	Soil	MSVLVRHEERSEGGQIARLTIDNASKLNSLNRALM
Ga0335077_116042811	3300033158	Soil	MGVVAVREERPEGGHLIRLTIDNAKKLNTIGRALMVEIVETIERLEAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101276

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences