Metagenome / Metatranscriptome Family F101285

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101285
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	65 residues
Representative Sequence	ATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Number of Associated Samples	81
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.97 %
% of genes near scaffold ends (potentially truncated)	94.12 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (54.902 % of family members)
Environment Ontology (ENVO)	Unclassified (76.471 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.45% β-sheet: 24.47% Coil/Unstructured: 68.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00374	NiFeSe_Hases	2.94
PF01609	DDE_Tnp_1	1.96
PF01494	FAD_binding_3	1.96
PF00211	Guanylate_cyc	1.96
PF07883	Cupin_2	1.96
PF02585	PIG-L	0.98
PF13276	HTH_21	0.98
PF06267	DUF1028	0.98
PF15919	HicB_lk_antitox	0.98
PF13620	CarboxypepD_reg	0.98
PF13701	DDE_Tnp_1_4	0.98
PF02371	Transposase_20	0.98
PF12728	HTH_17	0.98
PF00313	CSD	0.98
PF13655	RVT_N	0.98
PF07676	PD40	0.98
PF03575	Peptidase_S51	0.98
PF13424	TPR_12	0.98
PF13683	rve_3	0.98
PF10935	DUF2637	0.98
PF13378	MR_MLE_C	0.98
PF01527	HTH_Tnp_1	0.98
PF07366	SnoaL	0.98
PF00561	Abhydrolase_1	0.98
PF00226	DnaJ	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	3.92
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	2.94
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	2.94
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.96
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.96
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	1.96
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.96
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.96
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.96
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.96
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.96
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.96
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.98
COG3342	Uncharacterized conserved protein, Ntn-hydrolase superfamily	General function prediction only [R]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.51 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19.61 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.98 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.90 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.96 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.98 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.90 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.96 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.98 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.90 %
Gandjariella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Gandjariella	0.98 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.98 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.90 %
Gandjariella thermophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Gandjariella → Gandjariella thermophila	0.98 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.98 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003373\|JGI25407J50210_10152801	Not Available	568	Open in IMG/M
3300005332\|Ga0066388_107234594	Not Available	558	Open in IMG/M
3300005541\|Ga0070733_10760954	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300006031\|Ga0066651_10239776	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300006057\|Ga0075026_100344416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	825	Open in IMG/M
3300006354\|Ga0075021_10271970	Not Available	1046	Open in IMG/M
3300006800\|Ga0066660_10825630	Not Available	755	Open in IMG/M
3300010379\|Ga0136449_104333416	Not Available	524	Open in IMG/M
3300012203\|Ga0137399_10895549	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300015371\|Ga0132258_12160731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1398	Open in IMG/M
3300016270\|Ga0182036_10743688	All Organisms → cellular organisms → Bacteria → Terrabacteria group	796	Open in IMG/M
3300016294\|Ga0182041_10278008	Not Available	1377	Open in IMG/M
3300016341\|Ga0182035_11265227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	660	Open in IMG/M
3300016341\|Ga0182035_11528940	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300016341\|Ga0182035_12101230	Not Available	513	Open in IMG/M
3300016357\|Ga0182032_10465434	Not Available	1034	Open in IMG/M
3300016357\|Ga0182032_11824383	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300016371\|Ga0182034_12023986	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300016387\|Ga0182040_11153165	Not Available	651	Open in IMG/M
3300016387\|Ga0182040_11568422	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300016422\|Ga0182039_10800894	Not Available	836	Open in IMG/M
3300016422\|Ga0182039_11055907	Not Available	730	Open in IMG/M
3300016422\|Ga0182039_11304116	Not Available	658	Open in IMG/M
3300016445\|Ga0182038_10876857	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300017942\|Ga0187808_10527443	Not Available	549	Open in IMG/M
3300017966\|Ga0187776_10851995	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300018468\|Ga0066662_12803341	Not Available	517	Open in IMG/M
3300018482\|Ga0066669_11855386	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300020581\|Ga0210399_10332725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1268	Open in IMG/M
3300021178\|Ga0210408_10078455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2588	Open in IMG/M
3300021178\|Ga0210408_10801777	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300021420\|Ga0210394_11793852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	512	Open in IMG/M
3300021475\|Ga0210392_10491510	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300021478\|Ga0210402_11893656	Not Available	522	Open in IMG/M
3300025905\|Ga0207685_10555460	Not Available	611	Open in IMG/M
3300028047\|Ga0209526_10526110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300031094\|Ga0308199_1042797	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300031543\|Ga0318516_10124966	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300031544\|Ga0318534_10582183	Not Available	637	Open in IMG/M
3300031544\|Ga0318534_10855090	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031549\|Ga0318571_10079266	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300031640\|Ga0318555_10084442	Not Available	1657	Open in IMG/M
3300031668\|Ga0318542_10501088	Not Available	631	Open in IMG/M
3300031679\|Ga0318561_10281124	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300031680\|Ga0318574_10258657	Not Available	1008	Open in IMG/M
3300031708\|Ga0310686_100732702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	4308	Open in IMG/M
3300031719\|Ga0306917_10955567	Not Available	670	Open in IMG/M
3300031744\|Ga0306918_10389315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1085	Open in IMG/M
3300031747\|Ga0318502_10588494	Not Available	670	Open in IMG/M
3300031748\|Ga0318492_10815640	Not Available	503	Open in IMG/M
3300031764\|Ga0318535_10233950	Not Available	822	Open in IMG/M
3300031765\|Ga0318554_10083763	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300031765\|Ga0318554_10449373	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300031768\|Ga0318509_10331173	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031769\|Ga0318526_10222885	Not Available	771	Open in IMG/M
3300031771\|Ga0318546_10060441	All Organisms → cellular organisms → Bacteria	2389	Open in IMG/M
3300031778\|Ga0318498_10367835	Not Available	641	Open in IMG/M
3300031782\|Ga0318552_10554929	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300031793\|Ga0318548_10211046	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300031796\|Ga0318576_10549308	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031797\|Ga0318550_10235042	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300031798\|Ga0318523_10096892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1444	Open in IMG/M
3300031799\|Ga0318565_10540618	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031821\|Ga0318567_10375387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Gandjariella → Gandjariella thermophila	805	Open in IMG/M
3300031846\|Ga0318512_10430641	Not Available	665	Open in IMG/M
3300031859\|Ga0318527_10498586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300031879\|Ga0306919_10106428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1983	Open in IMG/M
3300031879\|Ga0306919_11159555	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300031893\|Ga0318536_10201950	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1012	Open in IMG/M
3300031894\|Ga0318522_10070591	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300031894\|Ga0318522_10197041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	762	Open in IMG/M
3300031912\|Ga0306921_10132220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2913	Open in IMG/M
3300031912\|Ga0306921_11684494	Not Available	686	Open in IMG/M
3300031945\|Ga0310913_10375256	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300031946\|Ga0310910_10211918	Not Available	1505	Open in IMG/M
3300031946\|Ga0310910_10464810	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300031947\|Ga0310909_10072280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2713	Open in IMG/M
3300031947\|Ga0310909_10722485	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300031954\|Ga0306926_10858869	Not Available	1090	Open in IMG/M
3300031954\|Ga0306926_12089014	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031959\|Ga0318530_10461755	Not Available	527	Open in IMG/M
3300032008\|Ga0318562_10310825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	916	Open in IMG/M
3300032009\|Ga0318563_10300586	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300032035\|Ga0310911_10804646	Not Available	543	Open in IMG/M
3300032043\|Ga0318556_10607554	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300032052\|Ga0318506_10014732	All Organisms → cellular organisms → Bacteria	2727	Open in IMG/M
3300032055\|Ga0318575_10231447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	931	Open in IMG/M
3300032063\|Ga0318504_10324000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	731	Open in IMG/M
3300032066\|Ga0318514_10125584	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300032076\|Ga0306924_10087422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	3504	Open in IMG/M
3300032076\|Ga0306924_12490989	Not Available	519	Open in IMG/M
3300032089\|Ga0318525_10325134	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300032090\|Ga0318518_10328127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	785	Open in IMG/M
3300032094\|Ga0318540_10041642	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300032094\|Ga0318540_10570976	Not Available	545	Open in IMG/M
3300032261\|Ga0306920_100220895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2827	Open in IMG/M
3300032261\|Ga0306920_100871020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1318	Open in IMG/M
3300032261\|Ga0306920_101536268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	949	Open in IMG/M
3300032261\|Ga0306920_102747876	Not Available	671	Open in IMG/M
3300033289\|Ga0310914_11173488	Not Available	669	Open in IMG/M
3300033289\|Ga0310914_11542164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.10%
Aquatic	Environmental → Aquatic	2.94%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.10%
Sediment	Environmental → Aquatic → Sediment	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.18%
Loam	Environmental → Terrestrial → Soil → Loam	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	82.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	54.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25407J50210_101528011	3300003373	Tabebuia Heterophylla Rhizosphere	VNLVGSNLVMGLAFGRSGKLFATDFMQNPGLYLIDMKTGFETAIAALPFGFSSGLELIPQRKARKTNRPG*
Ga0066388_1072345942	3300005332	Tropical Forest Soil	ATKIVNLVGSMAVMGLAFGRDGKLYGTDFVQNPGLYRIDIKTGFETAIAALPFGFSSALELAD*
Ga0070733_107609542	3300005541	Surface Soil	DPATGAATKLVNLVGSNSVMGLAFGRDGKLFATDFTQNPGLYQIDPETGFEKAIAALPFGFSSSLELANPDEENGN*
Ga0066651_102397762	3300006031	Soil	IVDLVGSNSVMGLAFGRNGQLYASDFAPNPRLYRIEIETGVETAIAALPFGFSSGLELANPQEPRQ*
Ga0075026_1003444161	3300006057	Watersheds	KATRLVNLVGSNSVMGLAFGRDGKLYATDNPQNPGLYLLDANTGFETAIAAVPFGFSSDLVLVNPD*
Ga0075021_102719701	3300006354	Watersheds	TTGKATRLVNLVGSNSVMGLAFGRDGLLYATDNPQNPGLYLLDAKTGFETAIAAVPFGFSSDLVLVNPD*
Ga0066660_108256302	3300006800	Soil	TATKLFNLVGSTSVMGLAFGRDGKLYATDNPQNPGLYRIGTTTGFEAAIAALPFGFSSGLELINPGG*
Ga0136449_1043334161	3300010379	Peatlands Soil	NLVGSNYVMGLAFGRDGKLYATDDSQNPGLYRINTRTGFETAIAALPFGFSSGLELIGSGG*
Ga0137399_108955492	3300012203	Vadose Zone Soil	DPATGAATKVVNLVGSNLVMGLAFGREGKLYATDFEEHPGLYLVTQTGLETAIAALPFGFSSALELANPVATH*
Ga0132258_121607311	3300015371	Arabidopsis Rhizosphere	AATKLFNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYVIGAKTGFETAIAALPFGFSSDLVLMGSGG*
Ga0182036_107436883	3300016270	Soil	ATKLVNLVGSNLVMGLAFGRDGKLYATDNFPNSGMYVIDTTTGVETTIAALPFGFSSDLVLMNPDE
Ga0182041_102780081	3300016294	Soil	VMGLAFGRDGKLYATDNFPNSGLYRIDTKTGLETAIAALPFGSSSDLVLMN
Ga0182035_112652271	3300016341	Soil	LAFGRDGKLYATDNFQNSGLYVIGTKTGFETAIAALPFGFSSDLVLMD
Ga0182035_115289401	3300016341	Soil	LVNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDAKTGFETAIAALPFGFSSDLVLMDSGG
Ga0182035_121012301	3300016341	Soil	NLMMGLAFGRDGKLYGTDNFPNSGLYLIGAKTGFETAIAALPFGFSSDLVLMGSGG
Ga0182032_104654341	3300016357	Soil	PLFNLTGPSNYVMGLAFGRDGKLYATDNFNPSGLYLIGTKTGAETTIAALPFGSSSDLVLMNPGE
Ga0182032_118243831	3300016357	Soil	ATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNAGLYRIDTKTGFETAIAALPFGSSSDLVLMNSGG
Ga0182034_120239861	3300016371	Soil	KATKLFNLVGSNTVMGLAFGPDGRLYATDFTQNPGLYRIDTKTGFETAIAALPFGFSSGLELIGSGR
Ga0182040_111531651	3300016387	Soil	RINPATGTATKLVNLTGSNYVMGLAFGRDGKLYATDAFANPGLYRVGAATGLETAIAALPFGFSSGLELMNPGG
Ga0182040_115684221	3300016387	Soil	VGSNYVMGLAFGRDGKLYGTDAFPNSGLYRIDPKTGFETAIAALPFGSSSDLVLMNPGG
Ga0182039_108008942	3300016422	Soil	GKATKLVNLVGSNYVMGLAFGRDGTLYATDAFANPGLYRVGAATGLETAIAALPFGFSSGLELMNPGG
Ga0182039_110559072	3300016422	Soil	VGSNLVMGLAFGRNGKLYATDNFPNSGMYVIDDNTGFETAIAALPFGFSSDLVLMN
Ga0182039_113041162	3300016422	Soil	YRINLATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTTTGLETTIAALPFGSSSDLVLMNPGG
Ga0182038_108768571	3300016445	Soil	GSNLVMGLAFGRDGKLYATDNFPNSGLYVIDAKTGFETAIAALPFGFSSDLVLMDSGG
Ga0187808_105274431	3300017942	Freshwater Sediment	VNLVGSNTVMGLAFGRDGKLYATDFVQNPGLYRIDTATGFETAIAALPFGFSSGLELTG
Ga0187776_108519951	3300017966	Tropical Peatland	MGLAFGRDGKLYATDNFPSSGLYLIDPKTGFETAIAALPFGSSSDLVLMDPGGSAASSPG
Ga0066662_128033411	3300018468	Grasslands Soil	TGTATKLFNLVGSTSVMGLAFGRDGKLYATDNPQNPGLYRIGTTTGFEAAIAALPFGFSSGLELINPGG
Ga0066669_118553861	3300018482	Grasslands Soil	YRIDPTTGAATKLFNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMGSGG
Ga0210399_103327253	3300020581	Soil	ATKLFNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYRIDTKTGFETAIAALPFGFSSDLVLMNQGR
Ga0210408_100784551	3300021178	Soil	LAFGRDGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMGSSG
Ga0210408_108017772	3300021178	Soil	LFNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMGSGG
Ga0210394_117938522	3300021420	Soil	MGLAFGRNGKLYATDNFPDSGLYVIDTKTGFETAIAALPFGFSSDLVLMNQGR
Ga0210392_104915103	3300021475	Soil	RIDPATGAATKLFNLVGSNLVMGLAFGRDGKLYATDNFPDSGLYVIDTKTGFETAIAALPFGFSSDLVLMGSGG
Ga0210402_118936561	3300021478	Soil	ATKLFNLVGSNLVMGLAFGRNGKLYATDNFPDSGLYVIDTKTGFETAIAALPFGFSSDLVLMNQGR
Ga0207685_105554602	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MGLAFGRDGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMGSGG
Ga0209526_105261101	3300028047	Forest Soil	PETGKATKIANLVGSNSVMGLAFGRQGKLYATDFAQNPGLYLIDIKTGFETAIAALPFGFSSSLELANPDHEIGN
Ga0308199_10427972	3300031094	Soil	GAATKIVNLVGSNSVMGLAFGREGKLYATDFAQKPGLYLIDIKTGFETAIAALPFGFSSGLELANPSLPESDGDQ
Ga0318516_101249661	3300031543	Soil	LYRINLATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPRG
Ga0318534_105821832	3300031544	Soil	FGRNGKLYATDNFNPSGLYVIDTKTGAETTIAALPFGFSSDLVLMNPGE
Ga0318534_108550901	3300031544	Soil	LYRINPATGTATKLANLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318571_100792662	3300031549	Soil	MGLAFGRDGKLYATDNFNPSGLYVIDTKTGAETTIAALPFGFSSDLVLMNPDE
Ga0318555_100844422	3300031640	Soil	YRINLATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318542_105010882	3300031668	Soil	VNLVGSNLVMGLAFGRNGKLYATDNFPNSGMYVIDDNTGFETAIAALPFGFSSDLVLMN
Ga0318561_102811241	3300031679	Soil	VNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318574_102586571	3300031680	Soil	KLVNLVGSNYVMGVAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0310686_1007327027	3300031708	Soil	FNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLVD
Ga0306917_109555671	3300031719	Soil	MGLAFGRNGKLYATDNFNPSGLYVIDTKTGAETTIAALPFGSSSDLVLMNPGE
Ga0318500_103119242	3300031724	Soil	DPATGTATKLVNLVGSNTVMGLAFGRDGKLYGTDFVQNPGLYRIDPATGFQTAIAALPFGFSSGLELMN
Ga0306918_103893151	3300031744	Soil	NLATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318502_105884941	3300031747	Soil	LFNLTGPSNYVMGLAFGRDGKLYATDNFNPSGLYVIGTKTGAETTIAALPFGFSSDLVLMNPGE
Ga0318492_108156401	3300031748	Soil	AILYRINLATGTATKLVNLVGSNYVMGVAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318535_102339501	3300031764	Soil	LVGSNYVMGVAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318554_100837632	3300031765	Soil	NLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPG
Ga0318554_104493731	3300031765	Soil	ILYRINAATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318509_103311731	3300031768	Soil	LYRINLATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNAGLYRIDTKTGFETAIAALPFGSSSDLVLMNPRG
Ga0318526_102228851	3300031769	Soil	LVNLVGSNYVMGVAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318546_100604411	3300031771	Soil	LLMGLAFGRDGKLYATDNFPNSGLYVIDAKTGFETAIAALPFGFSSDLELMN
Ga0318498_103678352	3300031778	Soil	LVGSNLVMGLAFGRNGKLYATDNFPNSGMYVIDDNTGFETAIAALPFGFSSDLVLMN
Ga0318552_105549291	3300031782	Soil	LATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPRG
Ga0318548_102110461	3300031793	Soil	TATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318576_105493082	3300031796	Soil	TKLVNLIGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDAKTGFETAIAALPFGFSSDLELMN
Ga0318550_102350421	3300031797	Soil	INLATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318523_100968921	3300031798	Soil	VMGLAFGRNGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMN
Ga0318565_105406181	3300031799	Soil	LATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNAGLYRIDTKTGFETAIAALPFGSSSDLVLMNPDG
Ga0318567_103753871	3300031821	Soil	MGLAFGRNGKLYATDNFNPSGLYVIDTKTGAETTIAALPFGFSSDLVLMNPGE
Ga0318512_104306411	3300031846	Soil	TGTATKLVNLTGSNYVMGLAFGRDGKLYATDAFANPGLYRVGATTGLETAIAALPFGFSSGLELMNPSG
Ga0318527_104985862	3300031859	Soil	TKLFDLTGPSNYLMGLAFGRDGKLYATDNFNPSGLYVIDTKTGAETTIAALPFGFSSDLVLMSPDE
Ga0306919_101064281	3300031879	Soil	ILYRINAATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNAGLYRIDTKTGFETAIAALPFGSSSDLVLMNPRG
Ga0306919_111595551	3300031879	Soil	TGKATKLFNLVGSNTVMGLAFGPDGKLYATDFTQNPGLYRIDTKTGFETAIAALPFGFSSGLELIGSGR
Ga0318536_102019502	3300031893	Soil	LVMGLAFGRNGKLYGTDNFPNSGLYLIDAKTGFETAIAALPFGFSSDLVLMNQRG
Ga0318522_100705912	3300031894	Soil	VNLVGSNYVMGLAFGRDGRLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318522_101970412	3300031894	Soil	LVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0306921_101322204	3300031912	Soil	NYVMGLAFGRDGKLYATDNFNPSGLYVIGTKTGAETTIAALPFGSSSDLVLMNPDE
Ga0306921_116844941	3300031912	Soil	TKLVNLVGSNLVMGLAFGRNGKLYGTDNFPNSGLYLIDAKTGFETAIAALPFGFSSDLVLMNQRG
Ga0310913_103752561	3300031945	Soil	LYRIDPAKGTATKLVNLVGSNYVMGLAFGRDGKLYGTDAFPNSGLYRIDPKTGFETAIAALPFGSSSDLVLMNPGG
Ga0310910_102119182	3300031946	Soil	RTGQAAPLFNLTGPSNYVMGLAFGRDGKLYATDNFNPSGLYVIGTKTGAETTIAALPFGSSSDLVLMNPGE
Ga0310910_104648102	3300031946	Soil	IDPAKGTATKLVNLVGSNYVMGLAFGRDGKLYGTDAFPNSGLYRIDPKTGFETAIAALPFGSSSDLVLMNPGG
Ga0310909_100722801	3300031947	Soil	IGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDAKTGFETAIAALPFGFSSDLELMN
Ga0310909_107224851	3300031947	Soil	GTATKLVNLVGSNYVMGLAFGRDGKLYGTDAFPNSGLYRIDPKTGFETAIAALPFGSSSDLVLMNPRG
Ga0306926_108588691	3300031954	Soil	ATGKATKLVNLVGSNYVMGLAFGRDGKLYGTDAFANPGLYRVGATTGLQTAIAALPFGFPAAWN
Ga0306926_120890141	3300031954	Soil	AATGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318530_104617551	3300031959	Soil	IDPATGTAAKLFNLVGSNLVMGLAFGRNGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMN
Ga0318562_103108251	3300032008	Soil	ATGTATPLFNLTGPSNYVMGLAFGRDGKLYATDNFNPSGLYVIDTKTGAETTIAALPFGFSSDLVLMNPDE
Ga0318563_103005861	3300032009	Soil	ATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0310911_108046461	3300032035	Soil	GLAFGRNGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMS
Ga0318556_106075541	3300032043	Soil	LVGSNYVMGLAFGRDGKLYATDAFPNAGLYRIDTKTGFETAIAALPFGSSSDLVLMNPDG
Ga0318506_100147323	3300032052	Soil	VNLVGSNYVMGLAFGRDGKLYATDAFPNAGLYRIDTKTGFETAIAALPFGSSSDLVLMNPRG
Ga0318575_102314472	3300032055	Soil	FNLVGSNLVMGLAFGRNGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMN
Ga0318504_103240002	3300032063	Soil	PATGTATKLVNLVGSNTVMGLAFGRDGKLYATDFVQNPGLYRIDPATGFQTAIAALPFGSSSGLELTG
Ga0318514_101255842	3300032066	Soil	TNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDAKTGFETAIAALPFGFSSDLVLMDSGG
Ga0306924_100874223	3300032076	Soil	TGTATKLVNLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0306924_124909891	3300032076	Soil	TGTATKLVNLVGSNLMMGLAFGRNGKLYGTDNFPNSGLYLIDAKTGFETAIAALPFGFSSDLVLMN
Ga0318525_103251342	3300032089	Soil	RINPATGTATKLANLVGSNYVMGLAFGRDGKLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318518_103281272	3300032090	Soil	YRVNPATGTATKLVNLVGSNYVMGLAFGRDGRLYATDAFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318540_100416421	3300032094	Soil	SNLVMGLAFGRDGKLYATDNFPNSGLYRIDTKTGFETAIAALPFGSSSDLVLMNPGG
Ga0318540_105709761	3300032094	Soil	LYHIDPTTGTATKLVNLVGSNYVMGLAFGRDGKLYGTDNFANPGLYRIDPTTGLETAIAALPFGYSSDLVSMN
Ga0306920_1002208951	3300032261	Soil	LATGQAAPLFNLTGPSNYVMGLAFGRDGKLYATDNFNPSGLYLIGTKTGAETTIAALPFGSSSDLVLMNPGE
Ga0306920_1008710203	3300032261	Soil	TKLVNLVGSNLVMGLAFGRDGKLYATDNFPNSGLYVIDAKTGFETAIAALPFGFSSDLELMN
Ga0306920_1015362682	3300032261	Soil	RIDPATGTAAKLFNLVGSNLVMGLAFGRNGKLYATDNFPNSGLYVIDTKTGFETAIAALPFGFSSDLVLMN
Ga0306920_1027478761	3300032261	Soil	ATKLVNLVGSNLVMGLAFGRDGKLYGTDNFADPGLYRIDPTTGFETAIAALPFGYSSDLVSVN
Ga0310914_111734882	3300033289	Soil	GTAMKLFNLVGSNLVMGLAFGRDGKLYGTDNFANSGLYVIGTRTGFETAIAALPFGFSSDLVLMN
Ga0310914_115421642	3300033289	Soil	LFDLTGPSNYLMGLAFGRDGKLYATDNFNPSGLYVIDTKTGAETTIAALPFGFSSDLVLMSPDE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101285

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences