Metagenome / Metatranscriptome Family F101336

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101336
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	40 residues
Representative Sequence	PTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWQATY
Number of Associated Samples	67
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.647 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine (29.412 % of family members)
Environment Ontology (ENVO)	Unclassified (82.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (80.392 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 15.38% Coil/Unstructured: 84.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01678	DAP_epimerase	81.37
PF02881	SRP54_N	12.75
PF11700	ATG22	2.94
PF02885	Glycos_trans_3N	0.98
PF12146	Hydrolase_4	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0253	Diaminopimelate epimerase	Amino acid transport and metabolism [E]	81.37

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
All Organisms	root	All Organisms	32.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
cellular organisms	root	All Organisms → cellular organisms	32.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	27.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	27.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	27.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.65 %
Candidatus Pelagibacter ubique	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	7.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000186\|LPfeb10P162000mDRAFT_c1006303	Not Available	865	Open in IMG/M
3300000322\|LPaug08P121000mDRAFT_1041985	Not Available	509	Open in IMG/M
3300001680\|KiloMoana_10106105	Not Available	1029	Open in IMG/M
3300001769\|supr60_1038814	Not Available	693	Open in IMG/M
3300005429\|Ga0066846_10248143	Not Available	585	Open in IMG/M
3300005597\|Ga0066832_10199860	Not Available	597	Open in IMG/M
3300005603\|Ga0066853_10250212	Not Available	584	Open in IMG/M
3300005948\|Ga0066380_10065838	Not Available	1040	Open in IMG/M
3300005951\|Ga0066379_10203957	Not Available	638	Open in IMG/M
3300006011\|Ga0066373_10172161	Not Available	628	Open in IMG/M
3300006076\|Ga0081592_1091806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1227	Open in IMG/M
3300006306\|Ga0068469_1192235	Not Available	689	Open in IMG/M
3300006308\|Ga0068470_1468479	Not Available	615	Open in IMG/M
3300006309\|Ga0068479_1297810	Not Available	913	Open in IMG/M
3300006310\|Ga0068471_1150946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	3754	Open in IMG/M
3300006310\|Ga0068471_1436947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	775	Open in IMG/M
3300006313\|Ga0068472_10244631	Not Available	1010	Open in IMG/M
3300006313\|Ga0068472_10340103	Not Available	669	Open in IMG/M
3300006313\|Ga0068472_10340732	Not Available	994	Open in IMG/M
3300006313\|Ga0068472_10347946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3352	Open in IMG/M
3300006313\|Ga0068472_10409726	Not Available	810	Open in IMG/M
3300006313\|Ga0068472_10425707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1094	Open in IMG/M
3300006313\|Ga0068472_10478275	Not Available	693	Open in IMG/M
3300006313\|Ga0068472_10571140	Not Available	515	Open in IMG/M
3300006313\|Ga0068472_10687417	Not Available	616	Open in IMG/M
3300006313\|Ga0068472_10735414	Not Available	621	Open in IMG/M
3300006313\|Ga0068472_10740780	Not Available	681	Open in IMG/M
3300006313\|Ga0068472_10761488	Not Available	531	Open in IMG/M
3300006313\|Ga0068472_10785973	Not Available	701	Open in IMG/M
3300006313\|Ga0068472_11129311	Not Available	725	Open in IMG/M
3300006315\|Ga0068487_1394138	Not Available	543	Open in IMG/M
3300006326\|Ga0068477_1149196	Not Available	897	Open in IMG/M
3300006326\|Ga0068477_1493756	Not Available	948	Open in IMG/M
3300006330\|Ga0068483_1299127	Not Available	713	Open in IMG/M
3300006331\|Ga0068488_1155217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1536	Open in IMG/M
3300006331\|Ga0068488_1589399	Not Available	500	Open in IMG/M
3300006331\|Ga0068488_1651322	Not Available	707	Open in IMG/M
3300006331\|Ga0068488_1712282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	813	Open in IMG/M
3300006336\|Ga0068502_1343469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1290	Open in IMG/M
3300006339\|Ga0068481_1325057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1553	Open in IMG/M
3300006339\|Ga0068481_1328568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1172	Open in IMG/M
3300006340\|Ga0068503_10668203	Not Available	801	Open in IMG/M
3300006341\|Ga0068493_10286122	Not Available	994	Open in IMG/M
3300006341\|Ga0068493_10317739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	3790	Open in IMG/M
3300006341\|Ga0068493_10479433	Not Available	671	Open in IMG/M
3300006341\|Ga0068493_10513916	Not Available	893	Open in IMG/M
3300006341\|Ga0068493_10558201	Not Available	687	Open in IMG/M
3300006341\|Ga0068493_10564416	Not Available	779	Open in IMG/M
3300006341\|Ga0068493_10747381	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300006567\|Ga0099958_1178023	Not Available	799	Open in IMG/M
3300006902\|Ga0066372_10478444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	729	Open in IMG/M
3300007283\|Ga0066366_10276411	Not Available	708	Open in IMG/M
3300007283\|Ga0066366_10389494	Not Available	604	Open in IMG/M
3300007514\|Ga0105020_1022197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	6044	Open in IMG/M
3300007514\|Ga0105020_1114574	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300007514\|Ga0105020_1116272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2010	Open in IMG/M
3300008223\|Ga0105348_1097104	Not Available	872	Open in IMG/M
3300008253\|Ga0105349_10265932	Not Available	713	Open in IMG/M
3300009104\|Ga0117902_1421487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1173	Open in IMG/M
3300009173\|Ga0114996_10510992	Not Available	904	Open in IMG/M
3300009481\|Ga0114932_10908680	Not Available	507	Open in IMG/M
3300009703\|Ga0114933_10210787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1313	Open in IMG/M
3300009703\|Ga0114933_10705875	Not Available	646	Open in IMG/M
3300009703\|Ga0114933_10988334	Not Available	533	Open in IMG/M
3300009706\|Ga0115002_10784148	Not Available	667	Open in IMG/M
3300009786\|Ga0114999_10444682	Not Available	1011	Open in IMG/M
3300010883\|Ga0133547_10273980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3524	Open in IMG/M
3300012950\|Ga0163108_11094135	Not Available	514	Open in IMG/M
3300018606\|Ga0193025_1011474	Not Available	623	Open in IMG/M
3300020369\|Ga0211709_10173144	Not Available	654	Open in IMG/M
3300020425\|Ga0211549_10161240	Not Available	880	Open in IMG/M
3300020425\|Ga0211549_10207994	Not Available	777	Open in IMG/M
3300020454\|Ga0211548_10204264	Not Available	958	Open in IMG/M
3300020459\|Ga0211514_10133465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1233	Open in IMG/M
3300020476\|Ga0211715_10008473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	5815	Open in IMG/M
3300020477\|Ga0211585_10207523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1232	Open in IMG/M
3300020478\|Ga0211503_10162311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1277	Open in IMG/M
3300020478\|Ga0211503_10313233	Not Available	855	Open in IMG/M
3300020478\|Ga0211503_10680362	Not Available	529	Open in IMG/M
3300021065\|Ga0206686_1169845	Not Available	634	Open in IMG/M
3300021442\|Ga0206685_10280201	Not Available	565	Open in IMG/M
3300021980\|Ga0232637_10481373	Not Available	612	Open in IMG/M
3300025184\|Ga0208832_101024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	4456	Open in IMG/M
3300025235\|Ga0208206_1039660	Not Available	607	Open in IMG/M
3300026074\|Ga0208747_1023110	Not Available	1502	Open in IMG/M
3300026321\|Ga0208764_10430138	Not Available	615	Open in IMG/M
3300027755\|Ga0209034_10173010	Not Available	674	Open in IMG/M
3300027844\|Ga0209501_10039720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	3483	Open in IMG/M
3300027844\|Ga0209501_10348832	Not Available	892	Open in IMG/M
3300028487\|Ga0257109_1033635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1690	Open in IMG/M
3300031757\|Ga0315328_10326002	Not Available	896	Open in IMG/M
3300031801\|Ga0310121_10142485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1500	Open in IMG/M
3300031802\|Ga0310123_10144739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1629	Open in IMG/M
3300031803\|Ga0310120_10180564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1165	Open in IMG/M
3300031811\|Ga0310125_10128108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1327	Open in IMG/M
3300031886\|Ga0315318_10343053	Not Available	856	Open in IMG/M
3300032006\|Ga0310344_10463041	Not Available	1088	Open in IMG/M
3300032019\|Ga0315324_10106480	Not Available	1054	Open in IMG/M
3300032130\|Ga0315333_10063824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1668	Open in IMG/M
3300032132\|Ga0315336_1104943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1214	Open in IMG/M
3300032360\|Ga0315334_10314138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1307	Open in IMG/M
3300032360\|Ga0315334_11727384	Not Available	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	66.67%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.75%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	8.82%
Coastal	Environmental → Aquatic → Marine → Coastal	3.92%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	3.92%
Volcanic	Environmental → Aquatic → Marine → Volcanic	3.92%

Habitat	Taxonomy	Distribution
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	29.41%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	25.49%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.75%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	11.76%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	8.82%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	3.92%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	1.96%
Unclassified	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified	0.98%
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	0.98%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	29.41%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	17.65%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	10.78%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	10.78%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	8.82%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	4.90%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	3.92%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	3.92%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.96%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	1.96%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.98%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.98%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	0.98%
Diffuse Hydrothermal Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids	0.98%
Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume	0.98%
Black Smokers Hydrothermal Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000186	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 2000m	Environmental	Open in IMG/M
3300000322	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P12 1000m	Environmental	Open in IMG/M
3300001680	Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean	Environmental	Open in IMG/M
3300001769	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Shallow Background Supr60	Environmental	Open in IMG/M
3300005429	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76	Environmental	Open in IMG/M
3300005597	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B	Environmental	Open in IMG/M
3300005603	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61	Environmental	Open in IMG/M
3300005948	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_O2min_ad_571m_LV	Environmental	Open in IMG/M
3300005951	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300006011	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV	Environmental	Open in IMG/M
3300006076	Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid A	Environmental	Open in IMG/M
3300006306	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m	Environmental	Open in IMG/M
3300006308	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m	Environmental	Open in IMG/M
3300006309	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0500m	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006313	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m	Environmental	Open in IMG/M
3300006315	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0770m	Environmental	Open in IMG/M
3300006326	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m	Environmental	Open in IMG/M
3300006330	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000m	Environmental	Open in IMG/M
3300006331	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m	Environmental	Open in IMG/M
3300006336	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m	Environmental	Open in IMG/M
3300006339	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006341	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m	Environmental	Open in IMG/M
3300006567	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0770m	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300007283	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B	Environmental	Open in IMG/M
3300007514	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a	Environmental	Open in IMG/M
3300008223	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8C Hudson Canyon	Environmental	Open in IMG/M
3300008253	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon	Environmental	Open in IMG/M
3300009104	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um	Environmental	Open in IMG/M
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009703	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG	Environmental	Open in IMG/M
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300012950	Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG	Environmental	Open in IMG/M
3300018606	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_149 - TARA_N000002509 (ERX1782176-ERR1711960)	Environmental	Open in IMG/M
3300020369	Marine microbial communities from Tara Oceans - TARA_B100000446 (ERX556016-ERR599044)	Environmental	Open in IMG/M
3300020425	Marine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)	Environmental	Open in IMG/M
3300020454	Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)	Environmental	Open in IMG/M
3300020459	Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)	Environmental	Open in IMG/M
3300020476	Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)	Environmental	Open in IMG/M
3300020477	Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)	Environmental	Open in IMG/M
3300020478	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)	Environmental	Open in IMG/M
3300021065	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300021980	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Burke_FS924 _150kmer	Environmental	Open in IMG/M
3300025184	Marine microbial communities from the Deep Pacific Ocean - MP2158 (SPAdes)	Environmental	Open in IMG/M
3300025235	Marine microbial communities from the Deep Pacific Ocean - MP1483 (SPAdes)	Environmental	Open in IMG/M
3300026074	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A (SPAdes)	Environmental	Open in IMG/M
3300026321	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)	Environmental	Open in IMG/M
3300027755	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300028487	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M
3300031801	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986	Environmental	Open in IMG/M
3300031802	Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057	Environmental	Open in IMG/M
3300031803	Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983	Environmental	Open in IMG/M
3300031811	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8	Environmental	Open in IMG/M
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental	Open in IMG/M
3300032006	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG	Environmental	Open in IMG/M
3300032019	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 21515	Environmental	Open in IMG/M
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental	Open in IMG/M
3300032132	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LPfeb10P162000mDRAFT_10063031	3300000186	Marine	NSFIPTKIALVGEPSLTSVDTFVSKGTAKTSFCGNSWQATY*
LPaug08P121000mDRAFT_10419852	3300000322	Marine	FIPTKITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
KiloMoana_101061051	3300001680	Black Smokers Hydrothermal Plume	TYFIIPTKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
supr60_10388142	3300001769	Hydrothermal Vent Plume	NSFIPTKTALAGEPSLTSVDPFVSKGTAKTSLCGNSTQPTY*
Ga0066846_102481432	3300005429	Marine	PTKITLVGEPSLTSVDPFVSKGTAKTFFCGNTWQTTYRGSKSQ*
Ga0066832_101998601	3300005597	Marine	IALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0066853_102502122	3300005603	Marine	ITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQATY*
Ga0066380_100658382	3300005948	Marine	FIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSRQATY*
Ga0066379_102039571	3300005951	Marine	IFKHNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSRQATY*
Ga0066373_101721611	3300006011	Marine	GEPSLTSVDPFVPKGTAKTFFCGNRRQATYRGSKSQQIKIKLKI*
Ga0081592_10918061	3300006076	Diffuse Hydrothermal Fluids	AKNALVDEPSLTSVDPFASKGTAKTFFCGNSWQTTY*
Ga0068469_11922351	3300006306	Marine	IPTKIALVGEPSLTSVDPFVSKGTAKIFFCGNCWQTTY*
Ga0068470_14684791	3300006308	Marine	LSKKIFKHNSFIPTKITLVGEPSLTSVDPFVSKGTAKTSFCGNSQQAIY*
Ga0068479_12978101	3300006309	Marine	YIFKHNSFIPTKIALVGEPSLTSVDPFVAKGTAKTLLCGNSPQATY*
Ga0068471_11509461	3300006310	Marine	PTKDALVGEPSLTSVDPSVPKGTAKISFCGNSWQTTY*
Ga0068471_14369471	3300006310	Marine	IPTNTALVGEPSLTSVDPSVSKGTAKTSLCGNSPQATY*
Ga0068472_102446311	3300006313	Marine	IALVGEPSLTSVDPFVPKGTAKTFFCGNRWQTTYRGSKSQ*
Ga0068472_103401031	3300006313	Marine	EPSLTSVAPFVPKGTAKTFFCGNRWQTTYRGSKSQ*
Ga0068472_103407321	3300006313	Marine	PSTDQIFKHNSFIPTQIALVGEPSLTNVDPFVSKGTAKTSFCVNSWQATY*
Ga0068472_103479466	3300006313	Marine	IPAKHALVGEPSLTCVDPFVSKGTAKTSLCGNSTQATY*
Ga0068472_104097261	3300006313	Marine	HNSFIPTKTALVGEPSLTSVDPFVSKGTAKTSLCGNSTQPTY*
Ga0068472_104257071	3300006313	Marine	PTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWQATY*
Ga0068472_104782751	3300006313	Marine	TKITLVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068472_105711402	3300006313	Marine	FKHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSRQATY*
Ga0068472_106874171	3300006313	Marine	IFKHNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNRWQTTY*
Ga0068472_107354141	3300006313	Marine	NALVGEPSLTSVDPSVSKGTAKTFFCGNSWQTTY*
Ga0068472_107407801	3300006313	Marine	HNILTPTNIALVGEPSLTSVDPFVPKGTAKTFFCGNRRQATYRGSKSQ*
Ga0068472_107614882	3300006313	Marine	PAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0068472_107859732	3300006313	Marine	KIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
Ga0068472_111293111	3300006313	Marine	AKNALVGEPSLTSVDPFVSKGTAKTFFCGNSPQATY*
Ga0068487_13941381	3300006315	Marine	FKHNLSIPTTIALVGEPSLTSVDPFVSKGTAKTYFCGNKQQTTY*
Ga0068477_11491962	3300006326	Marine	IALVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068477_14937562	3300006326	Marine	NALVGEPSLTSVDPFVSKGTAKTSFCVNSWQTTY*
Ga0068483_12991271	3300006330	Marine	NSLVGEPSLTSVDPFASKGTAKTFFCGNSRQATY*
Ga0068488_11552171	3300006331	Marine	HNTFIPTKDALVGEPSLTSVDPFVTKGTAKTFFCGNSWQTTYGSKSQ
Ga0068488_15893991	3300006331	Marine	SFIPTKITLVGEPSLTSVDPFVSKDTAKTFFCGNSWQATY*
Ga0068488_16513221	3300006331	Marine	IIPTTIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
Ga0068488_17122823	3300006331	Marine	KIALVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068502_13434691	3300006336	Marine	IPTKNALVGEPSLTSVDPFASKGTAKTSFCGNSWQATY*
Ga0068481_13250573	3300006339	Marine	FIPTKIALVGEPSLTSVDPFVSKGTAKTYFCGNSQQTTY*
Ga0068481_13285683	3300006339	Marine	TQIALVGEPSLTSVDPFVSKGTAKTTFCGNSQQTTY*
Ga0068503_106682032	3300006340	Marine	AKITLVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068493_102861221	3300006341	Marine	IIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQATY*
Ga0068493_103177391	3300006341	Marine	TALVGEPSLTSVDPFVSKDTAKTSLCGNNTQATY*
Ga0068493_104794331	3300006341	Marine	QTYFLIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
Ga0068493_105139162	3300006341	Marine	KHNSFIPTKIALVGEHSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068493_105582012	3300006341	Marine	NALVGEPSLTSVDPFVSKGTAKTSLCGNSTQPTY*
Ga0068493_105644161	3300006341	Marine	NALVGEPSLTSVDPFVSKGTAKTFFCGNSQQATY*
Ga0068493_107473812	3300006341	Marine	KNALVDEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0099958_11780232	3300006567	Marine	PAKNALVGEPSLTSVDLFVSKDTAKTSFCGNSWQTTY*
Ga0066372_104784441	3300006902	Marine	IFKHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWQTTY*
Ga0066366_102764111	3300007283	Marine	ALVGEPSLTSVDPFVSKGTAKTFFCGNRWQTIYRGSKSQ*
Ga0066366_103894941	3300007283	Marine	IPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNRQQTTY*
Ga0105020_10221971	3300007514	Marine	IFKHNLFIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWEITY*
Ga0105020_11145741	3300007514	Marine	HNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0105020_11162723	3300007514	Marine	HNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQATY*
Ga0105348_10971042	3300008223	Methane Seep Mesocosm	HNSFIPTKITLVGEPSLTSVDPFVAKGTAKTFFCGNKWQTTY*
Ga0105349_102659321	3300008253	Methane Seep Mesocosm	FKHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSQQTTYRGSKSQ*
Ga0117902_14214871	3300009104	Marine	KIALVGEPSLTSVDPFVSKGTAKTYFCGNSQQTTY*
Ga0114996_105109921	3300009173	Marine	KHNSFIPTKIALVGEPSLTSVDPFVAKGTAKTFFCGNSLQITY*
Ga0114932_109086802	3300009481	Deep Subsurface	IFPTKIALVGEPSLTSVDPFVSKGTAKTLFCGNTLESTY*
Ga0114933_102107871	3300009703	Deep Subsurface	ALVGEPSLTSVDPFVSKGTAKTYFCGNNSQTIYRGSKSQQIKIKV*
Ga0114933_107058752	3300009703	Deep Subsurface	IPAQIALVGEPSLTSVDPFVSKGTAKTSFCGNRQQTTY*
Ga0114933_109883342	3300009703	Deep Subsurface	KHNSFIPAKIALVGEPSLTSVDPFVPKGTAKTSFCGNSWETTY*
Ga0115002_107841481	3300009706	Marine	IPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNNWQTTY*
Ga0114999_104446822	3300009786	Marine	FIPTKIALVGEPSLTSVDPFVAKGTAKTFFCGNSLQITY*
Ga0133547_102739801	3300010883	Marine	IALVGEPSLTSVDPFVSKGTAKAFVCGNWLQITH*
Ga0163108_110941351	3300012950	Seawater	IALVGEPSLTSVDPFVSKGTAKTFFCGNRWQTTYRGSKSQ*
Ga0193025_10114741	3300018606	Marine	IFKHNLFTPTNIALVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY
Ga0211709_101731441	3300020369	Marine	TKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY
Ga0211549_101612401	3300020425	Marine	GEPSLTSVDPFVPKGTAKTFFCGNRWQATYRGSKSQ
Ga0211549_102079941	3300020425	Marine	TKNALVGEPSLTSVDPFVSKGTAKTSFCGNSWQTTY
Ga0211548_102042642	3300020454	Marine	IPTTIALVGEPSLTSVDPFVSKGTAKTYFCGNKQQTTY
Ga0211514_101334651	3300020459	Marine	NSFIPAKIALVGEPSLTSVDPFVSKGTAKTSFCGNRLQTTY
Ga0211715_100084739	3300020476	Marine	FIPTTIALVGEPSLTSVDPFVSKGTAKTYFCGNKQQTTY
Ga0211585_102075231	3300020477	Marine	KIALVGEPSLTSVDPFVSKGTAKTFFCGNRGQTTY
Ga0211503_101623111	3300020478	Marine	TKIALVGEPSLTSVDPFVSKGTAKTFFCGNNWQTTY
Ga0211503_103132331	3300020478	Marine	TKIALVGEPSLTSVDPFVSKGTAKTFFCGNSRQITY
Ga0211503_106803621	3300020478	Marine	EPSLTSVDPFVSKGTAKTIFCGNSKQTIYRGSKSQ
Ga0206686_11698451	3300021065	Seawater	LLNFQTYFIIPTTITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY
Ga0206685_102802012	3300021442	Seawater	IFPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY
Ga0232637_104813731	3300021980	Hydrothermal Vent Fluids	HNSFIPTKIALVGEPSLTSVDTFVFKGTAKTSFCGNSWQATY
Ga0208832_1010246	3300025184	Deep Ocean	SFIPTKIALVGESSLTSVDTFVSKGTAKTSFYGNSWQATY
Ga0208206_10396602	3300025235	Deep Ocean	SFIPTKTALVGEPSLTSVDPFVSKGTAKTSLCGNSWQATY
Ga0208747_10231101	3300026074	Marine	HNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWKTTYSGSKSQ
Ga0208764_104301381	3300026321	Marine	FIPTKIALVGEPSLTSVDPFVSKGTAKTYFCGNRQQTTY
Ga0209034_101730101	3300027755	Marine	PTKSALVGEPSLTSVDPFASKGTAKTSLCGNSTQPTY
Ga0209501_100397206	3300027844	Marine	PTKITLVGEPSLTSVDPFVSKGTAKTSFCGNSQQTTY
Ga0209501_103488321	3300027844	Marine	FIPTKIALVGEPSLTSVDPFVAKGTAKTFFCGNSLQITY
Ga0257109_10336351	3300028487	Marine	VGEPSLTSVDPFVPKGTAKTFFCGNRWQTTYRGSKSQ
Ga0315328_103260022	3300031757	Seawater	KIALAGEPSLTSVDPFASKGTAKTSFCGNSQQATY
Ga0310121_101424851	3300031801	Marine	NSFIPANNALVGEPSLTSVDLFVSKDTAKTSFCGNSWQTTY
Ga0310123_101447391	3300031802	Marine	PFIPAKHALVGEPSLTSVDLFVSKDTAKTSFCGNSWQTTY
Ga0310120_101805643	3300031803	Marine	FIPTKIALVGEPSLTSVDTFVSKGTAKTSFCGNSWQATY
Ga0310125_101281083	3300031811	Marine	PTKNALVGEPSLTSVDPFVSKGTAKTSFCVNSWQATY
Ga0315318_103430531	3300031886	Seawater	LFTPTNIALVGEPSLTSVDPFVSKGTAKTFFCGNRWQITYRGSKSQ
Ga0310344_104630411	3300032006	Seawater	KHNSFIPTKITLVGEPSLTSVDPFVAKGTAKTSFCGNRWQTTY
Ga0315324_101064802	3300032019	Seawater	KHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWKTTYSGSKSQ
Ga0315333_100638243	3300032130	Seawater	VFKHNLFTPTNIALVGEPSLTSVDPFVPKGTAKTFFCGNRWQATYRGSKSQ
Ga0315336_11049431	3300032132	Seawater	KITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY
Ga0315334_103141381	3300032360	Seawater	TYFIIPTTITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQITYRGSKSQ
Ga0315334_117273842	3300032360	Seawater	NLFIPTNIALVGETSLTSVDPFVPKGTAKTFFCGNRWETTYRGSKSQQIKIKLKI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101336

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences