Metagenome / Metatranscriptome Family F101479

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101479
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	76 residues
Representative Sequence	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGAT
Number of Associated Samples	97
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.79 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.020 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (30.392 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.61% β-sheet: 23.61% Coil/Unstructured: 52.78%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04972	BON	83.33
PF13714	PEP_mutase	7.84
PF14595	Thioredoxin_9	2.94
PF04909	Amidohydro_2	2.94
PF02771	Acyl-CoA_dh_N	0.98
PF02615	Ldh_2	0.98
PF01614	IclR	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.98
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.98
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	88.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	88.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	88.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	11.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Unclassified	root	N/A	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_101244673	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	501	Open in IMG/M
3300000955\|JGI1027J12803_106882743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	683	Open in IMG/M
3300001661\|JGI12053J15887_10607145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	520	Open in IMG/M
3300002558\|JGI25385J37094_10074954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1067	Open in IMG/M
3300002561\|JGI25384J37096_10173852	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300002562\|JGI25382J37095_10167068	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	693	Open in IMG/M
3300002562\|JGI25382J37095_10275529	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	506	Open in IMG/M
3300002886\|JGI25612J43240_1082226	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	510	Open in IMG/M
3300002912\|JGI25386J43895_10076932	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	900	Open in IMG/M
3300004267\|Ga0066396_10003518	All Organisms → cellular organisms → Bacteria → Proteobacteria	1580	Open in IMG/M
3300005171\|Ga0066677_10674697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	580	Open in IMG/M
3300005172\|Ga0066683_10759015	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	568	Open in IMG/M
3300005174\|Ga0066680_10862898	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	540	Open in IMG/M
3300005289\|Ga0065704_10667087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	575	Open in IMG/M
3300005332\|Ga0066388_102303342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	975	Open in IMG/M
3300005440\|Ga0070705_100871383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	722	Open in IMG/M
3300005447\|Ga0066689_10825025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	575	Open in IMG/M
3300005447\|Ga0066689_10845321	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	567	Open in IMG/M
3300005467\|Ga0070706_100486343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1148	Open in IMG/M
3300005467\|Ga0070706_101073544	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	741	Open in IMG/M
3300005471\|Ga0070698_100472438	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1190	Open in IMG/M
3300005574\|Ga0066694_10212721	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	917	Open in IMG/M
3300005587\|Ga0066654_10228088	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	976	Open in IMG/M
3300006194\|Ga0075427_10020835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1041	Open in IMG/M
3300006800\|Ga0066660_10497083	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1025	Open in IMG/M
3300006844\|Ga0075428_101556033	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	692	Open in IMG/M
3300006871\|Ga0075434_100473668	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1273	Open in IMG/M
3300006914\|Ga0075436_101150431	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	585	Open in IMG/M
3300006954\|Ga0079219_12396496	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	512	Open in IMG/M
3300007076\|Ga0075435_100229288	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1578	Open in IMG/M
3300009012\|Ga0066710_103495720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	594	Open in IMG/M
3300009137\|Ga0066709_103175846	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	600	Open in IMG/M
3300009792\|Ga0126374_10240495	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1175	Open in IMG/M
3300009810\|Ga0105088_1011112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1335	Open in IMG/M
3300010132\|Ga0127455_1099545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	593	Open in IMG/M
3300010140\|Ga0127456_1079383	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	749	Open in IMG/M
3300010303\|Ga0134082_10413279	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	579	Open in IMG/M
3300010335\|Ga0134063_10104955	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1284	Open in IMG/M
3300010359\|Ga0126376_10338596	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1328	Open in IMG/M
3300010360\|Ga0126372_10118722	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2038	Open in IMG/M
3300010361\|Ga0126378_10935030	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	973	Open in IMG/M
3300010362\|Ga0126377_11388626	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	775	Open in IMG/M
3300010366\|Ga0126379_11266918	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	843	Open in IMG/M
3300010400\|Ga0134122_10305011	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1368	Open in IMG/M
3300010401\|Ga0134121_11911676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	623	Open in IMG/M
3300012199\|Ga0137383_11021101	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	602	Open in IMG/M
3300012207\|Ga0137381_10562328	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	994	Open in IMG/M
3300012362\|Ga0137361_10299726	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1471	Open in IMG/M
3300012379\|Ga0134058_1174839	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	779	Open in IMG/M
3300012397\|Ga0134056_1023897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	832	Open in IMG/M
3300012406\|Ga0134053_1381933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	893	Open in IMG/M
3300012922\|Ga0137394_10402351	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1167	Open in IMG/M
3300012923\|Ga0137359_10424010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1178	Open in IMG/M
3300012927\|Ga0137416_10719073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	878	Open in IMG/M
3300012930\|Ga0137407_12182874	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	529	Open in IMG/M
3300012972\|Ga0134077_10044153	All Organisms → cellular organisms → Bacteria → Proteobacteria	1627	Open in IMG/M
3300015245\|Ga0137409_11227468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	591	Open in IMG/M
3300015357\|Ga0134072_10382571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	549	Open in IMG/M
3300015372\|Ga0132256_101153833	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	889	Open in IMG/M
3300016357\|Ga0182032_10185283	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1572	Open in IMG/M
3300016371\|Ga0182034_10898459	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	762	Open in IMG/M
3300017656\|Ga0134112_10029002	All Organisms → cellular organisms → Bacteria	1938	Open in IMG/M
3300017659\|Ga0134083_10299436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	682	Open in IMG/M
3300018078\|Ga0184612_10365545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	730	Open in IMG/M
3300018084\|Ga0184629_10238850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	947	Open in IMG/M
3300018431\|Ga0066655_10888547	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300021086\|Ga0179596_10219435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	931	Open in IMG/M
3300025981\|Ga0207640_12163151	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	505	Open in IMG/M
3300026277\|Ga0209350_1060810	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1079	Open in IMG/M
3300026310\|Ga0209239_1058901	All Organisms → cellular organisms → Bacteria	1708	Open in IMG/M
3300026332\|Ga0209803_1263353	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
3300026334\|Ga0209377_1204615	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	658	Open in IMG/M
3300027873\|Ga0209814_10030280	All Organisms → cellular organisms → Bacteria	2226	Open in IMG/M
3300028381\|Ga0268264_11741365	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	633	Open in IMG/M
3300031544\|Ga0318534_10183312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1209	Open in IMG/M
3300031561\|Ga0318528_10063558	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1890	Open in IMG/M
3300031562\|Ga0310886_10453784	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	766	Open in IMG/M
3300031564\|Ga0318573_10030200	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2530	Open in IMG/M
3300031713\|Ga0318496_10751412	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	537	Open in IMG/M
3300031723\|Ga0318493_10025090	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2668	Open in IMG/M
3300031740\|Ga0307468_100455368	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	998	Open in IMG/M
3300031764\|Ga0318535_10314494	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	700	Open in IMG/M
3300031770\|Ga0318521_10521866	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	715	Open in IMG/M
3300031771\|Ga0318546_10053157	All Organisms → cellular organisms → Bacteria	2530	Open in IMG/M
3300031805\|Ga0318497_10033851	All Organisms → cellular organisms → Bacteria	2563	Open in IMG/M
3300031820\|Ga0307473_10006591	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3873	Open in IMG/M
3300031846\|Ga0318512_10035933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2151	Open in IMG/M
3300031858\|Ga0310892_11036808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	579	Open in IMG/M
3300031912\|Ga0306921_11997425	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	618	Open in IMG/M
3300031941\|Ga0310912_10189894	All Organisms → cellular organisms → Bacteria → Proteobacteria	1567	Open in IMG/M
3300031946\|Ga0310910_10159406	All Organisms → cellular organisms → Bacteria → Proteobacteria	1731	Open in IMG/M
3300031981\|Ga0318531_10055732	All Organisms → cellular organisms → Bacteria → Proteobacteria	1687	Open in IMG/M
3300032013\|Ga0310906_10637619	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	738	Open in IMG/M
3300032043\|Ga0318556_10275785	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	878	Open in IMG/M
3300032044\|Ga0318558_10362426	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	720	Open in IMG/M
3300032059\|Ga0318533_10140678	All Organisms → cellular organisms → Bacteria → Proteobacteria	1702	Open in IMG/M
3300032063\|Ga0318504_10369693	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	682	Open in IMG/M
3300032075\|Ga0310890_11376368	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	579	Open in IMG/M
3300032180\|Ga0307471_102652796	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	635	Open in IMG/M
3300034817\|Ga0373948_0026661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1140	Open in IMG/M
3300034817\|Ga0373948_0051588	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	885	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.24%
Host-Associated	Host-Associated	11.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.27%
Plants	Host-Associated → Plants	11.76%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Sediment	Environmental → Aquatic → Sediment	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.47%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Sand	Environmental → Terrestrial → Soil → Sand	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1012446731	3300000955	Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRVDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYEPGASVHPAVALSLIGAYRHGNA
JGI1027J12803_1068827432	3300000955	Soil	MLAQADFQRALSLALGEFAPGWTLVGDCAAVDRSDASHWGSGPQSFQATLRHRVTGHVKVLGRRVAYEPGAT
JGI12053J15887_106071451	3300001661	Forest Soil	MLAQADFQRALALALGEFAPAWTIVGECSAVDRFDASHWGSGPQSFQVMLRHRVTGHLKVLGRR
JGI25385J37094_100749542	3300002558	Grasslands Soil	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYEPSAGLHRAVALSLIEAYR
JGI25384J37096_101738521	3300002561	Grasslands Soil	MLSTADAERALALALGEFGPAWKIIGDCAPVDPFDPSHWDSGSQSIQVTIRHRVTGHLTVLGRRVAYEPGASLHRGVALSLIEAYRHGNGEPLRQ
JGI25382J37095_101670681	3300002562	Grasslands Soil	MXSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYEPSAGLHRAVA
JGI25382J37095_102755291	3300002562	Grasslands Soil	MLAQADFQRALALALGEFAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRASYEPTASLHPAVALSLIGAYRHGNPEPIRRFLEE
JGI25612J43240_10822261	3300002886	Grasslands Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYEPGASVHPAV
JGI25386J43895_100769321	3300002912	Grasslands Soil	MLSAADAERALALALGEFGPAWKIIGDCAPVDPFDPSHWDSGSQSIQVTIRHRVTGHLAVLGRRVAYEPGASLHRGVALSLIEAYRHGNGEPLRQYL
Ga0066396_100035181	3300004267	Tropical Forest Soil	MLAQADFQRALSLALGEFAPAWTLVGDCAAVDRSDASHWGSGPQSFQATLRHRVTGHVKVLGRRRAYEPGATVHPAVALSLVGAYRH
Ga0066677_106746971	3300005171	Soil	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRASYEPTASLHPAVALSL
Ga0066683_107590151	3300005172	Soil	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYEPSA
Ga0066680_108628982	3300005174	Soil	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRTSYEPTASLHPAVALSLIGA
Ga0065704_106670871	3300005289	Switchgrass Rhizosphere	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHRVTGDVKVLGRRASYEPAASVHPAVALSLIG
Ga0066388_1023033421	3300005332	Tropical Forest Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDPADATHWGSSPQSFQVTLRHRVTGHLKV
Ga0070705_1008713832	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLAQADFQRALALALGEFAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRASYEPTASLHPAVALSLIGAY
Ga0066689_108250251	3300005447	Soil	MLSAADAERALALALGEFGPAWKIIGDCAPVDPFDPSHWDSGSQSIQVTIRHRVTGHLTVLGRRVAYEPGASLHRGVALSLIEAYR
Ga0066689_108453212	3300005447	Soil	MLAQADFQRALALALGEFAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRASYEPTASLHPAVALSL
Ga0070706_1004863431	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLAQADFQRALALALGEFAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKV
Ga0070706_1010735441	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKV
Ga0070698_1004724381	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLAQADFQRALALALGEFAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHL
Ga0066694_102127212	3300005574	Soil	MLAQADLQNALAQALREFGPAWKVVSECSPVDPLDPSHWAVGSQSFHVNIRHRVTGRLKVLGRRVAEEPSASLHRAVAQSLVDSYVH
Ga0066654_102280881	3300005587	Soil	MLAQADFQRALALALGEFASAWTIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTG
Ga0075427_100208352	3300006194	Populus Rhizosphere	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHRVTGDVKVLGRRASYEPAASVHPAVALSLIGAYRHGNPEPLRRYL
Ga0066660_104970832	3300006800	Soil	MLAQADFQRALALALGEFASAWTIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGATVHPAGALSLVGAYRHGNSE
Ga0075428_1015560331	3300006844	Populus Rhizosphere	MLAQADFQRALALALGEFAPAWTIVGECSPVDRFDASHWGSGPQSFQVTLRHRVTGHLKV
Ga0075434_1004736684	3300006871	Populus Rhizosphere	MLAQADFQRALALALGEFAEAWAIVGECSPIDRFDSSHWGSGPQSFQVTLRHRVTGHLKV
Ga0075436_1011504312	3300006914	Populus Rhizosphere	MLAQADFQRALALALGEFAEAWTIVGECSPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRV
Ga0079219_123964961	3300006954	Agricultural Soil	MLAQADFQRALALALGEFAEAWAIVGECSPIDRFDSSHWGSGPQSFQVTLRHRVTGHLKVLG
Ga0075435_1002292884	3300007076	Populus Rhizosphere	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRR
Ga0066710_1034957201	3300009012	Grasslands Soil	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRTSYEPTASLH
Ga0066709_1031758461	3300009137	Grasslands Soil	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGPLKVLGRRVPYQPSASLHRAVAPSLIEAYRP
Ga0126374_102404953	3300009792	Tropical Forest Soil	MLAQADFQRALSLALGEFAPAWTLVGDCAAVDRSDASHWGSGPQSFQATLRHRVTGHVKVLGRRRAYE
Ga0105089_10140951	3300009809	Groundwater Sand	LSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYEPSAGLHRAVALSLIEAYRHGNAEPIRQYLEDIGVAATTA
Ga0105088_10111121	3300009810	Groundwater Sand	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYEPSAGLHR
Ga0127455_10995451	3300010132	Grasslands Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRR
Ga0127456_10793831	3300010140	Grasslands Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLK
Ga0134082_104132791	3300010303	Grasslands Soil	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRTSYEPTASLHPAV
Ga0134063_101049551	3300010335	Grasslands Soil	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLK
Ga0126376_103385961	3300010359	Tropical Forest Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAYQPGATVHPAVALSLIGAYRHGNSEPIRAYLAEIGVAA
Ga0126372_101187224	3300010360	Tropical Forest Soil	MLAQADFQRALALALGEFAEAWAIVGECSPIDRVDPSHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGASVHPAVALSLIGAYRHGNPEP
Ga0126378_109350302	3300010361	Tropical Forest Soil	MLAQADFQRALSLALGEFAPGWTLVGDCAPVDRSDASHWGSGPQSFQATLRHRVTGHVKVLGRRSAYEPGATVHPAVALSLVGAYRHGN
Ga0126377_113886262	3300010362	Tropical Forest Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRADATQWGSGPQSFQVTLRHRVTGHLKLLGRRTTYERGATVHPAVALSLIGAYRHGNSEPIRAYLAEIGVAAA
Ga0126379_112669182	3300010366	Tropical Forest Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAYQPGATVHPAV
Ga0134122_103050111	3300010400	Terrestrial Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRVDASHWGSGPQSFQVTLRHRVTGHLK
Ga0134121_119116761	3300010401	Terrestrial Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRVDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYEPGASVHPAVALSL
Ga0137383_110211012	3300012199	Vadose Zone Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYESSASVHPAVALSLIGAYR
Ga0137381_105623282	3300012207	Vadose Zone Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYEPGASVHPAVALSLIGA
Ga0137361_102997263	3300012362	Vadose Zone Soil	MLAQADFQRALALALGELAPAWTIVGECSAVDRLDPTHWGSGPQSFQVTLRHRVTGHLKVLGRRGSYEPTASVHPAVALSLIGAYRHGNPEP
Ga0134058_11748392	3300012379	Grasslands Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGAT
Ga0134056_10238972	3300012397	Grasslands Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVAY
Ga0134053_13819332	3300012406	Grasslands Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGR
Ga0137394_104023513	3300012922	Vadose Zone Soil	MLAQADFQRALALALGEFAPAWAIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRAAYEPGATVHPAVALSLIGAYRHGNSEPIRSFLEEIGAAAVTT
Ga0137359_104240103	3300012923	Vadose Zone Soil	MLAQADFQRALALALGELAPAWTIVGECSAVDRLDPTHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGATVHPAVALPLIGAYRHGNSE
Ga0137416_107190732	3300012927	Vadose Zone Soil	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVSYEPGA
Ga0137407_121828741	3300012930	Vadose Zone Soil	MLAQADFQRALALALGEYAPAWAIVGDCAPVDRFDTSHWGSGPQSFQVTLRHRVTGHLKVLGRRAAYEPGATVH
Ga0134077_100441531	3300012972	Grasslands Soil	MLSLADLERALALALGELGPAWKLVGDCAPVDPFDPSHWDSGSQSFQATLRHRVTGH
Ga0137409_112274681	3300015245	Vadose Zone Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYEP
Ga0134072_103825712	3300015357	Grasslands Soil	MLAQADFQRALALALGELAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRTSYEPTASLHPAVALSLIGAYRHGNPEPIRRFLEEIG
Ga0132256_1011538331	3300015372	Arabidopsis Rhizosphere	MLAQADFQRALALALGEFAEAWAIVGECSPIDRSDSSHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGASIHPAVALSLIGAYRH
Ga0182032_101852831	3300016357	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGR
Ga0182034_108984592	3300016371	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPGATVHPAVAL
Ga0134112_100290021	3300017656	Grasslands Soil	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYEPSAGV
Ga0134083_102994362	3300017659	Grasslands Soil	MLAQADFQRALALALGEFAPAWTIVGECSPVDRLDASHWGSGPQSFQVTLRHRVTGHLKVLGRRTSYEPTASLHPAVA
Ga0184612_103655451	3300018078	Groundwater Sediment	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRR
Ga0184629_102388501	3300018084	Groundwater Sediment	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYEPSAGVHRAVALSLIEAYRHGNAEPIRQ
Ga0066655_108885472	3300018431	Grasslands Soil	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFHVTLRHRVTGHLKVIGRRVAYEPSASLHRAAALSLIEGYRHGNA
Ga0179596_102194352	3300021086	Vadose Zone Soil	MLSLADLERALALALGEFGPAWKIVGDCAPVDPFDPSHWDSGSQSFQVTLRHRVTGHLKVLGRRVAYE
Ga0207640_121631512	3300025981	Corn Rhizosphere	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHRVTGDVKVLGRRASYEPAASVHPAVALSLIRE
Ga0209350_10608101	3300026277	Grasslands Soil	MLAQADFQRALALALGEFASAWTIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGATVHPAVALSLVGAYRHGNSE
Ga0209239_10589011	3300026310	Grasslands Soil	MLAQADFQRALALALGEFASAWTIVGDCAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGATVHPAVALSLV
Ga0209803_12633531	3300026332	Soil	MLSAADAERALALALGEFGPAWKIIGDCAPVDPFDPSHWDSGSQSIQVTIRHRVTGHLTVLGRRVAYEPGASLHRGVALSLIEAYRHGNGEPLRQ
Ga0209377_12046152	3300026334	Soil	MLSLADLERALALALGELGPAWKLVGDCAPVDPFDPSHWDSGSQSFQATLRHRVTGHL
Ga0209814_100302801	3300027873	Populus Rhizosphere	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHRVTGDVKV
Ga0268264_117413652	3300028381	Switchgrass Rhizosphere	MLAQADFQRALALALGEFAEAWTIVGECAPVDRVDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYEPGASVHPAVALSLIGAYRHGNAE
Ga0318534_101833121	3300031544	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPGATVHPAVALSLIGAYRHGNSEPIRAYLAE
Ga0318528_100635583	3300031561	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPGATVHPAVALSLIGAYRH
Ga0310886_104537841	3300031562	Soil	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHRVTGDVKVLGRRASYEPAASVHPAVALSLIGAYRHGNPEP
Ga0318573_100302004	3300031564	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHRGSGPQSFQVTLRH
Ga0318496_107514122	3300031713	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRV
Ga0318493_100250901	3300031723	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLK
Ga0307468_1004553682	3300031740	Hardwood Forest Soil	MLAQADFQRTFSLALGELAPAWAIVGDCAPVDRFDASHWGSGPLSFQVTLRHRVTGHLKVLGRRTAYE
Ga0318535_103144942	3300031764	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPGATVH
Ga0318521_105218661	3300031770	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGASVHPAVAL
Ga0318546_100531571	3300031771	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPGATVHPAVALS
Ga0318497_100338511	3300031805	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVT
Ga0307473_100065911	3300031820	Hardwood Forest Soil	MLAQADFQRALSLALGEFAPGWTLVGDCAAVDRSDASHWGSGPQSFQATLRHRM
Ga0318512_100359331	3300031846	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRETGPLKVLGRR
Ga0310892_110368082	3300031858	Soil	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHR
Ga0306921_119974252	3300031912	Soil	MLAQADFHRALALALGEFAEAWTIVGECASVDRFDATHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGASVHP
Ga0310912_101898941	3300031941	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPGATVHPAVALSLIGAY
Ga0310910_101594063	3300031946	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLG
Ga0318531_100557321	3300031981	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPGATVHPAVALSLIGAYRHGNSEPIRAYLA
Ga0310906_106376192	3300032013	Soil	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHRVTGDVKVLGRRASYEPAASVHPAVALSLIGAYRHG
Ga0318556_102757852	3300032043	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRRTAHQPG
Ga0318558_103624262	3300032044	Soil	MLAQADFQRALALALGEFAEAWTIVGECSSVDRFDAGHWGSGPQSFQVTLRHRVTGHLKVLGRRVAYEPGA
Ga0318533_101406781	3300032059	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRH
Ga0318504_103696931	3300032063	Soil	MLAQADFQRALTLALGEFAPAWAIVGDCSPVDRADATHWGSGPQSFQVTLRHRVTGHLKVLGRR
Ga0310890_113763682	3300032075	Soil	MLAQADFQRALALALGEFAEAWTIVGECAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYEPGAS
Ga0307471_1026527961	3300032180	Hardwood Forest Soil	MLSLADLERALALALGEMGPAWKLVGDCAPVDPFDPSHWDSGSQSFQATLRHRVTGHLKVLG
Ga0373948_0026661_936_1139	3300034817	Rhizosphere Soil	MLAQANFQRALALALGEFAEAWTIVGECAPVDRFDASHWGSGPQSFQVTLRHRVTGHLKVLGRRVTYE
Ga0373948_0051588_687_884	3300034817	Rhizosphere Soil	MLAQADFQRALALALGELAPVWTIVGECSPVDQLDASHWGSGPHSFQVTLRHRVTGDVKVLGRRAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101479

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences