Metagenome / Metatranscriptome Family F101515

Basic Information
Family ID	F101515
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	77 residues
Representative Sequence	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Number of Associated Samples	93
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.63 %
% of genes near scaffold ends (potentially truncated)	41.18 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (58.824 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.353 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.059 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 44.30% β-sheet: 0.00% Coil/Unstructured: 55.70%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01594	AI-2E_transport	13.73
PF05532	CsbD	11.76
PF13517	FG-GAP_3	2.94
PF13442	Cytochrome_CBB3	1.96
PF13411	MerR_1	0.98
PF13683	rve_3	0.98
PF01773	Nucleos_tra2_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	13.73
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	11.76
COG1972	Nucleoside permease NupC	Nucleotide transport and metabolism [F]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
All Organisms	root	All Organisms	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
cellular organisms	root	All Organisms → cellular organisms	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.27 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.39 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.84 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.96 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.84 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.94 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.96 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.84 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.94 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1.96 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.84 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.94 %
Nocardia transvalensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	1.96 %
Hyphomicrobium sp. NDB2Meth4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. NDB2Meth4	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10000049	All Organisms → cellular organisms → Bacteria	32910	Open in IMG/M
3300002568\|C688J35102_118559484	Not Available	571	Open in IMG/M
3300004081\|Ga0063454_101207446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	626	Open in IMG/M
3300004480\|Ga0062592_101768034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	603	Open in IMG/M
3300005093\|Ga0062594_101486229	Not Available	694	Open in IMG/M
3300005093\|Ga0062594_102920703	Not Available	533	Open in IMG/M
3300005146\|Ga0066817_1010536	Not Available	734	Open in IMG/M
3300005162\|Ga0066814_10058492	Not Available	651	Open in IMG/M
3300005328\|Ga0070676_10171578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1403	Open in IMG/M
3300005329\|Ga0070683_102222777	Not Available	527	Open in IMG/M
3300005334\|Ga0068869_100306011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1285	Open in IMG/M
3300005335\|Ga0070666_10098188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2016	Open in IMG/M
3300005337\|Ga0070682_100714110	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005339\|Ga0070660_101472721	Not Available	579	Open in IMG/M
3300005344\|Ga0070661_100118928	All Organisms → cellular organisms → Bacteria → Proteobacteria	1977	Open in IMG/M
3300005353\|Ga0070669_100134614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1900	Open in IMG/M
3300005366\|Ga0070659_101485258	Not Available	604	Open in IMG/M
3300005455\|Ga0070663_100124766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1949	Open in IMG/M
3300005457\|Ga0070662_100486918	Not Available	1027	Open in IMG/M
3300005544\|Ga0070686_100097341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1980	Open in IMG/M
3300005549\|Ga0070704_100062323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2672	Open in IMG/M
3300005618\|Ga0068864_101613106	Not Available	653	Open in IMG/M
3300005718\|Ga0068866_11383585	Not Available	514	Open in IMG/M
3300006028\|Ga0070717_11643700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia transvalensis	582	Open in IMG/M
3300006038\|Ga0075365_10094769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2038	Open in IMG/M
3300006178\|Ga0075367_10087161	All Organisms → cellular organisms → Bacteria → Proteobacteria	1896	Open in IMG/M
3300006196\|Ga0075422_10579327	Not Available	517	Open in IMG/M
3300006358\|Ga0068871_100052084	All Organisms → cellular organisms → Bacteria → Proteobacteria	3314	Open in IMG/M
3300006605\|Ga0074057_11235034	Not Available	587	Open in IMG/M
3300009094\|Ga0111539_11212801	Not Available	876	Open in IMG/M
3300009177\|Ga0105248_13407366	Not Available	505	Open in IMG/M
3300009553\|Ga0105249_10009924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8348	Open in IMG/M
3300010373\|Ga0134128_10470255	Not Available	1402	Open in IMG/M
3300010397\|Ga0134124_10888190	All Organisms → cellular organisms → Bacteria → Proteobacteria	897	Open in IMG/M
3300010400\|Ga0134122_10207458	Not Available	1629	Open in IMG/M
3300010403\|Ga0134123_10165954	Not Available	1845	Open in IMG/M
3300011119\|Ga0105246_10672674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	904	Open in IMG/M
3300012469\|Ga0150984_120036887	Not Available	849	Open in IMG/M
3300012469\|Ga0150984_120848480	Not Available	540	Open in IMG/M
3300012914\|Ga0157297_10040875	Not Available	1166	Open in IMG/M
3300012955\|Ga0164298_10089209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1604	Open in IMG/M
3300012958\|Ga0164299_10791367	Not Available	675	Open in IMG/M
3300013306\|Ga0163162_12338347	Not Available	614	Open in IMG/M
3300014325\|Ga0163163_12641543	Not Available	559	Open in IMG/M
3300014969\|Ga0157376_11899376	Not Available	632	Open in IMG/M
3300015077\|Ga0173483_10424870	Not Available	689	Open in IMG/M
3300015200\|Ga0173480_10421202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	780	Open in IMG/M
3300015371\|Ga0132258_13425773	Not Available	1088	Open in IMG/M
3300015372\|Ga0132256_100064941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3440	Open in IMG/M
3300015372\|Ga0132256_102026285	Not Available	682	Open in IMG/M
3300015373\|Ga0132257_102377417	Not Available	687	Open in IMG/M
3300017965\|Ga0190266_10025956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1793	Open in IMG/M
3300018027\|Ga0184605_10166359	Not Available	996	Open in IMG/M
3300018028\|Ga0184608_10047931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1674	Open in IMG/M
3300018061\|Ga0184619_10300905	Not Available	735	Open in IMG/M
3300018074\|Ga0184640_10169528	All Organisms → cellular organisms → Bacteria → Proteobacteria	979	Open in IMG/M
3300018429\|Ga0190272_13041604	Not Available	520	Open in IMG/M
3300018469\|Ga0190270_11268161	Not Available	778	Open in IMG/M
3300018476\|Ga0190274_11477518	Not Available	770	Open in IMG/M
3300019356\|Ga0173481_10209428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	851	Open in IMG/M
3300019887\|Ga0193729_1090975	Not Available	1176	Open in IMG/M
3300021344\|Ga0193719_10185264	Not Available	892	Open in IMG/M
3300021510\|Ga0222621_1058217	Not Available	812	Open in IMG/M
3300021510\|Ga0222621_1104165	Not Available	602	Open in IMG/M
3300025900\|Ga0207710_10006042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5189	Open in IMG/M
3300025903\|Ga0207680_10313056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300025923\|Ga0207681_10692312	Not Available	847	Open in IMG/M
3300025926\|Ga0207659_10055051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2843	Open in IMG/M
3300025928\|Ga0207700_10305962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1374	Open in IMG/M
3300025930\|Ga0207701_10189264	Not Available	1812	Open in IMG/M
3300025934\|Ga0207686_10270734	Not Available	1249	Open in IMG/M
3300026116\|Ga0207674_10811088	Not Available	903	Open in IMG/M
3300026118\|Ga0207675_100766062	Not Available	977	Open in IMG/M
3300027181\|Ga0208997_1004914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1663	Open in IMG/M
3300027560\|Ga0207981_1012504	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300027866\|Ga0209813_10214644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	718	Open in IMG/M
3300028379\|Ga0268266_11160196	Not Available	747	Open in IMG/M
3300028710\|Ga0307322_10056453	Not Available	965	Open in IMG/M
3300028712\|Ga0307285_10221757	Not Available	533	Open in IMG/M
3300028715\|Ga0307313_10075881	Not Available	1007	Open in IMG/M
3300028715\|Ga0307313_10298701	Not Available	501	Open in IMG/M
3300028721\|Ga0307315_10172969	Not Available	662	Open in IMG/M
3300028754\|Ga0307297_10172052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	747	Open in IMG/M
3300028754\|Ga0307297_10291443	Not Available	588	Open in IMG/M
3300028755\|Ga0307316_10186931	Not Available	744	Open in IMG/M
3300028768\|Ga0307280_10057151	Not Available	1231	Open in IMG/M
3300028771\|Ga0307320_10165431	Not Available	859	Open in IMG/M
3300028784\|Ga0307282_10329047	Not Available	738	Open in IMG/M
3300028784\|Ga0307282_10344134	Not Available	720	Open in IMG/M
3300028784\|Ga0307282_10537634	Not Available	567	Open in IMG/M
3300028784\|Ga0307282_10635011	Not Available	518	Open in IMG/M
3300028814\|Ga0307302_10031208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2448	Open in IMG/M
3300028819\|Ga0307296_10087204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1667	Open in IMG/M
3300028828\|Ga0307312_10062664	Not Available	2245	Open in IMG/M
3300028876\|Ga0307286_10014180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2503	Open in IMG/M
3300031152\|Ga0307501_10250141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300031200\|Ga0307496_10024078	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300031226\|Ga0307497_10053976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. NDB2Meth4	1421	Open in IMG/M
3300031854\|Ga0310904_10183479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1247	Open in IMG/M
3300031908\|Ga0310900_11624451	Not Available	547	Open in IMG/M
3300032075\|Ga0310890_11445631	Not Available	565	Open in IMG/M
3300032205\|Ga0307472_100195451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.73%
Host-Associated	Host-Associated	36.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.84%
Plants	Host-Associated → Plants	36.27%
Aquatic	Environmental → Aquatic	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.84%
Sediment	Environmental → Aquatic → Sediment	5.88%
Roots	Host-Associated → Plants → Roots	4.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.04%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.69%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	32.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027181	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_1000004924	3300001661	Forest Soil	MRNTIKQLIIGMAVAVGLSAVGVSAIGGAVAQSAVEKAPVVGQDAVIGGYEFPGSETGGRLGDRQQLRGYFLNGARDWQR*
C688J35102_1185594841	3300002568	Soil	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0063454_1012074461	3300004081	Soil	MRSTVRQLITGVAVAVALSALGVGALGGAIAQSPQRTPALPQDGLVSGYNAAPFAVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0062592_1017680341	3300004480	Soil	VAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0062594_1014862291	3300005093	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPLDVGGRLGDRQRLQ
Ga0062594_1029207031	3300005093	Soil	TGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVGGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK*
Ga0066817_10105361	3300005146	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0066814_100584921	3300005162	Soil	MEAIMRSAITQLIFGMAVAIGLSAVGVSAIGGAVAQSAERAPILTQNGVISGYDYAPLEGGGRLGDRQQLKHYFLAGSRDRLR*
Ga0070676_101715783	3300005328	Miscanthus Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLEHYFLDGSRDRLR*
Ga0070683_1022227771	3300005329	Corn Rhizosphere	MRSTIRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALPQDGLVRGYNAAPFAVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0068869_1003060112	3300005334	Miscanthus Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0070666_100981882	3300005335	Switchgrass Rhizosphere	LITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0070682_1007141101	3300005337	Corn Rhizosphere	MPSTVRQLITGVTVALALAAVGVGAIGGAVAQAPQRAPAWAQDDLVSGYNAAPFDAGGRLGDRQQLQHYFLDGSRDRLR*
Ga0070660_1014727211	3300005339	Corn Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPLDVGGRLGDRQRLQHYFLDGPRDRLR*
Ga0070661_1001189284	3300005344	Corn Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVGGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK*
Ga0070669_1001346142	3300005353	Switchgrass Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVGGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK*
Ga0070659_1014852581	3300005366	Corn Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPFDVGGRLGDRQRLQHYFLDGPRDRLR*
Ga0070663_1001247663	3300005455	Corn Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLRHYFLDGSRDRLR*
Ga0070662_1004869182	3300005457	Corn Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVVGRLGDRQQLEHYFLDGS
Ga0070686_1000973412	3300005544	Switchgrass Rhizosphere	VRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0070704_1000623231	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK*
Ga0068864_1016131061	3300005618	Switchgrass Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPFDVGGRLGDRQRLQHYFLDGPRDRLR*
Ga0068866_113835852	3300005718	Miscanthus Rhizosphere	VRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0070717_116437001	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGARDRLR*
Ga0075365_100947692	3300006038	Populus Endosphere	MRSTIRQLIIGMALAIGLSAVGVSAIGGAVAHSAMERVPAMANDGVISGYASAPLDGGGRLGDRQQLRSYFLDGARDRTR*
Ga0075367_100871615	3300006178	Populus Endosphere	MRSTIRQLIIGMALAIGLSAVGVSAIGGAVAHSAMERVPAMANDGVISGYASAPLDGGGRLGDRQQLRSYFLDGARDRTR
Ga0075422_105793271	3300006196	Populus Rhizosphere	MQSTVRPLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0068871_1000520845	3300006358	Miscanthus Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRL
Ga0074057_112350341	3300006605	Soil	MRSAITQLIFGMAVAIGLSAVAVGAIGGAVAQSAERAPTLTHDGVISGYDSGPFEGGGRLGDRQQLKHYFLAGSRDRLR*
Ga0111539_112128012	3300009094	Populus Rhizosphere	WETNMRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0105248_134073661	3300009177	Switchgrass Rhizosphere	MRSTVRLLIIGVAVAVALSAVGVGAIGGAVAQSPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGARDRLR*
Ga0105249_100099241	3300009553	Switchgrass Rhizosphere	AVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGSVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0134128_104702551	3300010373	Terrestrial Soil	MEAIMRSTVRHLTIGMAVAIGLSAVGVSAIGGAVAQSAERAPILTQNGVISGYDYAPLEGGGRLGDRQQLKHYFLAGSRDRLR*
Ga0134124_108881901	3300010397	Terrestrial Soil	VRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGARDRLR*
Ga0134122_102074581	3300010400	Terrestrial Soil	RQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0134123_101659543	3300010403	Terrestrial Soil	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGRRLGDRQQLQHYFLDGSRDRLR*
Ga0105246_106726742	3300011119	Miscanthus Rhizosphere	VAVAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPFDVGGRLGDRQRLQHYFLDGPRDRLR*
Ga0150984_1200368872	3300012469	Avena Fatua Rhizosphere	TNIRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0150984_1208484801	3300012469	Avena Fatua Rhizosphere	ETDMRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0157297_100408754	3300012914	Soil	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQH
Ga0164298_100892092	3300012955	Soil	MEAIMRSTVRHLTIGMAVAIGLSAVGVSAIGGAVAQSAERAPILTQNGVISGYDYAPLEGGGRLGDRQQLKDYFLAGSRDRLR*
Ga0164299_107913672	3300012958	Soil	MEAIMRSTVRHLTIGMAVAIGLSAVGVSAIGGAVAQSAERAPILTQNGVISGYDYAPLEGGG
Ga0163162_123383472	3300013306	Switchgrass Rhizosphere	HDGWETNMRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0163163_126415431	3300014325	Switchgrass Rhizosphere	VRQLITGVAVAVALSAVGVGAIGGAVAQSPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR*
Ga0157376_118993761	3300014969	Miscanthus Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK*
Ga0173483_104248701	3300015077	Soil	MRSAVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK*
Ga0173480_104212021	3300015200	Soil	MRSAVRQLITGVAVAVALAAVGVGAIGGALAQSPRRLPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK*
Ga0132258_134257732	3300015371	Arabidopsis Rhizosphere	MEAIMRSTVRHLTIGMAVAIGLSAVGVSAIGGAVAQSAERAPILTKNGVISGYDYAPLEGGGRLGDRQQLKHYFLAGSRDRLR*
Ga0132256_1000649413	3300015372	Arabidopsis Rhizosphere	IFAMAAAMGLSAIAVGAIGGAVAQSAERAPTLTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR*
Ga0132256_1020262851	3300015372	Arabidopsis Rhizosphere	MEAIMRSTVRHLTIGMAVAIGLSAVGVSAIGGAVAQSAERAPILTQNGVISGYDYAPLEGGGRLGDRQQLKHYFLAGSRD
Ga0132257_1023774171	3300015373	Arabidopsis Rhizosphere	MEAIMRSTVRHLTIGMAVAIGLSAVGVSAICSAVAQSAERAPTLTHDGVISGYDYAPLEGGGRLGDRQQLKHYFLAGS
Ga0190266_100259561	3300017965	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0184605_101663592	3300018027	Groundwater Sediment	MRSTVRQLIIGMAVAIGLSAVGVSAIGGAVAQSAERAPAMSHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0184608_100479313	3300018028	Groundwater Sediment	MRSTVRQLIIGMAVAIGLSAVAVSAIGGAVAQSAERAPAMSHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0184619_103009051	3300018061	Groundwater Sediment	TIRQLIIGMAVAIGLSAVGVSAIGGAVAQSAERAPAMTHDGVISGYDSAPFEGGGRLGDRQPLKHYFLDGSRDRLR
Ga0184640_101695282	3300018074	Groundwater Sediment	LITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0190272_130416041	3300018429	Soil	MRSTIRQLITGVAVAVALSALGVGAIGGAIAQSPQRKPALPQDGLVSGYNAAPFAVGGRLGDRQQLQHYFL
Ga0190270_112681612	3300018469	Soil	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFL
Ga0190274_114775182	3300018476	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLGGSRDRLR
Ga0173481_102094282	3300019356	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVGGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLK
Ga0193729_10909752	3300019887	Soil	MRSTIRQLIIGMAVAIGLSAVGVSAIGGAVAQSAERAPAMTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0193719_101852642	3300021344	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0222621_10582171	3300021510	Groundwater Sediment	MRSTVRQLIIAMAVAIGLSAVGVSAIGGAVAQSAERAPTMSHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0222621_11041652	3300021510	Groundwater Sediment	MRSTVRQLIIGMAVAVGLSAVGVSAIGGAVAQSAERAPAMSHDGVISGYDSAPFEGGGRLGDRQQLKHYF
Ga0207710_100060421	3300025900	Switchgrass Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRHGDRQQLQHYFLDGSRDRLR
Ga0207680_103130562	3300025903	Switchgrass Rhizosphere	LITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0207681_106923121	3300025923	Switchgrass Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0207659_100550512	3300025926	Miscanthus Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAALFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0207700_103059622	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRSAVRQLITGVTVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0207701_101892641	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0207686_102707342	3300025934	Miscanthus Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0207674_108110882	3300026116	Corn Rhizosphere	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLD
Ga0207675_1007660621	3300026118	Switchgrass Rhizosphere	VAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPLDVGGRLGDRQRLQHYFLDGPRDRLR
Ga0208997_10049144	3300027181	Forest Soil	MRNTIKQLIIGMAVAVGLSAVGVSAIGGAVAQSAVEKAPVVGQDAVIGGYEFPGSETGGRLGDRQQLRGYFLNGARDWQR
Ga0207981_10125041	3300027560	Soil	MRSAVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNAAPFDVGGRLGDRQQLQHYFLDG
Ga0209813_102146442	3300027866	Populus Endosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPFDVGGRLGDRQRLQHYFLDGPRDRLR
Ga0268266_111601961	3300028379	Switchgrass Rhizosphere	MRSTVRQLITGVAVAVALSAVGVGAIGGAIAQSPQRMPALADGSVGGYSAAPLDVGGRLGDRQRLQHYFLDGPRDRLR
Ga0307322_100564532	3300028710	Soil	MRSAVRRLIFGMAVAVGFSAVAVSAIGGAVAQSAERAPTLTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLK
Ga0307285_102217571	3300028712	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRVPALAQDGLVSGYNAPPFAVGGRLVDRQQLQHYFLDGSRDRLR
Ga0307313_100758813	3300028715	Soil	MRSTVRQLIIGMAVAIGLSAVGVSAIGGAVAQSAERAPAMSHDGVISGYDSAPFEGGGRLGDRQQLKHYFLD
Ga0307313_102987011	3300028715	Soil	WMEAIMRSTIRQLIIGMAVAIGLSAVGVSAIGGAVAQSAERAPAMTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0307315_101729692	3300028721	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHHFLD
Ga0307297_101720521	3300028754	Soil	RSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRVPALAQDGLVSGYNAPPFAVGGRLVDRQQLQHYFLDGSRDRLR
Ga0307297_102914431	3300028754	Soil	MQSTVRPLITGVAVAVALSAVGVGAIGGAIAQSPQGMPALPQDGLVSGYDAAPFAVGGRLGDRQQLQHYFLDGSRDRLR
Ga0307316_101869312	3300028755	Soil	MRSAVRRLIFGMAVAVGFSAVAVSAIGGAVAQSAVRAPTLTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRD
Ga0307280_100571512	3300028768	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRAPALAQDGLVSGYNAAPVDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0307320_101654312	3300028771	Soil	MRSTVRQLIIAMAVAIGLSAVGVSAIGGAVAQSAERAPAMTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0307282_103290472	3300028784	Soil	MRSTVRQLIIGMAVAIGLSAVGVSAIGGAVAQSAERAPAMTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0307282_103441341	3300028784	Soil	MRSTVRQLIIGMAVAVGLSAVGVSAIGGAVAQSAERAPGMSHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0307282_105376341	3300028784	Soil	MRSAVRRLIFGMAVAVGFSAVAVSAIGGAVAQSAERAPTLTHDGVISGYDSAPFEGG
Ga0307282_106350112	3300028784	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRTPALAQDGLVSGYNAAPVDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0307302_100312081	3300028814	Soil	MRSTIRQLIIGMAVAIGLSAVGVSAIGGAVAQSAERAPAMTHDGVISGYDSAPFEGGGR
Ga0307296_100872042	3300028819	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0307312_100626641	3300028828	Soil	TNMRSTVRQLITGVAVAVALSAVGVGAIGGAVAQSPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0307286_100141802	3300028876	Soil	MRSTVRQLITGVAVPVALSAVGVGAIGGAVAQAPQRAPALAQDGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0307501_102501412	3300031152	Soil	MRSTVRQLIIAMAVAIGLSAVGVSAIGGAVAQSAERAPTMSHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDG
Ga0307496_100240781	3300031200	Soil	MRSAVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDSLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0307497_100539761	3300031226	Soil	MDGGDHAQRSQLIFGMAVAIGFSAVAVSAIGGAVAQSAERAPTLTHDGVISGYDSAPFEGGGRLGDRQQLKHYFLDGSRDRLR
Ga0310904_101834792	3300031854	Soil	TNMRSAVKQLITGVAVAVALSAVGVGAIGGAIAQSPQRTPALAQDGLISGYNSAPFDVGGRLGDRQQLQHYFLDGSRDRLR
Ga0310900_116244511	3300031908	Soil	MRSTVRHLTIGMAVAIGLSAVGVSAIGGAVAQSAERAPILTQNGVISGYDYAPLEGGGRLGDRQQLKHYFLAGSRDRLR
Ga0310890_114456312	3300032075	Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRTPALAQDGLVSGYNAAPFDVGGRLGDRQQLEHYFLD
Ga0307472_1001954512	3300032205	Hardwood Forest Soil	MRSTVRQLITGVAVAVALSAVGVGAIGGAVAQAPQRAPALAQDGGLVSGYNAAPFDVGGRLGDRQQLQHYFLDGSRDRLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101515

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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