NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101551

Metagenome Family F101551

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101551
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 38 residues
Representative Sequence MMRYLLRRLGHAFFLLVGVSILAFLFTALAPGNYFDEMRLN
Number of Associated Samples 84
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.47 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 83.33 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.059 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(40.196 % of family members)
Environment Ontology (ENVO) Unclassified
(35.294 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.118 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 50.72%    β-sheet: 0.00%    Coil/Unstructured: 49.28%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF00005ABC_tran 76.47
PF08352oligo_HPY 16.67
PF14361RsbRD_N 0.98
PF00117GATase 0.98
PF13432TPR_16 0.98
PF05199GMC_oxred_C 0.98
PF13304AAA_21 0.98
PF13619KTSC 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 0.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.06 %
UnclassifiedrootN/A2.94 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10435401All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300001867|JGI12627J18819_10438087All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300005468|Ga0070707_101784731All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300005554|Ga0066661_10579643All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300005556|Ga0066707_10701396All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300005576|Ga0066708_10123904All Organisms → cellular organisms → Bacteria1561Open in IMG/M
3300005591|Ga0070761_10389474All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300005712|Ga0070764_10403674All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300006031|Ga0066651_10102914All Organisms → cellular organisms → Bacteria1440Open in IMG/M
3300006046|Ga0066652_100040563All Organisms → cellular organisms → Bacteria3428Open in IMG/M
3300006176|Ga0070765_101054599All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300006755|Ga0079222_10323361All Organisms → cellular organisms → Bacteria1023Open in IMG/M
3300006903|Ga0075426_10237798All Organisms → cellular organisms → Bacteria1325Open in IMG/M
3300007265|Ga0099794_10152495All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1173Open in IMG/M
3300007265|Ga0099794_10345467All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300009012|Ga0066710_101970238All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300009038|Ga0099829_11431458All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300009088|Ga0099830_11219121All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300009090|Ga0099827_10169711All Organisms → cellular organisms → Bacteria1797Open in IMG/M
3300010159|Ga0099796_10231560All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300010321|Ga0134067_10002575All Organisms → cellular organisms → Bacteria4493Open in IMG/M
3300010337|Ga0134062_10079519All Organisms → cellular organisms → Bacteria → Acidobacteria1379Open in IMG/M
3300011269|Ga0137392_10415579All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300011269|Ga0137392_10880386All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300011270|Ga0137391_10100421All Organisms → cellular organisms → Bacteria → Acidobacteria2506Open in IMG/M
3300011270|Ga0137391_11388793All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300011270|Ga0137391_11401294All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300011271|Ga0137393_10110155All Organisms → cellular organisms → Bacteria2259Open in IMG/M
3300011271|Ga0137393_10371210All Organisms → cellular organisms → Bacteria1223Open in IMG/M
3300012096|Ga0137389_10096447All Organisms → cellular organisms → Bacteria2341Open in IMG/M
3300012096|Ga0137389_10168302All Organisms → cellular organisms → Bacteria → Proteobacteria1807Open in IMG/M
3300012096|Ga0137389_10322024All Organisms → cellular organisms → Bacteria1311Open in IMG/M
3300012189|Ga0137388_10348938All Organisms → cellular organisms → Bacteria → Acidobacteria1364Open in IMG/M
3300012200|Ga0137382_10617152All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300012202|Ga0137363_10562116All Organisms → cellular organisms → Bacteria961Open in IMG/M
3300012203|Ga0137399_11788281All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300012206|Ga0137380_10374602All Organisms → cellular organisms → Bacteria → Acidobacteria1267Open in IMG/M
3300012208|Ga0137376_11009699All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300012362|Ga0137361_10034532All Organisms → cellular organisms → Bacteria4044Open in IMG/M
3300012362|Ga0137361_10577991All Organisms → cellular organisms → Bacteria1030Open in IMG/M
3300012582|Ga0137358_10183380All Organisms → cellular organisms → Bacteria1428Open in IMG/M
3300012582|Ga0137358_10459160All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300012683|Ga0137398_10105279All Organisms → cellular organisms → Bacteria1780Open in IMG/M
3300012918|Ga0137396_10528052All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300012918|Ga0137396_11137325All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300012929|Ga0137404_10108338All Organisms → cellular organisms → Bacteria2252Open in IMG/M
3300012929|Ga0137404_12039987All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300012930|Ga0137407_10180600All Organisms → cellular organisms → Bacteria1883Open in IMG/M
3300014157|Ga0134078_10001199All Organisms → cellular organisms → Bacteria6328Open in IMG/M
3300015241|Ga0137418_10048383All Organisms → cellular organisms → Bacteria3908Open in IMG/M
3300018431|Ga0066655_10341841All Organisms → cellular organisms → Bacteria981Open in IMG/M
3300018468|Ga0066662_11416203Not Available720Open in IMG/M
3300020579|Ga0210407_10167018All Organisms → cellular organisms → Bacteria → Proteobacteria1701Open in IMG/M
3300020581|Ga0210399_10137723All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2013Open in IMG/M
3300021046|Ga0215015_10482693All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300021170|Ga0210400_10112052All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2170Open in IMG/M
3300021403|Ga0210397_10042530All Organisms → cellular organisms → Bacteria2884Open in IMG/M
3300021559|Ga0210409_10930164All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300021559|Ga0210409_11103875All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300024246|Ga0247680_1000861All Organisms → cellular organisms → Bacteria6994Open in IMG/M
3300024330|Ga0137417_1079549All Organisms → cellular organisms → Bacteria → Acidobacteria1609Open in IMG/M
3300026296|Ga0209235_1111914All Organisms → cellular organisms → Bacteria1160Open in IMG/M
3300026304|Ga0209240_1228832All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300026331|Ga0209267_1026870All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2804Open in IMG/M
3300026482|Ga0257172_1098874Not Available536Open in IMG/M
3300026496|Ga0257157_1008432All Organisms → cellular organisms → Bacteria → Proteobacteria1615Open in IMG/M
3300026497|Ga0257164_1032781All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300026507|Ga0257165_1102788All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300026547|Ga0209156_10066369All Organisms → cellular organisms → Bacteria → Proteobacteria1861Open in IMG/M
3300026551|Ga0209648_10011650All Organisms → cellular organisms → Bacteria → Acidobacteria7649Open in IMG/M
3300026557|Ga0179587_10662580All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300027076|Ga0208860_1017951Not Available699Open in IMG/M
3300027591|Ga0209733_1099832All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300027643|Ga0209076_1108965All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300027663|Ga0208990_1039229All Organisms → cellular organisms → Bacteria → Acidobacteria1467Open in IMG/M
3300027671|Ga0209588_1161025All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300027671|Ga0209588_1226824All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300027674|Ga0209118_1218180All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300027737|Ga0209038_10162703All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300027768|Ga0209772_10186901All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300027875|Ga0209283_10086066All Organisms → cellular organisms → Bacteria2043Open in IMG/M
3300027882|Ga0209590_10104879All Organisms → cellular organisms → Bacteria1695Open in IMG/M
3300027903|Ga0209488_10833137All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300028047|Ga0209526_10141719All Organisms → cellular organisms → Bacteria → Acidobacteria1685Open in IMG/M
3300028146|Ga0247682_1037652All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300028906|Ga0308309_10027419All Organisms → cellular organisms → Bacteria3855Open in IMG/M
3300030606|Ga0299906_10420172All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300031718|Ga0307474_10997787All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300031718|Ga0307474_11452440All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300031720|Ga0307469_10293001All Organisms → cellular organisms → Bacteria → Acidobacteria1336Open in IMG/M
3300031753|Ga0307477_10565614All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300031754|Ga0307475_10257732All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1398Open in IMG/M
3300031754|Ga0307475_10385817All Organisms → cellular organisms → Bacteria1125Open in IMG/M
3300031754|Ga0307475_11169616All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300031823|Ga0307478_10913451All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300031962|Ga0307479_11194447All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300031962|Ga0307479_11551011All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300032174|Ga0307470_10529031All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300032180|Ga0307471_101673555All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300032180|Ga0307471_102935353All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300032205|Ga0307472_100783888All Organisms → cellular organisms → Bacteria868Open in IMG/M
3300032515|Ga0348332_10523871All Organisms → cellular organisms → Bacteria928Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil40.20%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil13.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.86%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.86%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.88%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.94%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.98%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024246Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026496Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-AEnvironmentalOpen in IMG/M
3300026497Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-BEnvironmentalOpen in IMG/M
3300026507Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-BEnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027076Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)EnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027663Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028146Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030606Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1043540113300001593Forest SoilMMRYFLRRLAHACFLLVGVSILTFLFSALAPGNYFDEMRL
JGI12627J18819_1043808723300001867Forest SoilMRYLFARLIQTVFLLLGVSFLTFLFSSLAPGNYFDEMR
Ga0070707_10178473113300005468Corn, Switchgrass And Miscanthus RhizosphereMRYLVLRVFHAVLLLMAASVLTFLFTALAPGNYFDETRLNPQISA
Ga0066661_1057964313300005554SoilMRYLLRRLGHALFLLAGVSILAFLFTALAPGNYFDEMRLNPQ
Ga0066707_1070139613300005556SoilMRYLLRRLGHALLLLAGVSVLTFLFTALAPGTYFDE
Ga0066708_1012390433300005576SoilMRYLVRRLGHAFFLLAGASVLAFLFTALAPGTYFDEMRL
Ga0070761_1038947413300005591SoilMRYFLRRALHAFFLLLGVSLLTFLFSALTPGNYFDEMRLN
Ga0070764_1040367413300005712SoilMRYFLGRTLHAVFLLFGVSLLTFLFSALTPGNYFDEMRLN
Ga0066651_1010291413300006031SoilMRYLVRRLGHAFFLLAGASVLAFLFTALAPGTYFDEMR
Ga0066652_10004056313300006046SoilMRYLLRRSAHAAFLLLGVSLLAFAFTVLAPGSYFDEMRLNPQIAP
Ga0070765_10105459923300006176SoilMRYLLRRTLHAVFLLLGVSLLTFLFSSLTPGNYFD
Ga0079222_1032336113300006755Agricultural SoilMLYFLRRFGHAVFLLIGVSILAFVFTVLAPGNYFDEM
Ga0075426_1023779813300006903Populus RhizosphereMHYLLRRIGHAGFLLAGVSVLAFLFTVLAPGNYFDEMRLN
Ga0099794_1015249533300007265Vadose Zone SoilMTGFLLRRLRHALFLLIGASILAFLFAALAPGNYF
Ga0099794_1034546713300007265Vadose Zone SoilMMRYLLRRMGHALFLLAGVSILAFLFTALAPGNYFDE
Ga0066710_10197023813300009012Grasslands SoilMRFFFRRLRHACFLLFGVSILAFLFTTLAPGNYFDEM
Ga0099829_1143145813300009038Vadose Zone SoilMIRYFLRRLAHAFLLVIGVSILAFFFTTLAPGNYFDEMRLNPQ
Ga0099830_1121912113300009088Vadose Zone SoilMMRYLLRRIAHAFFLLIGVSILAFLFATLAPGNYFDEM
Ga0099827_1016971113300009090Vadose Zone SoilMMPYLLRRLGHALFLLAGVSILAFFFTALAPGTYFDEM
Ga0099796_1023156023300010159Vadose Zone SoilMTRFLLRRAGHAVFLLFGVSVLAFVFSTLAPGNYFDEMRLNP
Ga0134067_1000257513300010321Grasslands SoilMMRYLLRRLSHALFLLAGVSILAFLFAALAPGTYF
Ga0134062_1007951933300010337Grasslands SoilMMRYLLRRLGHAFFLLVGVSILAFLFTALAPGNYFDEMRLN
Ga0137392_1041557913300011269Vadose Zone SoilMRYLLQRFLHAALLLAGASVLAFLFTSLAPGNYFD
Ga0137392_1088038623300011269Vadose Zone SoilMRYLLRRFLHAALLLAGASVLAFLFTSLAPGNYFDEMRLNP
Ga0137391_1010042153300011270Vadose Zone SoilMRYLLRRLGHALFLLAGVSMLAFLFTSLAPGTYFDEMRLNPQ
Ga0137391_1138879323300011270Vadose Zone SoilMMPYLLRRMGHALFLLAGVSILAFLFAALAPGNYFDEMRLNP
Ga0137391_1140129423300011270Vadose Zone SoilMRYFLRRLMQAALLLISVSILTFLFSTFAPGNYFDEMRLNPQ
Ga0137393_1011015533300011271Vadose Zone SoilMRYLLRRFGHAVFLLVGVSLLAFMFTTLAPGNYFDEMRL
Ga0137393_1037121033300011271Vadose Zone SoilMRYFLRRLMHAAFLLIGVSILTFLFSTLAPGSYFDEMRL
Ga0137389_1009644713300012096Vadose Zone SoilVSGASAITRFLLRRLAHAAFLLFGVSVLAFFFSTFAPGNY
Ga0137389_1016830213300012096Vadose Zone SoilMRYLLRRMLHAVFLLFGVSILTFLFSTLAPGNYFDEMR
Ga0137389_1032202433300012096Vadose Zone SoilMIRYILRRLGHSFFLLAGVSILAFLFTALAPGNYF
Ga0137388_1034893833300012189Vadose Zone SoilMRYFLRRLMHAAFLLIGVSILTFLFSTLAPGSYFDEMRLNPQI
Ga0137382_1061715223300012200Vadose Zone SoilMMRYLLRRLGHAFFLLVGVSILAFLFTALAPGNYFDEMRLNP
Ga0137363_1056211613300012202Vadose Zone SoilMLIGFLLRRLRHALFLLVGVSVLAFLFAALAPGNYFDEMRLN
Ga0137399_1178828113300012203Vadose Zone SoilMIRYFLRRLAHAFLLVIGVSILAFFFTTLAPGNYFDEM
Ga0137380_1037460213300012206Vadose Zone SoilMPYFLRRFVHAVFLLIGVSVLAFGFMVLAPGNYFDEM
Ga0137376_1100969923300012208Vadose Zone SoilMMRYLLRRLGHAFFLLVGVSILAFLFTALAPGNYF
Ga0137361_1003453213300012362Vadose Zone SoilMTRFLLRRLAHGAFLLLGVSVLAFLFSTLAPGNYFD
Ga0137361_1057799133300012362Vadose Zone SoilMRYLARRIVHAVFLLFGVSILAFLFSTLAPGNYFD
Ga0137358_1018338033300012582Vadose Zone SoilMTRFLLRRAGHAVFLLFGVSVLAFVFSTLAPGSYFDEMRL
Ga0137358_1045916013300012582Vadose Zone SoilMSYLLRRLLQGVLLLIGASFLTFLFSTLAPGNYLDE
Ga0137398_1010527913300012683Vadose Zone SoilMRYFLQRFLQAAFLLVGVSLLTFLFSALAPGNYFDEMRL
Ga0137396_1052805223300012918Vadose Zone SoilMRYFLRRLLQAAFLLIGVSILTFLFSALAPGNYFDEMRL
Ga0137396_1113732523300012918Vadose Zone SoilMRYFLRRLMQGVFLLIGVSILTFLFSTLAPGNYFDEMRL
Ga0137404_1010833813300012929Vadose Zone SoilMIRYFLRRLGHSFLLIIGVSILAFFFTTLAPGNYFDEMR
Ga0137404_1203998713300012929Vadose Zone SoilMRYLLRRLAHALLLIFGVSLLAFLFTTLAPGNYFDEMR
Ga0137407_1018060033300012930Vadose Zone SoilMRFFLRRLRHACFLLLGVSILAFLFTTLAPGNYFDEMRLNPQI
Ga0134078_1000119973300014157Grasslands SoilMMRYLVRRLGHAFFLLAGASVLAFLFTALAPGTYFDEMRLNPQIA
Ga0137418_1004838313300015241Vadose Zone SoilMMRFFLRRLRHAFFLLVGVSILAFLFTSLAPGNYFDEMRLN
Ga0066655_1034184123300018431Grasslands SoilMRYLLRRFGHAVFLLVGVSLLAFTFTTLAPGNYFDEMR
Ga0066662_1141620323300018468Grasslands SoilMRYLGRRFLHAVLLLAGVSMVTFLFTSLAPGNYFDEMRL
Ga0210407_1016701833300020579SoilMRFLLRRLTHAFLLLVGVSILAFLFTALAPGNYFDE
Ga0210399_1013772313300020581SoilMRYLVRRAAHAALLLASVSVLTFLFTALAPGSYFDDMRLNPQIA
Ga0215015_1048269323300021046SoilMMRYLLRRLAHAFLHVIGVSILAFLFTTLAPGNYFDEM
Ga0210400_1011205213300021170SoilMRYFLRRLTHAVFLLIGVSILTFFFSALAPGNYFD
Ga0210397_1004253053300021403SoilMRYLLRRTLHAVFLLFGVSLLTFLFSALTPGNYFDEMRL
Ga0210409_1093016413300021559SoilMRFILRRLAHAAFLIFGASILTFLFASLAPGDYFDEMRL
Ga0210409_1110387523300021559SoilVNYVLRRSGHAVLLLIGVSFLSFLFSSLAPGNYFDEMR
Ga0247680_100086153300024246SoilMRYLLRRLLHAFLLVIGVSILAFLFTTLAPGNYFDEMRL
Ga0137417_107954933300024330Vadose Zone SoilMTRFLLRRLAHGAFLLLGVSVLAFLFSTLAPGNYF
Ga0209235_111191433300026296Grasslands SoilMRYLVRRLGHAFFLLAGASVLAFLFTALAPGTYFDEMRLN
Ga0209240_122883213300026304Grasslands SoilMIGFLLRRLRHALFLLIGVSVLAFLFAALAPGNYFDEMRLN
Ga0209267_102687013300026331SoilMRYLVRRLGHAFFLLAGASVLAFLFTALAPGTYFDEMRLNPQIA
Ga0257172_109887413300026482SoilMTRFLWRRAGHAVFLLFGVSVLAFVFSTLAPGSYFD
Ga0257157_100843233300026496SoilMRYFLHRLMQAAFLLIGVSILTFLFSTLAPGNYFVD
Ga0257164_103278113300026497SoilMRYLARRFLHAVLLLAGATVVTFLFTALAPGNYFDE
Ga0257165_110278823300026507SoilVNYVLRRFVHAILLLIGVSFLSFLFSSLAPGNYFDEMRL
Ga0209156_1006636933300026547SoilMRYLLRRLSHALFLLAGVSILAFLFAALAPGTYFD
Ga0209648_1001165013300026551Grasslands SoilMRYILRRLGHAFFLLAGVSILAFLFTALAPGNYFDEMRLNP
Ga0179587_1066258013300026557Vadose Zone SoilMTRFLLRRAGHAVFLLFGVSILAFVFSALAPGNDFDEMRLNP
Ga0208860_101795123300027076Forest SoilMRYFLRRLMQAAFLLVGVSILTFLFSALAPGNYFDDMRLN
Ga0209733_109983213300027591Forest SoilMMRYLLRRLGHAVFLLAGVSILAFLFTALAPGDYFDEM
Ga0209076_110896513300027643Vadose Zone SoilMRFFFRRLRHACFLLFGVSILAFLFTTLAPGNYFDEMRLN
Ga0208990_103922933300027663Forest SoilMIRYFLRRLAHAFLLVIGVSILAFFFTTLAPGNYFDEMR
Ga0209588_116102523300027671Vadose Zone SoilMRFLLRRLGHAAFLLVGVSVLAFFFSTLAPGNYFDEMRL
Ga0209588_122682413300027671Vadose Zone SoilMRFFLRRLGHAFLLLVGVSILAFLFTTLAPGNYFDEMRLN
Ga0209118_121818013300027674Forest SoilMRYFLRRLAHACFLLVGVSILTFLFTALAPGNYFDEMRLN
Ga0209038_1016270313300027737Bog Forest SoilMRYLLRRTLHAVFLLFGVSLLTFLFSALTPGNYFDEM
Ga0209772_1018690123300027768Bog Forest SoilMSFLLRRLLQAVFLLIGVSILTFLFSTLAPGNYLDEM
Ga0209283_1008606633300027875Vadose Zone SoilMSYLLHRLLQAAFLLVGVSILTFLFSALAPGNYFD
Ga0209590_1010487933300027882Vadose Zone SoilMPYLLRRLGHALFLLAGVSILAFFFTALAPGTYFDEM
Ga0209488_1083313723300027903Vadose Zone SoilMTGFLLRRVGHAVFLLLGVSVLAFFFSALAPGNYFDEM
Ga0209526_1014171933300028047Forest SoilMRFFLRRLRHALFLLAGVSILAFLFTTLAPGNYFDEMR
Ga0247682_103765223300028146SoilMRYLFRRLLHAFLLVIGVSILAFLFTTLAPGNYFDEM
Ga0308309_1002741963300028906SoilMRYLLRRTLHAVFLLLGVSLLTFLFSSLTPGNYFDE
Ga0299906_1042017233300030606SoilLSGRYLLGRLGHALLVLFGVSLLAFLFVELAPGDYFLE
Ga0307474_1099778713300031718Hardwood Forest SoilMRYFLKRLSHAIFLLLGVSILSFIFTSLAPGNYFD
Ga0307474_1145244023300031718Hardwood Forest SoilMRFMLCRLAHAAFLMFGASILTFLFASLAPGDYFDEMRLNTQIAPETI
Ga0307469_1029300113300031720Hardwood Forest SoilMRFMLRRLAHAVFLMFGASILTFLFASLAPGDYFDEMRLNPQ
Ga0307477_1056561413300031753Hardwood Forest SoilMRYFLRRLMEAAFLLIGVSILTFLFSTLAPGNYFDEMRLN
Ga0307475_1025773233300031754Hardwood Forest SoilMNYLLRRLSHGVLLLIGVSFLTFLFSTLAPGNYLDEM
Ga0307475_1038581713300031754Hardwood Forest SoilMRFLLRRFGHALFLLAGVSVLAFLFTSLAPGTYFD
Ga0307475_1116961623300031754Hardwood Forest SoilMGFILRRLAHAAFLMLGASILTYLFASLAPGDYFDEMR
Ga0307478_1091345113300031823Hardwood Forest SoilMTRFLLRRAGHAVFLLLGVSVLAFLFSTLAPGNYFDEMRLNP
Ga0307479_1119444713300031962Hardwood Forest SoilMRYLLRRLGHGLFLLAGVSILAFLFTTLAPGTYFDE
Ga0307479_1155101113300031962Hardwood Forest SoilVSGARVMTRFLLRRLAHAAFLLFGVSVLAFLFSTFAPGNYFDDMRLDP
Ga0307470_1052903123300032174Hardwood Forest SoilMIRYFLRRLAHAFLLVIGVSILAFFFTTLAPGNYFDEMRLN
Ga0307471_10167355513300032180Hardwood Forest SoilMNYLLRRLTHGALLLIGVSFLTFLFSTLAPGNYLD
Ga0307471_10293535313300032180Hardwood Forest SoilMRYLSRRLLQAAFLLFGVSLLTFLFSTLAPGNYLDEMRL
Ga0307472_10078388813300032205Hardwood Forest SoilMRYLLRRLLQASFLLFGVSLLTFLFSTLAPGNYLDEM
Ga0348332_1052387113300032515Plant LitterMRYFLRRALHAVFLLFGVSLLTFLFSALTPGNYFDEMRLNP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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