Metagenome / Metatranscriptome Family F101585

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101585
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	38 residues
Representative Sequence	MENALGEASLPSKAEEVLRKFFNEMSTFMINQSEPGIS
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	23.53 %
% of genes near scaffold ends (potentially truncated)	57.84 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (63.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (14.706 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.804 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.82% β-sheet: 0.00% Coil/Unstructured: 68.18%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00296	Bac_luciferase	22.55
PF01152	Bac_globin	6.86
PF00440	TetR_N	3.92
PF13561	adh_short_C2	2.94
PF00230	MIP	2.94
PF03466	LysR_substrate	2.94
PF00106	adh_short	1.96
PF05598	DUF772	1.96
PF04454	Linocin_M18	1.96
PF02518	HATPase_c	1.96
PF07730	HisKA_3	1.96
PF00857	Isochorismatase	1.96
PF08447	PAS_3	1.96
PF00578	AhpC-TSA	0.98
PF07681	DoxX	0.98
PF00535	Glycos_transf_2	0.98
PF01609	DDE_Tnp_1	0.98
PF05199	GMC_oxred_C	0.98
PF04956	TrbC	0.98
PF00589	Phage_integrase	0.98
PF00593	TonB_dep_Rec	0.98
PF02321	OEP	0.98
PF13649	Methyltransf_25	0.98
PF08241	Methyltransf_11	0.98
PF08240	ADH_N	0.98
PF09970	DUF2204	0.98
PF00561	Abhydrolase_1	0.98
PF09678	Caa3_CtaG	0.98
PF00196	GerE	0.98
PF02616	SMC_ScpA	0.98
PF14014	DUF4230	0.98
PF12680	SnoaL_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	22.55
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	6.86
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	2.94
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.96
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.96
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.96
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.96
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.96
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.96
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.96
COG1354	Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family	Replication, recombination and repair [L]	0.98
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.98
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.98
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.98
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.98
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.98
COG3838	Type IV secretory pathway, VirB2 component (pilin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.98
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.98
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.98
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.98
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	17.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	13.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.98 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.98 %
Boseaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	0.98 %
Povalibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter	0.98 %
Bosea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.98 %
unclassified Bosea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea	0.98 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.98 %
Povalibacter uvarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum	0.98 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Bosea sp. BK604	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. BK604	0.98 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.98 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.98 %
Povalibacter uvarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum	0.98 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001151\|JGI12713J13577_1008825	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300001593\|JGI12635J15846_10505158	Not Available	713	Open in IMG/M
3300001593\|JGI12635J15846_10715689	Not Available	576	Open in IMG/M
3300001686\|C688J18823_10011066	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5917	Open in IMG/M
3300002245\|JGIcombinedJ26739_100004873	All Organisms → cellular organisms → Bacteria	10171	Open in IMG/M
3300002245\|JGIcombinedJ26739_100697221	Not Available	894	Open in IMG/M
3300004081\|Ga0063454_100860594	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300005541\|Ga0070733_10419565	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300005542\|Ga0070732_10970711	Not Available	519	Open in IMG/M
3300005602\|Ga0070762_10977913	Not Available	579	Open in IMG/M
3300005602\|Ga0070762_11100051	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300005712\|Ga0070764_10444108	Not Available	773	Open in IMG/M
3300005921\|Ga0070766_10667997	Not Available	702	Open in IMG/M
3300006176\|Ga0070765_100063503	All Organisms → cellular organisms → Bacteria	3068	Open in IMG/M
3300006176\|Ga0070765_100326842	All Organisms → cellular organisms → Bacteria	1422	Open in IMG/M
3300006804\|Ga0079221_10356721	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300007258\|Ga0099793_10072072	Not Available	1563	Open in IMG/M
3300009522\|Ga0116218_1148532	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300009623\|Ga0116133_1005607	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	3166	Open in IMG/M
3300009638\|Ga0116113_1198318	Not Available	518	Open in IMG/M
3300009764\|Ga0116134_1036016	All Organisms → cellular organisms → Bacteria → Proteobacteria	1940	Open in IMG/M
3300010880\|Ga0126350_12129682	Not Available	527	Open in IMG/M
3300012206\|Ga0137380_10669473	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300012211\|Ga0137377_10485627	Not Available	1174	Open in IMG/M
3300012363\|Ga0137390_10318340	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300012683\|Ga0137398_10992900	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300012923\|Ga0137359_10615606	Not Available	951	Open in IMG/M
3300014489\|Ga0182018_10276952	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300014489\|Ga0182018_10438435	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300014657\|Ga0181522_10960445	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300015242\|Ga0137412_10600526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum	833	Open in IMG/M
3300015245\|Ga0137409_11127967	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300017946\|Ga0187879_10022560	All Organisms → cellular organisms → Bacteria	3875	Open in IMG/M
3300018017\|Ga0187872_10165056	Not Available	1048	Open in IMG/M
3300018022\|Ga0187864_10260798	Not Available	790	Open in IMG/M
3300018034\|Ga0187863_10055639	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2254	Open in IMG/M
3300018034\|Ga0187863_10067577	All Organisms → cellular organisms → Bacteria	2021	Open in IMG/M
3300018034\|Ga0187863_10429262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	738	Open in IMG/M
3300018043\|Ga0187887_10304825	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300018043\|Ga0187887_10866769	Not Available	534	Open in IMG/M
3300018046\|Ga0187851_10000243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	56105	Open in IMG/M
3300018046\|Ga0187851_10386689	Not Available	802	Open in IMG/M
3300018047\|Ga0187859_10576325	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300019240\|Ga0181510_1252110	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300020021\|Ga0193726_1008539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5699	Open in IMG/M
3300020021\|Ga0193726_1208470	Not Available	818	Open in IMG/M
3300020581\|Ga0210399_10583828	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300020582\|Ga0210395_10000055	All Organisms → cellular organisms → Bacteria	106197	Open in IMG/M
3300020582\|Ga0210395_10266333	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300020583\|Ga0210401_10895201	Not Available	747	Open in IMG/M
3300021088\|Ga0210404_10512547	Not Available	678	Open in IMG/M
3300021170\|Ga0210400_10040400	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	3620	Open in IMG/M
3300021180\|Ga0210396_10780812	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300021401\|Ga0210393_10097952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2332	Open in IMG/M
3300021401\|Ga0210393_10146335	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300021420\|Ga0210394_10527442	Not Available	1039	Open in IMG/M
3300021477\|Ga0210398_11301934	Not Available	571	Open in IMG/M
3300024227\|Ga0228598_1011282	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300025501\|Ga0208563_1051670	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300025905\|Ga0207685_10264964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300025915\|Ga0207693_11335801	Not Available	535	Open in IMG/M
3300025939\|Ga0207665_10015886	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4942	Open in IMG/M
3300026317\|Ga0209154_1326480	Not Available	503	Open in IMG/M
3300026331\|Ga0209267_1230278	Not Available	675	Open in IMG/M
3300026340\|Ga0257162_1020239	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300027064\|Ga0208724_1035627	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300027070\|Ga0208365_1005828	Not Available	1485	Open in IMG/M
3300027080\|Ga0208237_1026755	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300027168\|Ga0208239_1013940	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300027545\|Ga0209008_1006139	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2848	Open in IMG/M
3300027565\|Ga0209219_1102995	Not Available	702	Open in IMG/M
3300027590\|Ga0209116_1002760	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3976	Open in IMG/M
3300027609\|Ga0209221_1124813	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300027619\|Ga0209330_1119512	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027629\|Ga0209422_1021089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1619	Open in IMG/M
3300027737\|Ga0209038_10115811	Not Available	811	Open in IMG/M
3300027745\|Ga0209908_10185735	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300027745\|Ga0209908_10199157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300027829\|Ga0209773_10397410	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300027867\|Ga0209167_10302040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → unclassified Bosea → Bosea sp. BK604	866	Open in IMG/M
3300027889\|Ga0209380_10384726	Not Available	823	Open in IMG/M
3300027905\|Ga0209415_10512655	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300028036\|Ga0265355_1014495	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300028746\|Ga0302233_10145723	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300028776\|Ga0302303_10048404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1667	Open in IMG/M
3300028806\|Ga0302221_10267990	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300029882\|Ga0311368_10669508	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	721	Open in IMG/M
3300029914\|Ga0311359_11166930	Not Available	507	Open in IMG/M
3300029943\|Ga0311340_10771902	Not Available	814	Open in IMG/M
3300029943\|Ga0311340_11533621	Not Available	520	Open in IMG/M
3300030760\|Ga0265762_1003987	All Organisms → cellular organisms → Bacteria	2646	Open in IMG/M
3300031232\|Ga0302323_103404957	Not Available	506	Open in IMG/M
3300031525\|Ga0302326_10398523	All Organisms → cellular organisms → Bacteria	2136	Open in IMG/M
3300031708\|Ga0310686_116250626	Not Available	677	Open in IMG/M
3300031708\|Ga0310686_116573551	Not Available	556	Open in IMG/M
3300031788\|Ga0302319_11242697	Not Available	684	Open in IMG/M
3300031823\|Ga0307478_11277389	Not Available	610	Open in IMG/M
3300032160\|Ga0311301_11789207	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300032174\|Ga0307470_10003379	All Organisms → cellular organisms → Bacteria	6104	Open in IMG/M
3300032174\|Ga0307470_10305665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1081	Open in IMG/M
3300033823\|Ga0334837_122625	Not Available	517	Open in IMG/M
3300033829\|Ga0334854_118826	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.41%
Aquatic	Environmental → Aquatic	18.63%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.65%
Freshwater	Environmental → Aquatic → Freshwater	18.63%
Peat	Environmental → Terrestrial → Peat	11.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.25%
Loam	Environmental → Terrestrial → Soil → Loam	26.47%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	1.96%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027168	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033823	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12713J13577_10088252	3300001151	Forest Soil	MENALGEASLPSKAEEVLRKFFNDLSTFMINQSESGIS*
JGI12635J15846_105051581	3300001593	Forest Soil	ALGEASLPSKAEEVLREFFNEMSTFMINQSESGIS*
JGI12635J15846_107156892	3300001593	Forest Soil	MENALGEASLPSKAEEVLRKFFNEMSTFMINQSEASIS*
C688J18823_100110664	3300001686	Soil	MENALGEGSLPSSAEEVLRKFFNEMSTFMINQSEPGIS*
JGIcombinedJ26739_1000048732	3300002245	Forest Soil	MNNAFGEAALPAEAEQVLRKFFDGMSSFMINQAEPGVR*
JGIcombinedJ26739_1006972211	3300002245	Forest Soil	MXAFGEAALPKEAEQVLRKFLDRMSTFMINQSESGIS*
Ga0063454_1008605941	3300004081	Soil	MRLMENALGEGSLPSSAEEVLRKFFNEMSTFMINQSEPGIS*
Ga0070733_104195651	3300005541	Surface Soil	MRLMENALGEASLPSKAEEVLRKFFNEMSTFMINQSE
Ga0070732_109707111	3300005542	Surface Soil	LGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS*
Ga0070762_109779132	3300005602	Soil	AFGEAALPKEAEQVLRKFLDRMSTFMINQSESGIS*
Ga0070762_111000512	3300005602	Soil	MRDHWMRLMDNALGEASLPSRAEEVLRKFFDEMSAFMINQSEARIS*
Ga0070764_104441081	3300005712	Soil	MRAFGEAAPPKEAEQVLLTFLDRMSTFMINQSESGII*
Ga0070766_106679972	3300005921	Soil	MRAFGEAALPKETEQVLLKFLDQMSTFMINQSESGIS*
Ga0070765_1000635031	3300006176	Soil	DRWMRLMNSAFGEAALPAEAEQVLRKFLDGMSSFMINHLEA*
Ga0070765_1003268422	3300006176	Soil	MNSAFGEAALPEKAEQVLRKFLDEMSTFMINQPEP*
Ga0079221_103567212	3300006804	Agricultural Soil	MRLMENALEEASLPSKAEEVLRKFFNEMSTFMINQSESGMS*
Ga0099793_100720722	3300007258	Vadose Zone Soil	ENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS*
Ga0116218_11485322	3300009522	Peatlands Soil	MNSAFGEAALPEEAEQVLRKFLDEMSTFMINQPEPGMR*
Ga0116133_10056072	3300009623	Peatland	MRLMDNALGEASLPSKAEEVLRKFFNEMSTFMINQSEPRIS*
Ga0116113_11983182	3300009638	Peatland	RLMENALREASLPSKAEEVLRKFFNEMSTFMINQSESGIS*
Ga0116134_10360163	3300009764	Peatland	MRLMDNALGEASLPSKAEEVLRKFFNEMSTFMINQS
Ga0126350_121296822	3300010880	Boreal Forest Soil	RLMNSAFGEAALPAEAEQVLRKFLDGMSTFMINRVEP*
Ga0137380_106694731	3300012206	Vadose Zone Soil	MRLMENALGEASLPSKAEEVLRKFFNEMSTFMINQSESGIS*
Ga0137377_104856271	3300012211	Vadose Zone Soil	MQLMENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS*
Ga0137390_103183403	3300012363	Vadose Zone Soil	MENALGEASLPSKAEEVLRKFFNEMSTFMINQSEPGIS*
Ga0137398_109929002	3300012683	Vadose Zone Soil	MRLMNRAFEEAALPGEAEQVLRKFLDGMSSFMINQVEQ*
Ga0137359_106156062	3300012923	Vadose Zone Soil	MQLMDNALGKASLPSKAEEVLRKFFDEMSTFMINQPEAKKT*
Ga0182018_102769522	3300014489	Palsa	MHLMNSAFGEAALPEEAEQVLRKFFDEMSTFMINRPEPGTR*
Ga0182018_104384352	3300014489	Palsa	MHLMNSALGEAALPEKAEQVLRKFFNEMSTFMINQSESATR*
Ga0181522_109604452	3300014657	Bog	LMDNALGEASLPSKAEEVLRKFFNEMSTFMINQSEPRIS*
Ga0137412_106005262	3300015242	Vadose Zone Soil	MRLMDSAFGEAALPAEAEQVLRKFLDEMSSFMINWAEP*
Ga0137409_111279672	3300015245	Vadose Zone Soil	LMNSAFGEAALPGEAEQVLRKFLDGMSSFMINQVDPGVR*
Ga0187879_100225602	3300017946	Peatland	MRLMDNALGEASLPSKAEEVLRKFFNEMSTFMINQSEPRIS
Ga0187872_101650562	3300018017	Peatland	MRLMENALGEASLPSNAEEVLRKFFNEMSTFMINQSEASIS
Ga0187864_102607981	3300018022	Peatland	RLMENALGEASLPSRAEEVLRKFFNEMSTFMINQSEASIS
Ga0187863_100556392	3300018034	Peatland	MENALGEASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0187863_100675771	3300018034	Peatland	MDNALGEASLPSRAEEVLRKFFKEMSTFMINQSEARIS
Ga0187863_104292623	3300018034	Peatland	MENALGEASLPSNAEGVLRKFFNEMSTFMINQSEP
Ga0187887_103048251	3300018043	Peatland	RDRRMRLMDNALGEASRPSRAEEVLRKFFKEMSTFMINQSEARIS
Ga0187887_108667692	3300018043	Peatland	WMRAFGEAALPKEAEQVLRTFLDRMSTFTINQSESGIS
Ga0187851_100002432	3300018046	Peatland	MENALGEASLPSRAEEVLRKFFNEMSTFMINQSEASIS
Ga0187851_103866892	3300018046	Peatland	MENALREASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0187859_105763251	3300018047	Peatland	MRLMENALGEASLPSKAEEVLQKFFSEMSTFMINQSESRNS
Ga0181510_12521102	3300019240	Peatland	MRLMDNALGEASLPSKAEEVLRKFFNEMSTFLINQSEPRIS
Ga0193726_10085395	3300020021	Soil	MENALGEASLPSKAEEFLRKFFNEMSTFMINQSESGIS
Ga0193726_12084702	3300020021	Soil	RLMDNAFGEAALPAEAEQILRTFLDGMSSFMINRAES
Ga0210399_105838281	3300020581	Soil	MDGAFGEAALPAEAEQVLRKFLDGMSSFMINRAEP
Ga0210395_100000554	3300020582	Soil	MENALGEASLPGRAEEVLRKFFDEMSTFMINQSEARIS
Ga0210395_102663332	3300020582	Soil	MRAFGEAALPKETEQVLLKFLDQMSTFMINQSESGIS
Ga0210401_108952012	3300020583	Soil	MRLMDSAFGEAALPAEAEQILRKFLDGMSSFMINRVEP
Ga0210404_105125472	3300021088	Soil	MENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS
Ga0210400_100404001	3300021170	Soil	RLMENALGEASLPSKAEKVLRKFFTETSTFMINQSETGIS
Ga0210396_107808122	3300021180	Soil	LMNNAFGEAALPAEAEQVLRKFFDGMSSFMINQAEPGVR
Ga0210393_100979522	3300021401	Soil	MENALREVSLPSNAEEVLRKFFNEMSTFMINQSESGIS
Ga0210393_101463352	3300021401	Soil	MNSAFGEAALPEKAEQVLRKFLDEMSTFMINQPEP
Ga0210394_105274421	3300021420	Soil	MRAFGEAALPKEAEQVLRKFLGEMSTFMINRVEPGMH
Ga0210398_113019342	3300021477	Soil	NALGEASLPSKAEEVLRKFFNEMSIFMINQSESGIS
Ga0228598_10112822	3300024227	Rhizosphere	MRLMENALGEASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0208563_10516702	3300025501	Peatland	MRLMDNALGEASLPSKAEEVLRKFFNEMSTFMINQSEASIS
Ga0207685_102649642	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LMDSAFEEAALPEKAEQVLRKFLDEMSTFMINQPEPGMR
Ga0207693_113358011	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	NALEEASLPSNAEEVLRKFFNEMSTFMINQSESGIS
Ga0207665_100158861	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	RLMENALGEASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0209154_13264801	3300026317	Soil	WMRLMENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS
Ga0209267_12302781	3300026331	Soil	MENALGEASLPSNAEEVLRKFFNDMSTFMINQSEPGIS
Ga0257162_10202392	3300026340	Soil	MQLMENALGEASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0208724_10356272	3300027064	Forest Soil	MENALGEASLPSKAEEVLRKFFNEMSTFMINQSESG
Ga0208365_10058281	3300027070	Forest Soil	MRLMENALGEASLPSQAEEVLRKFFNEMSTFMINQSDPGIS
Ga0208237_10267551	3300027080	Forest Soil	MDNALGEASLPSGAEEVLRTFFNEMSTFMINQSEARIS
Ga0208239_10139401	3300027168	Forest Soil	MRAFGEAAPPKEAEQVLLTFLDRMSTFMINQSESGII
Ga0209008_10061392	3300027545	Forest Soil	MENALGEASLPSKAEEVLRKFFNDLSTFMINQSESGIS
Ga0209219_11029952	3300027565	Forest Soil	NALGEASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0209116_10027602	3300027590	Forest Soil	MENALGEASLPSNAEEVLRKFFNEMSTFMINQSEARIS
Ga0209221_11248132	3300027609	Forest Soil	QDWMRAFVEAALPKEAEQVLRKFLDRMSTFVINQSESGIS
Ga0209330_11195122	3300027619	Forest Soil	ENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS
Ga0209422_10210891	3300027629	Forest Soil	ENALGEASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0209038_101158111	3300027737	Bog Forest Soil	ALGEASLPSNAEEVLRKFFNEMSTFMINQSEAGIS
Ga0209908_101857351	3300027745	Thawing Permafrost	MRLMNSAFGEAALPEKAEQVLRKFLEEMSTFMINQPEPGMR
Ga0209908_101991572	3300027745	Thawing Permafrost	MRLMDNALREASLPSRAEEVLRKFFNEMSTFMINQSEARIS
Ga0209773_103974102	3300027829	Bog Forest Soil	MGLMENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS
Ga0209167_103020401	3300027867	Surface Soil	MRLMENALGEASLPSKAEEVLRKFFNEMSTFMINQSESGI
Ga0209380_103847262	3300027889	Soil	MRLMENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS
Ga0209415_105126552	3300027905	Peatlands Soil	MNSAFGEAALPEEAEQVLRKFLDEMSTFMINQPEPGMR
Ga0265355_10144951	3300028036	Rhizosphere	MDNALGEASLPSRAEEVLRKFFNEMSTFMINQSEARIS
Ga0302233_101457231	3300028746	Palsa	DNALGEASLPSKAEEVLWKFFNETSTFMINQSEAGIS
Ga0302303_100484043	3300028776	Palsa	MRLMNSAFGEAALPEDAEQVLRKFLDEMSTFMINQPEPGMR
Ga0302221_102679901	3300028806	Palsa	MDNALGEASLPSSAEEVLREFFNEMSTFMINQSEARIS
Ga0311368_106695081	3300029882	Palsa	RLMNSAFGEAALPEDAEQVLRKFLDEMSTFMINQPEPGMR
Ga0311359_111669301	3300029914	Bog	LMENALREASLPSKAEEVLRKFFNEMSTFMINQSESGIS
Ga0311340_107719022	3300029943	Palsa	RLMENALGEASLPSNAEEVLRKFFNEMSTFMINQSEPGIS
Ga0311340_115336211	3300029943	Palsa	RLMDNALGKASLPGEAEQVLRKFFNEMSTFMINQP
Ga0265762_10039874	3300030760	Soil	MRLMNSAFAEAALPAEAEQVLRKFLDGMSSFMINQVEPGVG
Ga0302323_1034049571	3300031232	Fen	DRWMRLMDSAFGEAALPAEAEQVLRKFLDEMSSFMINWAEP
Ga0302326_103985235	3300031525	Palsa	MRLMNNAFEEAALSAETEQVLRKFHDEMSTFMINQPEPGMR
Ga0310686_1162506262	3300031708	Soil	MNNAFGEAALPAEAEQVLRKFLDGMSSFMINQAEPGVR
Ga0310686_1165735512	3300031708	Soil	AFGEAALPKEAEQVLRKFLDQMSTFMINQSKSGIS
Ga0302319_112426972	3300031788	Bog	ALGEAALPSRAEEVLRKFFNEMSTFMINQSEARIS
Ga0307478_112773892	3300031823	Hardwood Forest Soil	MRLMENALGEASLPSKAEEVLRKFFNEMATFMINQSEPGIS
Ga0311301_117892071	3300032160	Peatlands Soil	MGLMNSAFEEAALPGEAEQVLRKFLDGMSSFMINRVEPGVR
Ga0307470_100033796	3300032174	Hardwood Forest Soil	MENALGEDSLPSKAEDVLRKFLNEMSTFMINQSES
Ga0307470_103056652	3300032174	Hardwood Forest Soil	ALGEASLPSKAEEVLRKFFNEMSTFMINQSEPGIS
Ga0334837_122625_406_516	3300033823	Soil	LMNSAVGEAALPAEAEQVLRKFFDGMSSFMINRVEP
Ga0334854_118826_107_223	3300033829	Soil	MNSAFGVAALPVEAEQVLRKFLDEMSTFMINHPEPGTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101585

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences