Metagenome / Metatranscriptome Family F101678

Basic Information
Family ID	F101678
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	41 residues
Representative Sequence	RSTPVVPLEDGRRALALALDIVAAIREHGKKVGLAGMAKTKA
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.00 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	86.27 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (73.529 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.804 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13103	TonB_2	10.78
PF13545	HTH_Crp_2	1.96
PF02900	LigB	1.96
PF00072	Response_reg	0.98
PF16320	Ribosomal_L12_N	0.98
PF12706	Lactamase_B_2	0.98
PF04342	DMT_6	0.98
PF01431	Peptidase_M13	0.98
PF12681	Glyoxalase_2	0.98
PF00903	Glyoxalase	0.98
PF01745	IPT	0.98
PF01288	HPPK	0.98
PF00069	Pkinase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0801	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis)	Coenzyme transport and metabolism [H]	0.98
COG3169	Uncharacterized membrane protein, DMT/DUF486 family	Function unknown [S]	0.98
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.45 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.86 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.90 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	0.98 %
Terriglobus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus	0.98 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.98 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.98 %
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.86 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.92 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.98 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	0.98 %
Terriglobus saanensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis	0.98 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.98 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000574\|JGI1357J11328_10165082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	617	Open in IMG/M
3300002245\|JGIcombinedJ26739_101127221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300003368\|JGI26340J50214_10000697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11434	Open in IMG/M
3300004092\|Ga0062389_101209953	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300005180\|Ga0066685_11046132	Not Available	537	Open in IMG/M
3300005436\|Ga0070713_100062182	All Organisms → cellular organisms → Bacteria	3126	Open in IMG/M
3300005437\|Ga0070710_11068945	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005439\|Ga0070711_100081299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2309	Open in IMG/M
3300005534\|Ga0070735_10052374	All Organisms → cellular organisms → Bacteria	2695	Open in IMG/M
3300005534\|Ga0070735_10391527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300005538\|Ga0070731_10851272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	605	Open in IMG/M
3300005542\|Ga0070732_11001834	Not Available	511	Open in IMG/M
3300005602\|Ga0070762_10109968	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1606	Open in IMG/M
3300005602\|Ga0070762_10492771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300005602\|Ga0070762_11144638	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis	537	Open in IMG/M
3300005610\|Ga0070763_10292481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	893	Open in IMG/M
3300005876\|Ga0075300_1044330	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300006028\|Ga0070717_10749818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	888	Open in IMG/M
3300006050\|Ga0075028_100715068	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300006162\|Ga0075030_100163482	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300006174\|Ga0075014_100600604	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300006176\|Ga0070765_100951024	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300006176\|Ga0070765_101753631	Not Available	583	Open in IMG/M
3300006854\|Ga0075425_102207769	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009520\|Ga0116214_1110674	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300009616\|Ga0116111_1056613	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300010366\|Ga0126379_10759656	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300010379\|Ga0136449_100185368	All Organisms → cellular organisms → Bacteria	3993	Open in IMG/M
3300011269\|Ga0137392_11411815	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300012917\|Ga0137395_10916109	Not Available	633	Open in IMG/M
3300012927\|Ga0137416_10310984	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300012984\|Ga0164309_11842241	Not Available	519	Open in IMG/M
3300014654\|Ga0181525_10795407	Not Available	534	Open in IMG/M
3300014658\|Ga0181519_10840067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	568	Open in IMG/M
3300016357\|Ga0182032_10358088	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300017930\|Ga0187825_10352007	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300017936\|Ga0187821_10021636	All Organisms → cellular organisms → Bacteria	2246	Open in IMG/M
3300017943\|Ga0187819_10821013	Not Available	522	Open in IMG/M
3300017946\|Ga0187879_10332275	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	843	Open in IMG/M
3300017975\|Ga0187782_11373808	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300017975\|Ga0187782_11650479	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300018006\|Ga0187804_10019487	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300018040\|Ga0187862_10289046	All Organisms → cellular organisms → Bacteria → Acidobacteria	1039	Open in IMG/M
3300018043\|Ga0187887_10252624	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300018062\|Ga0187784_10349544	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300018086\|Ga0187769_11431365	Not Available	523	Open in IMG/M
3300018090\|Ga0187770_10967496	Not Available	684	Open in IMG/M
3300018431\|Ga0066655_10275630	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300020581\|Ga0210399_11545030	Not Available	513	Open in IMG/M
3300020582\|Ga0210395_10376139	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300020582\|Ga0210395_11125138	Not Available	579	Open in IMG/M
3300021168\|Ga0210406_10194531	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300021170\|Ga0210400_10567239	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300021170\|Ga0210400_10646046	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300021181\|Ga0210388_10977327	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300021181\|Ga0210388_11610797	Not Available	539	Open in IMG/M
3300021402\|Ga0210385_10125461	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1816	Open in IMG/M
3300021402\|Ga0210385_10907929	Not Available	676	Open in IMG/M
3300021407\|Ga0210383_10969615	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300021420\|Ga0210394_10651611	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300021445\|Ga0182009_10019674	All Organisms → cellular organisms → Bacteria	2534	Open in IMG/M
3300021559\|Ga0210409_10341321	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300021559\|Ga0210409_10447698	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300022508\|Ga0222728_1016691	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300022732\|Ga0224569_103572	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300025404\|Ga0208936_1013049	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300026329\|Ga0209375_1286208	Not Available	540	Open in IMG/M
3300027072\|Ga0208238_1025531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300027109\|Ga0208603_1054454	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	606	Open in IMG/M
3300027168\|Ga0208239_1025969	Not Available	571	Open in IMG/M
3300027537\|Ga0209419_1083508	Not Available	632	Open in IMG/M
3300027648\|Ga0209420_1012424	All Organisms → cellular organisms → Bacteria	2958	Open in IMG/M
3300027648\|Ga0209420_1214708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300027676\|Ga0209333_1101974	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300027825\|Ga0209039_10301281	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300027855\|Ga0209693_10485101	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300027862\|Ga0209701_10124480	All Organisms → cellular organisms → Bacteria → Acidobacteria	1594	Open in IMG/M
3300027869\|Ga0209579_10132609	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1325	Open in IMG/M
3300027898\|Ga0209067_10579478	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300027903\|Ga0209488_10650486	Not Available	760	Open in IMG/M
3300027911\|Ga0209698_10112216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2269	Open in IMG/M
3300028565\|Ga0302145_10304995	Not Available	526	Open in IMG/M
3300028731\|Ga0302301_1167918	Not Available	540	Open in IMG/M
3300028906\|Ga0308309_11483624	Not Available	580	Open in IMG/M
3300029636\|Ga0222749_10500597	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300029882\|Ga0311368_10028153	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5365	Open in IMG/M
3300029944\|Ga0311352_11063315	Not Available	620	Open in IMG/M
3300030056\|Ga0302181_10138907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1169	Open in IMG/M
3300030519\|Ga0302193_10299925	Not Available	847	Open in IMG/M
3300030740\|Ga0265460_13090750	Not Available	501	Open in IMG/M
3300031231\|Ga0170824_120911820	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031233\|Ga0302307_10019347	All Organisms → cellular organisms → Bacteria → Acidobacteria	3830	Open in IMG/M
3300031247\|Ga0265340_10557253	Not Available	504	Open in IMG/M
3300031754\|Ga0307475_10141333	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1907	Open in IMG/M
3300031823\|Ga0307478_10472161	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1044	Open in IMG/M
3300032180\|Ga0307471_100989142	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300032180\|Ga0307471_103736739	Not Available	538	Open in IMG/M
3300032515\|Ga0348332_13685329	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300032898\|Ga0335072_11049369	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300034282\|Ga0370492_0107882	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.45%
Aquatic	Environmental → Aquatic	19.61%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.61%
Freshwater	Environmental → Aquatic → Freshwater	14.71%
Peat	Environmental → Terrestrial → Peat	6.86%
Sediment	Environmental → Aquatic → Sediment	4.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.18%
Loam	Environmental → Terrestrial → Soil → Loam	20.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.84%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300025404	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300027072	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF013 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027168	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1357J11328_101650822	3300000574	Groundwater	RSKPVVPLEDGRRALAVALDILAQIREHGRRINLEGIVRQ*
JGIcombinedJ26739_1011272212	3300002245	Forest Soil	VPLEDGRRALALALDVVGAIREHGKKVGLAGIAKAKG*
JGI26340J50214_1000069715	3300003368	Bog Forest Soil	RSQPVVPLEDGRRALALALEIVAAIREHGKRVDLAGLAKTKH*
Ga0062389_1012099532	3300004092	Bog Forest Soil	VPLEDGRRALALALDLVAEIGKHGTKVGLTGIAFSKPTL*
Ga0066673_100123751	3300005175	Soil	VRTRSSAAVPLEDGRRALAVALKILEAIGEHSRNVNLEKLR*
Ga0066685_110461322	3300005180	Soil	QRSTPVVSLEDGKRALGLALEIVGAIRAHGTKVGLAGMATVRQ*
Ga0070713_1000621825	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VRERSTPVVSLEEGRRALALALEILAAVREHAKKVGLARA*
Ga0070710_110689451	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PVVPLEDGRRALALALEIVAAIRDHGAKVDLAGIASSKL*
Ga0070711_1000812993	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LQAVRDRSTPVVPLDDGRHALALALEIVSAIRDHGNKVGLAGMAKS*
Ga0070735_100523741	3300005534	Surface Soil	SKPVVPVEEGRRALALALDIVAAIREHGKRVGLAGMAKVKS*
Ga0070735_103915271	3300005534	Surface Soil	SKPVVPVEEGRRALALALDIVAAIREHGKRVGLAGMAKVKG*
Ga0070731_108512723	3300005538	Surface Soil	VSIEDGRRALALALDIVGAIRDHGKKVGLAGLAGNKS*
Ga0070732_110018343	3300005542	Surface Soil	AVRQRSTAAVPLEDGRRALALALDIVQAIREHGKKIDLAGIAEGRH*
Ga0066705_107645711	3300005569	Soil	QQPIVPLEDGRRALAVALDILGRIREHGRRLNLEKLR*
Ga0070762_101099682	3300005602	Soil	VRERSEPEVPLEDGRRALALALEIVAAIREHGKKVDLAGIAKKTKH*
Ga0070762_104927711	3300005602	Soil	LEDGRRALALALDVVGAIREHGKKVGLAGIAKAKG*
Ga0070762_111446381	3300005602	Soil	PLVPLAEGRRALALALEIVAAIREHGKRVGLSGIAKKQP*
Ga0070763_102924812	3300005610	Soil	STPVVPLEDGRRALALALDVVGAIREHGKKVGLAGIAKAKG*
Ga0075300_10443302	3300005876	Rice Paddy Soil	RERSAPVVPLEDGRRALALALEIVAGIREHGNKVGLAAINPNKH*
Ga0070717_107498182	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KSFLRAVRQRSTPIVSLEDGKRALGLALEIVAAIRAHGTKVGLAGMATVRQ*
Ga0075028_1007150682	3300006050	Watersheds	STPIVPLEDGRRALALALEIISAIRDHGAKVDLAGMTSGKH*
Ga0075030_1001634821	3300006162	Watersheds	VRERSTPVVPLEDGRRALALALEIVSAIREHDKRLDVAGIAKP*
Ga0075014_1006006041	3300006174	Watersheds	VPLEDGRRALALALEIISAIRDHGKKIDLAGIAKVKN*
Ga0070765_1009510243	3300006176	Soil	ERSAPVVPLEDGRRALALAFEIVAAIRDHGRKVDVAGMARS*
Ga0070765_1017536312	3300006176	Soil	AVRERSTPVVPIGDGRRALALALDIVETIREHGNKVGLAGLTKAKG*
Ga0075425_1022077693	3300006854	Populus Rhizosphere	SLEDGRRALALALEIVGAIREHAKKVGLVGAAKAKG*
Ga0116214_11106742	3300009520	Peatlands Soil	VRQRSTPVVPLEDGRRSLALALDIVAEIREHGKKVDLAGIAKATH*
Ga0116111_10566131	3300009616	Peatland	PLEDGRRALALALEIVAAIRDHGKKVGLPGIADAKH*
Ga0126379_107596561	3300010366	Tropical Forest Soil	HAVWNRSTPLVPLEDGRRALALALEIVTAIREHGSKVGLRSMAGH*
Ga0136449_1001853684	3300010379	Peatlands Soil	VVPLEDGRRALALALEIVSAIREHGANVGLAGIAHARP*
Ga0137392_114118151	3300011269	Vadose Zone Soil	QRSAPLVPLEDGRRELALALDIVAAIREHGTKVGLAGIAKAKV*
Ga0137395_109161091	3300012917	Vadose Zone Soil	STPVVPLEDGRRSLALAFDIVDAIRDHGRKVGVSGMGKAKG*
Ga0137416_103109841	3300012927	Vadose Zone Soil	NRSASLVPLEDGRRALALALDIVSAIRDHGKKVDLATLAKTPN*
Ga0164309_118422411	3300012984	Soil	TPVVPLEDGRRALALALEIVAAIRERGAKVGHAGLAKS*
Ga0181525_107954072	3300014654	Bog	VRERSTPVVPLSDGRRSLALALEIVAAIREHGSKVGLTDLAQLKI*
Ga0181519_108400672	3300014658	Bog	STPVVSLEDGRRALALALEIVAAVGEHGSKVGIGDLAKPKA*
Ga0182032_103580881	3300016357	Soil	RHRSTPVVPLEDGHRALALALEILAGIREHSKKVGLGKS
Ga0187825_103520071	3300017930	Freshwater Sediment	SEPVVPLEDGRRALALALEIVAGIREHGKKVGLAGIAKG
Ga0187821_100216361	3300017936	Freshwater Sediment	ERTTPVVSLDEGRRALALALEIVAAIRAHGKKIDVAAMVRS
Ga0187819_108210131	3300017943	Freshwater Sediment	RSTPVVPLEDGRRALALALDIVAAIREHGKNVGLAGLAKAKG
Ga0187879_103322753	3300017946	Peatland	VSLDDGHRALALALEILAAIREHGKKVGLAGLAKAKV
Ga0187782_113738082	3300017975	Tropical Peatland	SAVPLEDGRRALDLALQIVAAIGEHGKKIDLPSIAKMR
Ga0187782_116504791	3300017975	Tropical Peatland	VPLEDGRRALALALEIVSAIREHGKRIDLASMTRAGR
Ga0187804_100194873	3300018006	Freshwater Sediment	SLEDGRRALGLALEIVAAIREHGNKVGLVGMAKAKS
Ga0187862_102890461	3300018040	Peatland	PVVPLEDGRRALGLALEIVGAIRDHGKKVDLAGMGKAKY
Ga0187887_102526242	3300018043	Peatland	VPLEDGRRALALALEIVAAIREHGKKVDLAGIARKKH
Ga0187784_103495442	3300018062	Tropical Peatland	VRQRSTPEVPLEDGRRALALALEIVAAIREHGKNIDLAGIART
Ga0187769_114313652	3300018086	Tropical Peatland	AVRERTKPVVSLEEGRNALKLALEILSEIRRHAGRVGMAGD
Ga0187770_109674961	3300018090	Tropical Peatland	TPVVSLDDGRRALALALDIVAAIRDHSKRIDLAGIAKRN
Ga0066655_102756301	3300018431	Grasslands Soil	FTPWVSLEDGRSALGLALDNVAAMREHGNKVGLAAIGHTKQ
Ga0210399_115450301	3300020581	Soil	RERSAPDVPLEDGRRSLALALEIVAAIREHGKKVDLAGITTAKD
Ga0210395_103761393	3300020582	Soil	PEVPLEDGRRALALALEIVAAIREHGKKVDLAVIAKKKH
Ga0210395_111251381	3300020582	Soil	SLEDGHRALALALEIVSAIRDHGKKIDLAGLAKGKR
Ga0210406_101945312	3300021168	Soil	VVPLEDGRRALALALEVVAAIREHGKRVDLAGIAKAKH
Ga0210400_105672391	3300021170	Soil	APAVSLEDGRRALALALDIVAAIGDHGKKVDLPTIAGATR
Ga0210400_106460461	3300021170	Soil	PPAVSLEDGRRALALALDIVAAIGDHGKKVDLPTIAGATR
Ga0210388_109773271	3300021181	Soil	PVVPLEDGRRALALALEIVSAIREHGAKVGLAGIGHARH
Ga0210388_116107971	3300021181	Soil	STPVVPLSDGRRALALALDIVAAIREHGKRVGLAGLAKT
Ga0210385_101254611	3300021402	Soil	SEPEVPLKDGLRSLALALDIVAAIRAHGQNVNLASIAK
Ga0210385_109079291	3300021402	Soil	VPLEDGRRALALALEIVAAIREHGKKVDLAGIAKKTKH
Ga0210383_109696152	3300021407	Soil	SAPDVPLEDGRRSLALALEIVAAIREHGKKLDLAGIATAKH
Ga0210394_106516112	3300021420	Soil	TPVVPLEDGRRALALALEIVDAIRDHGTKVNLAGIAKAKP
Ga0182009_100196741	3300021445	Soil	PVVPLEDGRRALALALEIVASIREHGNKVGLAEINHSKK
Ga0210409_103413212	3300021559	Soil	RFMPLVPLAEGRRALALALEIVAAIREHGKRVGLSGIAKKQP
Ga0210409_104476982	3300021559	Soil	VVPLEDGRRALALALEIVDAIRDHGKKVGLAGIAKAKH
Ga0222728_10166912	3300022508	Soil	RSFLHAVRQRSTPVVPLDDGRRALSLALDIVGAIREHGKKVGLAGIAKTKS
Ga0224569_1035722	3300022732	Rhizosphere	QRSAPVVPIDDGRRALALALDIVSAIREHGKKVGLAGLARAKG
Ga0208936_10130492	3300025404	Peatland	RERSTPVVPLKDGRRALALALDIVAAIREHGKKVGLAGMAKTKA
Ga0209375_12862082	3300026329	Soil	NAVRHRSAPAVSLEDGRRALALALDIVAAIRDHGKKVDLPTIAGATR
Ga0208238_10255311	3300027072	Forest Soil	LHAVRQRSTPLVPLDHGRRALALALEIVDAIRQHGNKVGLADLANAKG
Ga0208603_10544542	3300027109	Forest Soil	TPVVPLEDGRRALALALDIVAAIRAHGKKVGLGTLAKAKG
Ga0208239_10259691	3300027168	Forest Soil	RPEVPLEDGRRALALALEIVAAIRDHGKKVDLAGIGKTEH
Ga0209419_10835082	3300027537	Forest Soil	PVVSLEDGRRALGLALEILGAIRDHGKKVGLAGIAKSKH
Ga0209420_10124241	3300027648	Forest Soil	VVPLEDGRRALALALDIVAAIREHGKKVGLAGIARAKV
Ga0209420_12147082	3300027648	Forest Soil	AVRQRSTPLVPLDHGRRALALALEIVDAIRQHGNKVGLADLANAKG
Ga0209333_11019741	3300027676	Forest Soil	LEDGRRALALALEIVDAIRDHGTKVNLAGIAKAKP
Ga0209039_103012812	3300027825	Bog Forest Soil	SVPMVPLDEGRRSLALALDIVAVIAEHGKKVGLGRLAKSQP
Ga0209693_104851011	3300027855	Soil	RSTPVVPLEDGRRALALALDVVGAIREHGKKVGLAGIAKAKG
Ga0209701_101244801	3300027862	Vadose Zone Soil	QRATPDVPLEDGRRALALALDIVAAIRDHGKKVGLSGLAKAKG
Ga0209579_101326091	3300027869	Surface Soil	RERSTPVVPLEDGRRALALALEIVAAIREHGKKVDLAGIVGSKH
Ga0209067_105794781	3300027898	Watersheds	LKSFLHAVRERSTPVVPLEDGCRALALALEIVSAIRDHGKKVDLAGIAKVKS
Ga0209488_106504862	3300027903	Vadose Zone Soil	VRQRSTPVVPLEDGRRSLALAFDIVDAIREHGKKVGVAGMAKTKR
Ga0209698_101122163	3300027911	Watersheds	VRERSTPVVPLEDGRRALALALEIVSAIREHDKRLDVAGIAKP
Ga0302145_103049951	3300028565	Bog	ERSTPVVPLKDGRRALALALDIVAAIREHGKKVGLAGMAKTKA
Ga0302301_11679181	3300028731	Palsa	STPVVPLDDGRRALALALEIVAAIREHARKIDLAVMA
Ga0308309_114836241	3300028906	Soil	SLEDGHRALALALEIVSAIRDHGKKIDLAGIAKGKR
Ga0222749_105005971	3300029636	Soil	VVPLADGRRALALALDIVAAIGEHGKKIGLSAIAKSKN
Ga0311368_100281538	3300029882	Palsa	RSTPVVPLEDGRRALALALDIVAAIREHGKKVGLAGMAKTKA
Ga0311352_110633151	3300029944	Palsa	ERSTPVVPLDDGRRALALALEIVAAIREHARKIDLAVMA
Ga0302181_101389071	3300030056	Palsa	LEDGRRSLALALDIVGAIREHGKKVGLAGLAKAKR
Ga0302193_102999251	3300030519	Bog	LEDGRRALALALDIVGAIREHGKKVGLAGLAKVKG
Ga0265460_130907501	3300030740	Soil	VVPLEDGRRALALALDIVAEIREHGKKVGLAGIAKAKG
Ga0170824_1209118202	3300031231	Forest Soil	VPLEDGLRALALALEIVAAIREHGKKVDLAGIANARP
Ga0302307_100193474	3300031233	Palsa	ERSTPLVPLEDGQRALALALEIVAAIRDHGKKVDLAGIAKTGH
Ga0265340_105572531	3300031247	Rhizosphere	RSTPVVPLEDGRRALALALEVVAAIREHGKKVDLAGIAKSKD
Ga0307475_101413333	3300031754	Hardwood Forest Soil	PLVPLEDGRRALALALDIVAAIRQHGQSVNLAGIATA
Ga0307478_104721611	3300031823	Hardwood Forest Soil	PVVPLEDGRRALALALEIVQAIREHGKKVGLAGLAKAKG
Ga0307471_1009891421	3300032180	Hardwood Forest Soil	RSTPIVSLEDGKRALGLALEIVAAIRAHGTKVGLAGMATVRQ
Ga0307471_1037367391	3300032180	Hardwood Forest Soil	VPLEDGLRALALALEIVAAIREHGKKVDLAGIAKARH
Ga0348332_136853292	3300032515	Plant Litter	SAPVVPIDDGRRALALALDIVGAIREHGKKVGLAGLARAKG
Ga0335072_110493692	3300032898	Soil	RGRSKPAVPVEEGRRALELAFDIVAAIRQHGKKVGLAGMAKRG
Ga0370492_0107882_961_1077	3300034282	Untreated Peat Soil	VVPLEDGQRALALALEIVAAIREHGNRAGLADLAKLKT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101678

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign