NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101702

Metagenome / Metatranscriptome Family F101702

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101702
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 58 residues
Representative Sequence MRKQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR
Number of Associated Samples 58
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 28.71 %
% of genes near scaffold ends (potentially truncated) 22.55 %
% of genes from short scaffolds (< 2000 bps) 73.53 %
Associated GOLD sequencing projects 53
AlphaFold2 3D model prediction Yes
3D model pTM-score0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (64.706 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(30.392 % of family members)
Environment Ontology (ENVO) Unclassified
(37.255 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(80.392 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.49%    β-sheet: 39.53%    Coil/Unstructured: 56.98%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
b.34.13.0: Chromo domain-liked3m9qa_3m9q0.82
b.34.9.1: Tudor/PWWP/MBTd2g3ra22g3r0.81
b.34.9.1: Tudor/PWWP/MBTd2l8da12l8d0.8
b.34.4.4: Electron transport accessory proteinsd3a8gb_3a8g0.78
b.34.4.4: Electron transport accessory proteinsd3hhtb_3hht0.78


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF00072Response_reg 6.86
PF01381HTH_3 1.96
PF13191AAA_16 0.98
PF00719Pyrophosphatase 0.98
PF00196GerE 0.98
PF03551PadR 0.98
PF13462Thioredoxin_4 0.98
PF00793DAHP_synth_1 0.98
PF09509Hypoth_Ymh 0.98
PF01741MscL 0.98
PF01546Peptidase_M20 0.98
PF00596Aldolase_II 0.98
PF12728HTH_17 0.98
PF01833TIG 0.98
PF05638T6SS_HCP 0.98
PF14329DUF4386 0.98
PF10996Beta-Casp 0.98
PF02353CMAS 0.98
PF01266DAO 0.98
PF13188PAS_8 0.98
PF01068DNA_ligase_A_M 0.98
PF13638PIN_4 0.98
PF07862Nif11 0.98
PF01844HNH 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0221Inorganic pyrophosphataseEnergy production and conversion [C] 0.98
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.98
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.98
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.98
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.98
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.98
COG1970Large-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 0.98
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.98
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 0.98
COG2230Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferasesLipid transport and metabolism [I] 0.98
COG3157Type VI protein secretion system component Hcp (secreted cytotoxin)Intracellular trafficking, secretion, and vesicular transport [U] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A64.71 %
All OrganismsrootAll Organisms35.29 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908006|FWIROz_GJ87FRN02GIX1CNot Available526Open in IMG/M
3300001593|JGI12635J15846_10004534All Organisms → cellular organisms → Bacteria → Acidobacteria11973Open in IMG/M
3300001593|JGI12635J15846_10011644All Organisms → cellular organisms → Bacteria → Acidobacteria7389Open in IMG/M
3300001593|JGI12635J15846_10285007All Organisms → Viruses → Predicted Viral1041Open in IMG/M
3300001593|JGI12635J15846_10540751Not Available683Open in IMG/M
3300002245|JGIcombinedJ26739_101493651Not Available571Open in IMG/M
3300002245|JGIcombinedJ26739_101740257Not Available523Open in IMG/M
3300005602|Ga0070762_10207967All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1200Open in IMG/M
3300005602|Ga0070762_10539366Not Available769Open in IMG/M
3300005610|Ga0070763_10168173Not Available1155Open in IMG/M
3300005921|Ga0070766_10400471Not Available899Open in IMG/M
3300005944|Ga0066788_10065730Not Available868Open in IMG/M
3300005944|Ga0066788_10092355Not Available744Open in IMG/M
3300005994|Ga0066789_10139428All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300006173|Ga0070716_101625721All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax boronicumulans531Open in IMG/M
3300006176|Ga0070765_100456346All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha1198Open in IMG/M
3300006176|Ga0070765_100996838Not Available792Open in IMG/M
3300006176|Ga0070765_101224955Not Available709Open in IMG/M
3300006176|Ga0070765_101493090All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium636Open in IMG/M
3300006176|Ga0070765_102259565Not Available507Open in IMG/M
3300006893|Ga0073928_10006161All Organisms → cellular organisms → Bacteria → Acidobacteria16303Open in IMG/M
3300006893|Ga0073928_10147797All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1899Open in IMG/M
3300012361|Ga0137360_10179971Not Available1698Open in IMG/M
3300012582|Ga0137358_10054996All Organisms → cellular organisms → Bacteria → Acidobacteria2657Open in IMG/M
3300012582|Ga0137358_10468146Not Available850Open in IMG/M
3300012917|Ga0137395_11085184Not Available568Open in IMG/M
3300014489|Ga0182018_10000419All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae55533Open in IMG/M
3300014489|Ga0182018_10000548All Organisms → cellular organisms → Bacteria47995Open in IMG/M
3300014489|Ga0182018_10004395All Organisms → cellular organisms → Bacteria → Acidobacteria11867Open in IMG/M
3300014489|Ga0182018_10009961Not Available6897Open in IMG/M
3300014489|Ga0182018_10206180All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1097Open in IMG/M
3300014495|Ga0182015_10048813All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans3106Open in IMG/M
3300014501|Ga0182024_10009783All Organisms → cellular organisms → Bacteria19729Open in IMG/M
3300014501|Ga0182024_10079794All Organisms → cellular organisms → Bacteria4885Open in IMG/M
3300014501|Ga0182024_10103584Not Available4134Open in IMG/M
3300014501|Ga0182024_10128371All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3611Open in IMG/M
3300014501|Ga0182024_10590689All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1392Open in IMG/M
3300015242|Ga0137412_10031116All Organisms → cellular organisms → Bacteria → Acidobacteria4356Open in IMG/M
3300020579|Ga0210407_11312980Not Available540Open in IMG/M
3300020581|Ga0210399_10611689Not Available901Open in IMG/M
3300020582|Ga0210395_10098392All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2164Open in IMG/M
3300020583|Ga0210401_10013782All Organisms → cellular organisms → Bacteria7844Open in IMG/M
3300020583|Ga0210401_10023983All Organisms → cellular organisms → Bacteria5844Open in IMG/M
3300020583|Ga0210401_10399395Not Available1237Open in IMG/M
3300020583|Ga0210401_10554316Not Available1011Open in IMG/M
3300020583|Ga0210401_10668014Not Available900Open in IMG/M
3300020583|Ga0210401_11090356Not Available657Open in IMG/M
3300020583|Ga0210401_11277579Not Available592Open in IMG/M
3300021171|Ga0210405_10274950Not Available1332Open in IMG/M
3300021171|Ga0210405_10782032Not Available732Open in IMG/M
3300021401|Ga0210393_10640506Not Available868Open in IMG/M
3300021403|Ga0210397_10186519All Organisms → cellular organisms → Bacteria1474Open in IMG/M
3300021405|Ga0210387_11410015Not Available599Open in IMG/M
3300021406|Ga0210386_10570089Not Available978Open in IMG/M
3300021407|Ga0210383_10075744All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans2814Open in IMG/M
3300021407|Ga0210383_10140925All Organisms → cellular organisms → Bacteria2046Open in IMG/M
3300021420|Ga0210394_10505708Not Available1063Open in IMG/M
3300021432|Ga0210384_10056853Not Available3541Open in IMG/M
3300021432|Ga0210384_10943387Not Available764Open in IMG/M
3300021433|Ga0210391_10094405All Organisms → cellular organisms → Bacteria → Acidobacteria2360Open in IMG/M
3300021433|Ga0210391_10353788Not Available1152Open in IMG/M
3300021433|Ga0210391_10869098Not Available704Open in IMG/M
3300021474|Ga0210390_10239244Not Available1537Open in IMG/M
3300021474|Ga0210390_10757995Not Available806Open in IMG/M
3300021477|Ga0210398_10619530Not Available878Open in IMG/M
3300021559|Ga0210409_10887619Not Available765Open in IMG/M
3300021559|Ga0210409_11351648All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium588Open in IMG/M
3300022557|Ga0212123_10025558All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6357Open in IMG/M
3300023250|Ga0224544_1035747Not Available702Open in IMG/M
3300023250|Ga0224544_1052095Not Available588Open in IMG/M
3300025320|Ga0209171_10078064Not Available2090Open in IMG/M
3300026281|Ga0209863_10046872All Organisms → cellular organisms → Bacteria1288Open in IMG/M
3300026291|Ga0209890_10214854Not Available611Open in IMG/M
3300026467|Ga0257154_1015774Not Available1071Open in IMG/M
3300027528|Ga0208985_1022011Not Available1233Open in IMG/M
3300027605|Ga0209329_1005122All Organisms → cellular organisms → Bacteria2292Open in IMG/M
3300027648|Ga0209420_1104062All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium805Open in IMG/M
3300027676|Ga0209333_1009243Not Available3038Open in IMG/M
3300027676|Ga0209333_1189516Not Available545Open in IMG/M
3300027855|Ga0209693_10226442Not Available918Open in IMG/M
3300027867|Ga0209167_10362718Not Available788Open in IMG/M
3300027884|Ga0209275_10319354Not Available865Open in IMG/M
3300027884|Ga0209275_10417434Not Available758Open in IMG/M
3300027895|Ga0209624_10855762All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300027895|Ga0209624_10937512Not Available564Open in IMG/M
3300027908|Ga0209006_10221389Not Available1637Open in IMG/M
3300028047|Ga0209526_10287128All Organisms → cellular organisms → Bacteria → Acidobacteria1117Open in IMG/M
3300028047|Ga0209526_10819305Not Available574Open in IMG/M
3300028906|Ga0308309_10718427Not Available868Open in IMG/M
3300028906|Ga0308309_11242814All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium641Open in IMG/M
3300029636|Ga0222749_10555578Not Available625Open in IMG/M
3300031057|Ga0170834_109777066Not Available609Open in IMG/M
3300031057|Ga0170834_110027761Not Available557Open in IMG/M
3300031057|Ga0170834_112256614Not Available694Open in IMG/M
3300031057|Ga0170834_112438680Not Available601Open in IMG/M
3300031231|Ga0170824_123054866Not Available535Open in IMG/M
3300031715|Ga0307476_10250593Not Available1293Open in IMG/M
3300031720|Ga0307469_11374568Not Available673Open in IMG/M
3300031962|Ga0307479_10148169Not Available2301Open in IMG/M
3300031962|Ga0307479_10277631Not Available1656Open in IMG/M
3300031962|Ga0307479_11437006Not Available648Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil30.39%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil15.69%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil13.73%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa5.88%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.90%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil4.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.90%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost4.90%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring3.92%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil3.92%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.96%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.98%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.98%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908006Soil microbial communities from sample at FACE Site Metagenome WIR_Oz2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005944Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300023250Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14EnvironmentalOpen in IMG/M
3300025320Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026281Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)EnvironmentalOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300026467Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-AEnvironmentalOpen in IMG/M
3300027528Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027648Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FWIROz_013294802124908006SoilVAKQIHVGSMVIVRLHDGREVEAKITKIVDSVVGRKVHISFAVFALIVDEQQVIRPA
JGI12635J15846_10004534233300001593Forest SoilVRKQIQVGSTVVARLHDGRVVVAKVTQIVNSVAGRKAHIRFGAVALIVEVTQIVKAVT*
JGI12635J15846_1001164493300001593Forest SoilMRKQIQVGLTVVARLYDGREVEAKVTAIVDSVAGKGSHHDGLIALKIDPEQIIREVR*
JGI12635J15846_1028500723300001593Forest SoilMHKQIRVGSTVIARLYDGREVEVKITKIVDSVVRRKVHIAFGAFALIVDETQIIKVLS*
JGI12635J15846_1054075123300001593Forest SoilMRRQIQIGSTAVVRLYDGRELVAKITTIVNGPAGQKVHIAFGAFALKIDPKQVIKTVQV*
JGIcombinedJ26739_10149365113300002245Forest SoilMKDLTRRKQIQIGSTVVARLYDGREVEARILQIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
JGIcombinedJ26739_10174025723300002245Forest SoilVPKLIQIGSTVLARLHDGREVEARITKIVDSVAGRRVHIAFGAFALIKNEAHIIRTLDE*
Ga0062389_10456456613300004092Bog Forest SoilVVARLYDGREVEAKVTRIVDSVTGRKVHIAYGLIALKIDPEQIIREVR*
Ga0070762_1020796733300005602SoilILVGSTVTARLHNGRVVVARVTAIVDSVAGRKVHIQFGAFALIVEEMQIIKEMQ*
Ga0070762_1053936613300005602SoilQIQLGPTVLTRLHDGREVEARVTKIVDSVVGRKLHIAFGAFALIIAVVQIIRREVRP*
Ga0070763_1016817313300005610SoilCLGCWIGSAQKMRKQIQIGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIEPEQIIREVR*
Ga0070766_1040047123300005921SoilMRKQIKVGSTVVARLYDGREVEAKVTAIVDSVAGRKVHIAYGIIALKIDPEQIIREVR*
Ga0066788_1006573013300005944SoilKQITVGHTVLVRLYDCREVKAKVTKIVDSVAGRKVHITYGIIALKVDETQIIKALS*
Ga0066788_1009235523300005944SoilVPKQIQVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR*
Ga0066789_1013942813300005994SoilQVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR*
Ga0070716_10162572113300006173Corn, Switchgrass And Miscanthus RhizosphereMLASTVPARFGDGRDVEAKVTKIVDSVLGRRARIAFGAFALIIDEVQIVREVRP*
Ga0070765_10045634623300006176SoilMRKQIQIGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIEPEQIIREVR*
Ga0070765_10099683823300006176SoilMPKQIVVGSTALVCLHDGREVEARITKIVDSVVGRRVHIAFGAFALIVNEAQIIRTLDE*
Ga0070765_10122495523300006176SoilMKQITVGQTVLVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
Ga0070765_10149309013300006176SoilVKRKQIQVASTVLARLYDGREVVAKITAIVNGPAGQEVHIAFGVRIED*
Ga0070765_10225956513300006176SoilVKKKQIDIGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0073928_10006161123300006893Iron-Sulfur Acid SpringMRKQIQVGSTVVVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLLALKIDPEQIIREVR*
Ga0073928_1014779723300006893Iron-Sulfur Acid SpringMKQLREQIQIGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIAFGAFALIVEETQIIKEMR*
Ga0137360_1017997133300012361Vadose Zone SoilVPKQVQVGSAVLVRLHDDREVEAKVTKIADSVAGRKVHIAFGAFALIVDETQIIKEMR*
Ga0137358_1005499633300012582Vadose Zone SoilVSKQIQVGSTAIVRLHDGREVEAKITKIVDSVAGRKVHIQFGAFALIVEEAQIIKAIC*
Ga0137358_1046814613300012582Vadose Zone SoilMRKQIQVGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
Ga0137395_1108518423300012917Vadose Zone SoilMPTKQITIGSTVLVRLYDGREVKAKVTTIVDSVLGRKVHISYGVIALKVDATQIVRTVQ*
Ga0182018_1000041973300014489PalsaVRKQIQVGSTVVVAKVTQIVDRVAGRKAHIRFGAVTLILEETQIVKAVA*
Ga0182018_1000054843300014489PalsaMREQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHITYGLIALKIDPEQIIREVR*
Ga0182018_10004395213300014489PalsaMRKQIQVGSTVVARLYDGREVEAKITAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR*
Ga0182018_1000996153300014489PalsaMRKQIRVGSTVVVRLYDGREVEAKVTAIVNGPAGQKVHIAFGAFALKIDPEQIIREVR*
Ga0182018_1020618023300014489PalsaVKRKQIQVGSTVLARLYDGREVVAKITAIVNGPAGQKVHIAFGAFAVKIDPQQVIKVLP*
Ga0182015_1004881363300014495PalsaMRKQIKVGSTVVARLYDGREVEAKVTAIMDSVAGRKVCIAYGFIALKIDPEQIIREVR*
Ga0182024_10009783153300014501PermafrostMRKQIQVGSTVVVRLYDGREVEAKITAIVDSVAGRKVHIACGLIALKIDPEQIIREVRC*
Ga0182024_1007979423300014501PermafrostVRKQIQVGSTVVVRLYDGREVEATITKIVDSVVGRKVHITYGLKTLKIDPEQIIREVRC*
Ga0182024_1010358453300014501PermafrostVRRQIQVGSTILARLHDERSVEAKITKIVDSVAGQRVHITFGASELKVDEKQIISEVRA*
Ga0182024_1012837123300014501PermafrostMRKQIEVGSTAVVRLYDGREVEAKITAIVDSVAGRKVHITYGLIALKIDPEQVIREVR*
Ga0182024_1059068923300014501PermafrostVRKQIQVGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIACGLIALKIDPEQIIREVQ*
Ga0137412_1003111613300015242Vadose Zone SoilVPKQVQVGSAVLVRLHDDREVEAKVTKIADSVAGRKVHIAFGASALIVDETQIIKEMR*
Ga0210407_1131298023300020579SoilMPTKQITIGSTVLVRLYDGREVEAKVTAIVDSVLGRKVHISYGVIVLKVDATQIVRTVQ
Ga0210399_1061168913300020581SoilVKSQITVGSTVLVRLHDGRKVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQIIREVKIQ
Ga0210395_1009839223300020582SoilVRKQIQVGSTVVARLHDGRVVVAKVTQIVNSVAGRKAHIRFGAVALIVEVTQIVKAVT
Ga0210401_10013782123300020583SoilMGGKEESKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210401_1002398373300020583SoilVRKQVQVGSTVLVRLYDGREVEAKVTAIVNGPAGQKIHIATGPYALKIDPAQIIKEM
Ga0210401_1039939513300020583SoilVKKQIDVSSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALLVD
Ga0210401_1055431623300020583SoilVVKNIQVGSLDIVKLYDGRMVEAKVTAIVDSVIGRKVHVRFGPSALKVDASQIVI
Ga0210401_1066801423300020583SoilVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDAAQILKECKA
Ga0210401_1109035623300020583SoilMPKQIVVGSTVIVCLHDGREVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQIIREVKIQ
Ga0210401_1127757913300020583SoilKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKEGKA
Ga0210405_1027495023300021171SoilVKKQIDVGSTVTARLHDGRVVVAKVTAIVHSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210405_1078203233300021171SoilMGGKEESKVKKQIDVGSTVTARLHDGRVVVAKVTAIVDSVAGRKVHVTFGAFALIVDDTQIVRKCKT
Ga0210393_1064050623300021401SoilKKAMGGKEESKVKKKQIDVGSTVTARLHDGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210397_1018651933300021403SoilVRKQIQVGSTVVVRLYDGREVEAKIMAIVDSVAGRKIHITYGIIALKIDPEQIIKTVQG
Ga0210387_1141001513300021405SoilVPKQLQVGSTVLARLHDGREVEARVTRTEDSVAGRKVHTTFGPYAFKVEEKQKRLNRQSSNA
Ga0210386_1057008943300021406SoilSKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210383_1007574453300021407SoilMEESVSRDRRPLLILVGSTVTARLHNGRVVVARVTAIVDSVAGRKVHIQFGAFALIVEEMQIIKEMQ
Ga0210383_1014092543300021407SoilVGGKEESKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210394_1050570813300021420SoilIVVGSTVIVCLHDGREVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQIIREVKIQ
Ga0210384_1005685343300021432SoilMPKQIQVGSAVIACLHDGREVEAKVTKIVDSVVGRKVHIAFGAFALKVDETQIVRKGGTK
Ga0210384_1094338713300021432SoilVVVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIRKVRCLRNP
Ga0210391_1009440543300021433SoilVGRKEESKVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDAAQILKECKA
Ga0210391_1035378823300021433SoilMPTKQIILGSTVLVRLYDGREVIAKITAVVNGPAGQKVHITFGAFALKVDPAQIIKTVQHDTD
Ga0210391_1086909823300021433SoilVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0210390_1023924423300021474SoilVPKQLPVGSTVLARLHNGREVEAKITKIVDSVAGRKVHIAFGAFALIIDEVQAIREVRT
Ga0210390_1075799523300021474SoilVKKKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFALIVDATQILKECKA
Ga0210398_1061953033300021477SoilLEQLQVGSTVLVRLDDGREVEAKITKIVDTVAGRKVHIAFGVFALIVTETQIIRTREE
Ga0210409_1088761923300021559SoilMRKQIKVGSTVVARLYDGREVEAKVTAIVDSVAGRKVHIAYGIIALKIDPEQIIREVR
Ga0210409_1135164813300021559SoilVRKQIQVGSTVVVRLYDGREVEAKITKIIDSVAGRKVHIAFGVFALMVTE
Ga0212123_1002555843300022557Iron-Sulfur Acid SpringMRKQIQVGSTVVVRLYDGREVEAKVTRIVDSVAGRKVHIAYGLLALKIDPEQIIREVR
Ga0224544_103574723300023250SoilMREQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHITYGLIALKIDPEQIIREVR
Ga0224544_105209523300023250SoilMRKQIQVGSTVVARLYDGREVEAKITAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR
Ga0209171_1007806453300025320Iron-Sulfur Acid SpringMRKQIQIGSTVVARLYDGREVEAKVTRIVDSVAGRKVHIAFGAFALIVEETQIIKEMR
Ga0209863_1004687223300026281Prmafrost SoilVPKQIQVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR
Ga0209890_1021485413300026291SoilQVGSTVLVRLHDDREVEAKITKIVDSVAGRKVHIQFGAFALKVDETQILKAVR
Ga0257154_101577423300026467SoilVRKQIQVGSKAVVRLYDGREVDAQITAIVNGPAGQKVRIAFGAFALKVDPQQIIRTIQ
Ga0208985_102201143300027528Forest SoilMRKQIQVGSTVVARLYDGREVEARITAIVDSVAGRKVHIAYGLIALKIDPERIIREVR
Ga0209329_100512223300027605Forest SoilMPKQILVGSTVLARLHDGREVEAKVTKIVDSVAGRKVHIQFGAFALKISAEQIIKSVR
Ga0209420_110406223300027648Forest SoilMRRQIQIGSTAVVRLYDGRELVAKITTIVNGPAGQKVHIAFGAFALKIDPKQVIKTVQV
Ga0209333_100924313300027676Forest SoilKIVRKQIQVGSTVVARLHDGRVVVAKVTQIVNSVAGRKAHIRFGAVALIVEVTQIVKAVT
Ga0209333_118951623300027676Forest SoilVRKQIQVGSTVVARLYDGREVEAKITAIVNGPAGQKVHIAFGAFALKIDPKQVI
Ga0209693_1022644233300027855SoilMPKQIVVGSTALVCLHDGREVEARITKIVDSVVGRRVHIAFGAFALIVNEAQIIRMLDE
Ga0209167_1036271833300027867Surface SoilVKKKQIDIGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQILKEGKA
Ga0209275_1031935423300027884SoilILVGSTVTARLHNGRVVVARVTAIVDSVAGRKVHIQFGAFALIVEEMQIIKEMQ
Ga0209275_1041743423300027884SoilVPKQIQVGSAVLVRLHDDREVEAKVTKIVDSVAGRRVHIAFGAFALIVNEAQVIRTLDE
Ga0209624_1085576213300027895Forest SoilLRKNIQVGSTVVVRLYDGREVEAKITKIIDSVAGRKVHIAFGVFALVVRETQIIRTR
Ga0209624_1093751213300027895Forest SoilVGRKEESKVKKKQIDVGSTVTAPLHNGRVVVAKVTVIIDSVAGQKVHITFGAFALIVDDTQIVKECKA
Ga0209006_1022138923300027908Forest SoilMPKQLQAGSTVLACLRDGREVEAKITKIVDSVAGRKVHIAFGAFALIIDEMKVIREGGHD
Ga0209526_1028712813300028047Forest SoilMTWLQYGEKQTLTDLTPLKQIQIGSTVVVRLYDDREVEAKVTRIVDSVAGRKVHIAYGLIALKIDPEQIIREVR
Ga0209526_1081930513300028047Forest SoilLTRLHDGREVEARATKIVDSVVGRKLHIAFGAFALIIDVVQIIRREVRP
Ga0308309_1071842713300028906SoilMRKQIQIGSTVVARLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIEPEQIIREVR
Ga0308309_1124281413300028906SoilVKRKQIQVASTVLARLYDGREVVAKITAIVNGPAGQEVHIAFGVRIED
Ga0222749_1055557823300029636SoilMPKQIVVGSTVIVCLHDGREVEAKVTKIVDSVAGRKVHIAFGVFALIVGGTQII
Ga0170834_10977706623300031057Forest SoilMGGKEESKVKKQIDVGSTVTARLHDGRVVVAKVTSVVDSVAGRKVHITFGAFALIVDATQILKECKA
Ga0170834_11002776123300031057Forest SoilMLASTVPARFDDGREVEAKVTKMVDSVLGRRARIAFGAFALIIDEVQIVREVRP
Ga0170834_11225661413300031057Forest SoilKQIDVGSTVTARLHNGRVVVAKVTAIVDSVAGRKVHITFGAFALIVDATQVLKECKA
Ga0170834_11243868013300031057Forest SoilMSTKQITIGSTVLVRLYDGREVEAKVTAIVDSVLGRKVHISYGVIALKVEATQIVRTVQRSNPS
Ga0170824_12305486613300031231Forest SoilVKKQIDVGSTVTARLHDGRVVVAKVTSVVDSVAGRKVHITFGAFALIVDATQVLKECKA
Ga0307476_1025059323300031715Hardwood Forest SoilMGGKEESKVKKQIDVGSTVTARLHDGRVVVAKVTSVVDSVAGRKVHITFGAFALIVDDTRIVRECKA
Ga0307469_1137456823300031720Hardwood Forest SoilMARRIAVGTAVTVRLHDGGEVEAKVTKIVDSDAGRKVQIAFGPQAFRVDETQIIEEMRGG
Ga0307479_1014816923300031962Hardwood Forest SoilMPTKQITIGSTVLVRLYDGREVEAKVTAIVDSVLGRKVHISYGVIALKVDATQIVRTVQ
Ga0307479_1027763153300031962Hardwood Forest SoilMPKQIQVGSTVIACLHDGREVEAKVTEIVDSVVGRKVHIAFGAFALIVKEAQIIRALED
Ga0307479_1143700613300031962Hardwood Forest SoilMRKQIQVGSTVVVRLYDGREVEAKVTAIVDSVAGRKVHIAYGLIALKIDPEQIIREVR


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