Metagenome Family F101753

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101753
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	46 residues
Representative Sequence	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAGSKPAM
Number of Associated Samples	88
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	99.02 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	97.06 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.961 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.392 % of family members)
Environment Ontology (ENVO)	Unclassified (47.059 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.118 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 34.72% β-sheet: 0.00% Coil/Unstructured: 65.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12706	Lactamase_B_2	1.96
PF01135	PCMT	0.98
PF08734	GYD	0.98
PF02371	Transposase_20	0.98
PF08281	Sigma70_r4_2	0.98
PF13185	GAF_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.98
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.98
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
All Organisms	root	All Organisms	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
cellular organisms	root	All Organisms → cellular organisms	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	27.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.45 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.98 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	27.45 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.98 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01B7FOU	Not Available	518	Open in IMG/M
2170459021\|G14TP7Y01CZV5W	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	768	Open in IMG/M
2228664021\|ICCgaii200_c0602915	Not Available	537	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100435892	Not Available	507	Open in IMG/M
3300000956\|JGI10216J12902_107458747	Not Available	507	Open in IMG/M
3300005148\|Ga0066819_1021865	Not Available	540	Open in IMG/M
3300005187\|Ga0066675_11295284	Not Available	537	Open in IMG/M
3300005332\|Ga0066388_104245774	Not Available	730	Open in IMG/M
3300005406\|Ga0070703_10202516	Not Available	780	Open in IMG/M
3300005439\|Ga0070711_101466379	Not Available	595	Open in IMG/M
3300005447\|Ga0066689_10997144	Not Available	515	Open in IMG/M
3300005536\|Ga0070697_100027477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4552	Open in IMG/M
3300005713\|Ga0066905_100023956	All Organisms → cellular organisms → Bacteria → Proteobacteria	3320	Open in IMG/M
3300005764\|Ga0066903_105835237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300005764\|Ga0066903_106175107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300006028\|Ga0070717_10957580	Not Available	779	Open in IMG/M
3300006028\|Ga0070717_10980740	Not Available	769	Open in IMG/M
3300006173\|Ga0070716_100444555	Not Available	943	Open in IMG/M
3300006175\|Ga0070712_100570102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	955	Open in IMG/M
3300006755\|Ga0079222_11612926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	616	Open in IMG/M
3300006845\|Ga0075421_100411634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1622	Open in IMG/M
3300006854\|Ga0075425_101837154	Not Available	680	Open in IMG/M
3300006871\|Ga0075434_101797034	Not Available	620	Open in IMG/M
3300007076\|Ga0075435_102048462	Not Available	503	Open in IMG/M
3300009143\|Ga0099792_11269153	Not Available	502	Open in IMG/M
3300009156\|Ga0111538_12063496	Not Available	717	Open in IMG/M
3300010038\|Ga0126315_10471477	Not Available	797	Open in IMG/M
3300010047\|Ga0126382_10532810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300010048\|Ga0126373_10442487	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300010362\|Ga0126377_12873982	Not Available	555	Open in IMG/M
3300012198\|Ga0137364_10908275	Not Available	666	Open in IMG/M
3300012198\|Ga0137364_11009743	Not Available	629	Open in IMG/M
3300012208\|Ga0137376_10578012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	973	Open in IMG/M
3300012208\|Ga0137376_10591696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	960	Open in IMG/M
3300012210\|Ga0137378_10852630	Not Available	824	Open in IMG/M
3300012349\|Ga0137387_11132831	Not Available	556	Open in IMG/M
3300012350\|Ga0137372_10926820	Not Available	615	Open in IMG/M
3300012357\|Ga0137384_10529313	Not Available	966	Open in IMG/M
3300012960\|Ga0164301_10553990	Not Available	840	Open in IMG/M
3300012977\|Ga0134087_10215551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300012989\|Ga0164305_10362179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1096	Open in IMG/M
3300016294\|Ga0182041_11334315	Not Available	657	Open in IMG/M
3300016341\|Ga0182035_10644054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	919	Open in IMG/M
3300016357\|Ga0182032_10387060	Not Available	1128	Open in IMG/M
3300016357\|Ga0182032_11424164	Not Available	600	Open in IMG/M
3300016371\|Ga0182034_10862638	Not Available	777	Open in IMG/M
3300016371\|Ga0182034_10954151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300016371\|Ga0182034_11866733	Not Available	530	Open in IMG/M
3300016404\|Ga0182037_11454079	Not Available	607	Open in IMG/M
3300016422\|Ga0182039_10948114	Not Available	770	Open in IMG/M
3300016422\|Ga0182039_11387147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300016445\|Ga0182038_10257903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1405	Open in IMG/M
3300016445\|Ga0182038_12167417	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300017657\|Ga0134074_1065489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1233	Open in IMG/M
3300018482\|Ga0066669_11057948	Not Available	733	Open in IMG/M
3300021168\|Ga0210406_10206130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1629	Open in IMG/M
3300025972\|Ga0207668_11552007	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300026121\|Ga0207683_11471756	Not Available	629	Open in IMG/M
3300026550\|Ga0209474_10678270	Not Available	532	Open in IMG/M
3300027874\|Ga0209465_10006088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5278	Open in IMG/M
3300027903\|Ga0209488_10440143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	961	Open in IMG/M
3300028793\|Ga0307299_10393104	Not Available	520	Open in IMG/M
3300028802\|Ga0307503_10797929	Not Available	539	Open in IMG/M
3300031446\|Ga0170820_15049352	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300031543\|Ga0318516_10081276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1810	Open in IMG/M
3300031544\|Ga0318534_10736613	Not Available	556	Open in IMG/M
3300031545\|Ga0318541_10524064	Not Available	663	Open in IMG/M
3300031549\|Ga0318571_10081549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1028	Open in IMG/M
3300031680\|Ga0318574_10247097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1031	Open in IMG/M
3300031682\|Ga0318560_10075661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1707	Open in IMG/M
3300031736\|Ga0318501_10271749	Not Available	900	Open in IMG/M
3300031763\|Ga0318537_10152107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300031768\|Ga0318509_10328180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	856	Open in IMG/M
3300031781\|Ga0318547_10618202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300031793\|Ga0318548_10463108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	620	Open in IMG/M
3300031797\|Ga0318550_10333921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300031859\|Ga0318527_10048266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1650	Open in IMG/M
3300031890\|Ga0306925_11426694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300031894\|Ga0318522_10082500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1176	Open in IMG/M
3300031896\|Ga0318551_10512330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300031897\|Ga0318520_10975844	Not Available	535	Open in IMG/M
3300031910\|Ga0306923_12395667	Not Available	523	Open in IMG/M
3300031912\|Ga0306921_10380679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1648	Open in IMG/M
3300031912\|Ga0306921_11491445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300031912\|Ga0306921_12149625	Not Available	590	Open in IMG/M
3300031941\|Ga0310912_10221875	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300031942\|Ga0310916_11627211	Not Available	524	Open in IMG/M
3300031947\|Ga0310909_11076335	Not Available	654	Open in IMG/M
3300031959\|Ga0318530_10058173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1471	Open in IMG/M
3300031959\|Ga0318530_10095729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1175	Open in IMG/M
3300032001\|Ga0306922_12156001	Not Available	538	Open in IMG/M
3300032025\|Ga0318507_10076810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1363	Open in IMG/M
3300032039\|Ga0318559_10578515	Not Available	524	Open in IMG/M
3300032043\|Ga0318556_10559696	Not Available	597	Open in IMG/M
3300032059\|Ga0318533_10286448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1193	Open in IMG/M
3300032060\|Ga0318505_10247780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	838	Open in IMG/M
3300032060\|Ga0318505_10466899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300032060\|Ga0318505_10565292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300032066\|Ga0318514_10533648	Not Available	625	Open in IMG/M
3300032090\|Ga0318518_10655591	Not Available	534	Open in IMG/M
3300032180\|Ga0307471_100472679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1397	Open in IMG/M
3300032205\|Ga0307472_102399011	Not Available	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.16%
Host-Associated	Host-Associated	6.86%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.16%
Plants	Host-Associated → Plants	6.86%
Solid Waste	Engineered → Solid Waste	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Grass	Engineered → Solid Waste → Grass	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.39%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_09601690	2170459005	Grass Soil	MINVCIRPRRAAVAAVSALAATTGKTSSDEILVEQIAAGSKPAMQ
4NP_03787490	2170459021	Switchgrass, Maize And Mischanthus Litter	MANVCIRPQPAVAGVVPALAVTAGETSSDEILVERIAAGNKLAMQAFFARHRTSVYRSFGSSA
ICCgaii200_06029151	2228664021	Soil	VIEGEPLMLNVSLRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKP
INPhiseqgaiiFebDRAFT_1004358922	3300000364	Soil	MIDVCIRSQPTVAGVPAIAAMAAETSSDEILVQRIAAGN
JGI10216J12902_1074587471	3300000956	Soil	MLNVSVRPQPAAVAAVSVLAAGEISSDEILVKQIAAGSKPAMQALFARHRT
Ga0066819_10218651	3300005148	Soil	MLNVSRRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRTYVYRW
Ga0066675_112952842	3300005187	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAGSKPA
Ga0066388_1042457742	3300005332	Tropical Forest Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAGSKPAMQALFARHRTYV
Ga0070703_102025161	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVSVRPQPAAVAAVSALAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRTYVYRW
Ga0070711_1014663791	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVSVRPQPAAVAAVSVLAAGEISSDEILVKQIAAGSKPAMQALFARHR
Ga0066689_109971441	3300005447	Soil	MLNVSVRPQPAVVAAVSALAATAGKTSSDEILVEQIAAGSKPAMQA
Ga0070697_1000274776	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVSIRPQPAAIAALSALAGTAGETSSDEFLLEQIAAGGKPAMQALFARHRTYVY
Ga0066905_1000239567	3300005713	Tropical Forest Soil	MLNTSVRPQPAAVAAVSALGATAGKTSSDEILVEQIAAGSKPAMQALFA*
Ga0066903_1058352371	3300005764	Tropical Forest Soil	MLNVSVRPQVTAAAVSALAATAGEMSSDQFLVEQIAAGSRPAMQALFARHRTY
Ga0066903_1061751071	3300005764	Tropical Forest Soil	MLNVSLRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKPA
Ga0070717_109575802	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVSVRPQPAAVAAVSALAATAGKTSSDGILVEQIAAG
Ga0070717_109807402	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVSVRPRPADVTVVSALAATAGETSSDEMLVQQ
Ga0070716_1004445552	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLNVCIRPQPAVAGVPAIAATAGETSSDEILVERIAAG
Ga0070712_1005701022	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPNVSVRPQPAAVRELSAFAGCAGKSSSDEILIGEIAAGSKPAM
Ga0079222_116129261	3300006755	Agricultural Soil	MPNVSVRPQPAAVDEVSAFAPAAGESSSDEILIGEIAAGSKPAMHALFARHRT
Ga0075421_1004116345	3300006845	Populus Rhizosphere	MLNASVRPQPTAVAAVSALAATAGKTSSDEILVEQIAAGSKPAMQA
Ga0075425_1018371542	3300006854	Populus Rhizosphere	MLNLSVRPQPAAVAAVSALAATAGKTSSDQVLVEQIAAGSKPAMQVLF
Ga0075434_1017970342	3300006871	Populus Rhizosphere	VIEGEPLMLNLSVRPPPAAVAAASAPAATAGKTSSDEILVEQ
Ga0075435_1020484622	3300007076	Populus Rhizosphere	MLNVSVRPQPAAVAAVSALAGTSGETSSDEFLVEQIA
Ga0099792_112691531	3300009143	Vadose Zone Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAGSKPAMQALFV
Ga0111538_120634961	3300009156	Populus Rhizosphere	VIEGFSMLNVCIRPQPAGAGVPAIAATAGETSSDEILVERIAAG
Ga0126315_104714771	3300010038	Serpentine Soil	MLNASVRPQPTAVAAVSALAATAGKTSSDEILVGQIAAGSKPA
Ga0126382_105328102	3300010047	Tropical Forest Soil	MLNVSVRPHPAAVAAVSALAAAAGKTSSDEILVEQIAAGSKP
Ga0126373_104424874	3300010048	Tropical Forest Soil	MLNTSVRPQPAAVAAVSSLGATAGKTSSDEILVEQIAAGSKPAMQALFA*
Ga0126377_128739822	3300010362	Tropical Forest Soil	MLNASLRPQPAAIAAVSALAGTSGEISSDECLVEQIAA
Ga0137364_109082751	3300012198	Vadose Zone Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAG
Ga0137364_110097431	3300012198	Vadose Zone Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAA
Ga0137376_105780123	3300012208	Vadose Zone Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILIEQIAAG
Ga0137376_105916962	3300012208	Vadose Zone Soil	MINVCFRPQPAVAGVPAIAGTAAETSSDEILVERIAA
Ga0137378_108526301	3300012210	Vadose Zone Soil	MLNVSVRPQPAAVAAMSALAATAGETSSDEILVEQIAAGSKPAM
Ga0137387_111328311	3300012349	Vadose Zone Soil	MLNLSVRSQPAAVAAVSALAATARKTSSDEILVEQIAAGSKPAMQALFARH
Ga0137372_109268202	3300012350	Vadose Zone Soil	MLNVSVRPRPAAVAAVSALAATAGKTSSDEILVEQIAAGSK
Ga0137384_105293131	3300012357	Vadose Zone Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAGSKPAM
Ga0164301_105539902	3300012960	Soil	MLYVCIRPRRAAVAAVSALAATTGKTSSDEILVEQIAAGSKPA
Ga0134087_102155512	3300012977	Grasslands Soil	MLNISIRPLPAAVAAVSALAGNAGETSSDEILIEQIAAGSKPAMQALF
Ga0164305_103621791	3300012989	Soil	MIEGGPHMLNVSVRPQPAGVAAVSVLAAGEISSDEILVKQ
Ga0182041_113343151	3300016294	Soil	MLNASLRPQPAAIAAVSALARTSGETSSDEFLVEQIAAGSKPAMQTLFARHRTYVYR
Ga0182035_106440542	3300016341	Soil	MLNMSVRPQPAAVAGRSALAATAGETSSDEILVEQIAAGSKSAMHALFARHRTYVY
Ga0182032_103870604	3300016357	Soil	MLNVSIRPQPAAVAAVSAIAATAGETSSDETLVERIAAGNKLAMQA
Ga0182032_114241642	3300016357	Soil	MLNVSLRPQPAAIAAVSAPAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRT
Ga0182034_108626382	3300016371	Soil	MLNMSVRPQPAAVAGMSALAATAGETSSDEILVEQIAAGSKSAMHA
Ga0182034_109541512	3300016371	Soil	MLNVSLRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRTYV
Ga0182034_118667331	3300016371	Soil	MLNVSIRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAG
Ga0182037_114540792	3300016404	Soil	MVNVSLRPQPAAIAAVSAPAGTSGQTSSDEFLVEQIAAGSKPAMQTLFARHRTYVYRW
Ga0182039_109481142	3300016422	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVQQIAAGSKPATQALFV
Ga0182039_113871471	3300016422	Soil	MLNMSVRPQLAAVAGMSALAATAGETSSDEILVEQIAAGSKSAMHALF
Ga0182038_102579034	3300016445	Soil	MLNMSVRPQPAAVAGRSALAATAGETSSDEILVEQIAAGSKSA
Ga0182038_121674171	3300016445	Soil	MLNVSIRPQPAVVAAVSAIAATAGETSSDETLVERIAAGNKLAMQALFARHRTSV
Ga0134074_10654891	3300017657	Grasslands Soil	MLNVSVRPQPAVVAAVSALAATGGKTSSDEILVEQIAAGS
Ga0066669_110579481	3300018482	Grasslands Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQI
Ga0210406_102061305	3300021168	Soil	MLNVSVRPQPAAVAAVSVLAAGEISSDEILVKQIAAGS
Ga0207668_115520072	3300025972	Switchgrass Rhizosphere	MLNLSVRPQPAAVAAVSVLAAGEISSDEMLVKQIAAGSLARHRTYVYRWLLRFVSNETLA
Ga0207683_114717562	3300026121	Miscanthus Rhizosphere	MFNVFSRPKSAVVTVPAVEATAGETSSDTILIERIAAGDK
Ga0209474_106782702	3300026550	Soil	MLNVSVRPQPAVVAAVSALAATGGKTSSDEILVEQIAAGSKP
Ga0209465_100060889	3300027874	Tropical Forest Soil	MLNTSVRPQPAAVAAVSSLGATAGKTSSDEILVEQIAAGSKPAMQALFA
Ga0209488_104401431	3300027903	Vadose Zone Soil	MLNVCIRPRRAAVAAVSALAATTGKTSSDEILVEQIAAGSRPAMQALFA
Ga0307299_103931042	3300028793	Soil	MLNVFSRPKSAVVTVPAVEATAGETSSDTILIERIGAGD
Ga0307503_107979291	3300028802	Soil	MLNVFVRPQPAAGAAVSAPAATAGKTSSDEILVEQIAAGSKP
Ga0170820_150493521	3300031446	Forest Soil	MRNVCIRPRRAAVAAVSALAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRTYVYRWLL
Ga0318516_100812764	3300031543	Soil	MLNVSIRPQPAAVAAVSALAATGGEISSDENLVRQIAVGNKPAMQALFARHRTY
Ga0318534_107366132	3300031544	Soil	MLNVSVRPQPAAVAAVSALAATAEETSSDESLVEQIAAGSKPAM
Ga0318541_105240641	3300031545	Soil	MLNVSIRPQPAVVAAVSAIAATAGETSSDETLVERIAAGNKLAMKA
Ga0318571_100815491	3300031549	Soil	MLNVSVRPQPAAVAAVSALAAIAGKTSSDEILVEQIAAGSKPAMQALFARH
Ga0318574_102470971	3300031680	Soil	MLNMSVRPQPAAVAGMSALAATAGETSSDEILVEQIAAGSKSAMHALFARHRTYVY
Ga0318560_100756611	3300031682	Soil	MLNVSLRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKPAMQ
Ga0318501_102717491	3300031736	Soil	MLNVSIRPQPAAVAAVSALAATAGETSSDETLVERIAAGNK
Ga0318537_101521071	3300031763	Soil	MLNVSIRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKPAMQTL
Ga0318509_103281801	3300031768	Soil	MLNMSVRPQPAAVAGRSALAATAGETSSDEILVEQIAAGSKSAMHALFARHR
Ga0318547_106182021	3300031781	Soil	MLNVSLRPQPTAIAGVSALAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRT
Ga0318548_104631082	3300031793	Soil	MLNVSLRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSK
Ga0318550_103339211	3300031797	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAGSKPAMQALFVR
Ga0318527_100482664	3300031859	Soil	MLNVSVRPQPAAVAAVSALAAIAGKTSSDEILVEQIAAGSKPAMQAL
Ga0306925_114266941	3300031890	Soil	MLNASLRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKP
Ga0318522_100825001	3300031894	Soil	MLNASLRPQPAAIAAVSALAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRTYVY
Ga0318551_105123301	3300031896	Soil	MLNMSVRPQPAAVAGMSALAATAGETSSDEILVEQIAAGSKSAMHRTY
Ga0318520_109758441	3300031897	Soil	MLNVSIRPQPAVVATVSAIAATAGETSSDEILVERIA
Ga0306923_123956671	3300031910	Soil	MLNMSVRPQPAAVAGRSALAATAGETSSDEILVEQIAAGSKS
Ga0306921_103806794	3300031912	Soil	MLNVSIRPQPAAVAAVSALAATAGETSSDETLVERIAAGNKLAMQALFARH
Ga0306921_114914451	3300031912	Soil	MLNVSLRPQPAAIAVVSALAGTSGETSSDEFLVEQIAAGSKPAMQTLFARHRTYVYR
Ga0306921_121496251	3300031912	Soil	MLNVSVRPQPAAVAAVSALAATIGETSSDENLVKQIAVGSKPAMQALFARHRTYV
Ga0310912_102218751	3300031941	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVQQI
Ga0310916_116272111	3300031942	Soil	MLNVSIRPQPAVVATVSAIAATAGETSSDEILVERIAAGNKLAMQAL
Ga0310909_110763352	3300031947	Soil	MLNVSVRPQPAAVAAVSALAATIGETSSDENLVKQIAVGSKPAMQALFARHRTYVYR
Ga0318530_100581731	3300031959	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILIEQIAAGSKPAMQALFARHR
Ga0318530_100957291	3300031959	Soil	MLNMSVRPQPAAVAGMSALAATAGETSSDEILVEQ
Ga0306922_121560011	3300032001	Soil	MLNMSVRPQPAAVAGMSALAATAGETSSDEILVEQIAAGSKSAMHAL
Ga0318507_100768104	3300032025	Soil	MLNVSVRPQPAAVAAVSALAAIAGKTSSDEILVEQIAAGSKPAMQALFA
Ga0318559_105785151	3300032039	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQIAAGSKPAMQALFVRHRTY
Ga0318556_105596961	3300032043	Soil	MLNMSVRPQPAAVAGMSALAATAGETSSDEILVEQIAAGS
Ga0318533_102864481	3300032059	Soil	MLNVSVRPQPAAVAAVSALAAIAGKTSSDEILVEQIAAGSKPAMQALF
Ga0318505_102477802	3300032060	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSPDEILVEQ
Ga0318505_104668991	3300032060	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVEQ
Ga0318505_105652921	3300032060	Soil	MLNVSVRPQPAAVAAVSALAATAGKTSSDEILVQQIAAGSKPAMQALFVR
Ga0318514_105336482	3300032066	Soil	MLNVSIRPQPAAVAAVSAIAATAGETSSDETLVERIAAGNKLAMQALF
Ga0318518_106555911	3300032090	Soil	MLNMSVRPQPAAVAGMSALAATGETSSDEILVEQIAAGSKSAMHALFARHRTY
Ga0307471_1004726792	3300032180	Hardwood Forest Soil	MLNVSVRPQAAAVVVVSALAATAGEASSDEILVEQ
Ga0307472_1023990112	3300032205	Hardwood Forest Soil	MLNVSVRPQPAAVAAVFALAATAGKTSSDETLIEQIVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101753

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences