Metagenome / Metatranscriptome Family F101776

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101776
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	47 residues
Representative Sequence	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSR
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	19.39 %
% of genes near scaffold ends (potentially truncated)	95.10 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.961 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.529 % of family members)
Environment Ontology (ENVO)	Unclassified (24.510 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.47% β-sheet: 0.00% Coil/Unstructured: 57.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08376	NIT	25.49
PF04286	DUF445	5.88
PF07690	MFS_1	1.96
PF00155	Aminotran_1_2	1.96
PF12852	Cupin_6	0.98
PF12833	HTH_18	0.98
PF05973	Gp49	0.98
PF13577	SnoaL_4	0.98
PF04389	Peptidase_M28	0.98
PF11288	DUF3089	0.98
PF00005	ABC_tran	0.98
PF00440	TetR_N	0.98
PF11716	MDMPI_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2733	Uncharacterized membrane-anchored protein YjiN, DUF445 family	Function unknown [S]	5.88
COG4399	Uncharacterized membrane protein YheB, UPF0754 family	Function unknown [S]	5.88
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.98
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	47.06 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	41.18 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	24.51 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.96 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	16.67 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	5.88 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.96 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1.96 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.98 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	16.67 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	5.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.96 %
Sphingomonas phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.98 %
Kutzneria	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria	0.98 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.98 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	16.67 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	5.88 %
Sphingomonas phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.98 %
unclassified Kutzneria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria	0.98 %
Streptomyces nodosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces nodosus	0.98 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.98 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.98 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	16.67 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	5.88 %
Sphingomonas phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Kutzneria sp. 744	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria → Kutzneria sp. 744	0.98 %
Streptomyces sp. OK228	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. OK228	0.98 %
Streptomyces nodosus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces nodosus	0.98 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.98 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.98 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005331\|Ga0070670_101671422	Not Available	586	Open in IMG/M
3300005339\|Ga0070660_100731183	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300005341\|Ga0070691_10116793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1339	Open in IMG/M
3300005343\|Ga0070687_100263082	Not Available	1077	Open in IMG/M
3300005434\|Ga0070709_10131793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1707	Open in IMG/M
3300005435\|Ga0070714_101012512	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300005435\|Ga0070714_102072282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	554	Open in IMG/M
3300005436\|Ga0070713_100803893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	901	Open in IMG/M
3300005436\|Ga0070713_101175032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300005437\|Ga0070710_10227943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1188	Open in IMG/M
3300005437\|Ga0070710_10711811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	710	Open in IMG/M
3300005526\|Ga0073909_10474023	Not Available	602	Open in IMG/M
3300005560\|Ga0066670_10699179	Not Available	614	Open in IMG/M
3300005587\|Ga0066654_10045051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1921	Open in IMG/M
3300005952\|Ga0080026_10045891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1134	Open in IMG/M
3300006028\|Ga0070717_10009070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	7469	Open in IMG/M
3300006028\|Ga0070717_10573923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300006028\|Ga0070717_12047513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas phyllosphaerae	515	Open in IMG/M
3300006028\|Ga0070717_12099252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	508	Open in IMG/M
3300006173\|Ga0070716_100043436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2513	Open in IMG/M
3300006173\|Ga0070716_100619468	Not Available	816	Open in IMG/M
3300006175\|Ga0070712_100839973	Not Available	789	Open in IMG/M
3300006755\|Ga0079222_10079009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1651	Open in IMG/M
3300006791\|Ga0066653_10269416	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300006806\|Ga0079220_10269596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1031	Open in IMG/M
3300006954\|Ga0079219_10233797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1076	Open in IMG/M
3300007788\|Ga0099795_10318322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	688	Open in IMG/M
3300009093\|Ga0105240_12761864	Not Available	505	Open in IMG/M
3300009098\|Ga0105245_10768081	Not Available	1000	Open in IMG/M
3300009098\|Ga0105245_11336712	Not Available	766	Open in IMG/M
3300009137\|Ga0066709_102926873	Not Available	629	Open in IMG/M
3300010359\|Ga0126376_11942418	Not Available	629	Open in IMG/M
3300010360\|Ga0126372_10748239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	961	Open in IMG/M
3300010373\|Ga0134128_12841936	Not Available	533	Open in IMG/M
3300010396\|Ga0134126_12833951	Not Available	525	Open in IMG/M
3300010396\|Ga0134126_13030832	Not Available	507	Open in IMG/M
3300012202\|Ga0137363_10746003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	829	Open in IMG/M
3300012210\|Ga0137378_10586288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1024	Open in IMG/M
3300012211\|Ga0137377_10682627	Not Available	962	Open in IMG/M
3300012285\|Ga0137370_10171201	Not Available	1264	Open in IMG/M
3300012356\|Ga0137371_11013920	Not Available	629	Open in IMG/M
3300012361\|Ga0137360_11220663	Not Available	650	Open in IMG/M
3300012488\|Ga0157343_1018168	Not Available	613	Open in IMG/M
3300012515\|Ga0157338_1046408	Not Available	609	Open in IMG/M
3300012955\|Ga0164298_10567250	Not Available	773	Open in IMG/M
3300012960\|Ga0164301_11134487	Not Available	624	Open in IMG/M
3300012971\|Ga0126369_13668677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Kutzneria → unclassified Kutzneria → Kutzneria sp. 744	503	Open in IMG/M
3300013307\|Ga0157372_13370241	Not Available	509	Open in IMG/M
3300015241\|Ga0137418_10458065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1029	Open in IMG/M
3300015241\|Ga0137418_10681123	Not Available	792	Open in IMG/M
3300015373\|Ga0132257_100548372	Not Available	1423	Open in IMG/M
3300016294\|Ga0182041_10379205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1197	Open in IMG/M
3300016404\|Ga0182037_11719609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300016445\|Ga0182038_10931936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	766	Open in IMG/M
3300018482\|Ga0066669_10085119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2143	Open in IMG/M
3300018482\|Ga0066669_12222552	Not Available	521	Open in IMG/M
3300020082\|Ga0206353_10612705	Not Available	760	Open in IMG/M
3300020581\|Ga0210399_10135481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2030	Open in IMG/M
3300020581\|Ga0210399_10231476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1539	Open in IMG/M
3300020582\|Ga0210395_10996153	Not Available	621	Open in IMG/M
3300021088\|Ga0210404_10482966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	699	Open in IMG/M
3300021178\|Ga0210408_10484973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	983	Open in IMG/M
3300021180\|Ga0210396_11223578	Not Available	628	Open in IMG/M
3300021181\|Ga0210388_10124701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. OK228	2222	Open in IMG/M
3300021401\|Ga0210393_11155552	Not Available	624	Open in IMG/M
3300021404\|Ga0210389_10214975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1500	Open in IMG/M
3300021404\|Ga0210389_10607967	Not Available	859	Open in IMG/M
3300021478\|Ga0210402_10807246	Not Available	864	Open in IMG/M
3300021559\|Ga0210409_10506293	Not Available	1071	Open in IMG/M
3300024288\|Ga0179589_10116498	Not Available	1109	Open in IMG/M
3300024323\|Ga0247666_1083674	Not Available	635	Open in IMG/M
3300025898\|Ga0207692_10073770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1806	Open in IMG/M
3300025898\|Ga0207692_11044946	Not Available	540	Open in IMG/M
3300025905\|Ga0207685_10166866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1010	Open in IMG/M
3300025912\|Ga0207707_10921959	Not Available	721	Open in IMG/M
3300025916\|Ga0207663_10577799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	881	Open in IMG/M
3300025916\|Ga0207663_11332960	Not Available	578	Open in IMG/M
3300025928\|Ga0207700_10136453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2010	Open in IMG/M
3300025929\|Ga0207664_10162745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1904	Open in IMG/M
3300025936\|Ga0207670_10138809	Not Available	1790	Open in IMG/M
3300026116\|Ga0207674_10315380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1513	Open in IMG/M
3300026217\|Ga0209871_1038604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	900	Open in IMG/M
3300026507\|Ga0257165_1074260	Not Available	623	Open in IMG/M
3300027855\|Ga0209693_10454472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces nodosus	616	Open in IMG/M
3300028146\|Ga0247682_1058382	Not Available	699	Open in IMG/M
3300031779\|Ga0318566_10100963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1416	Open in IMG/M
3300031799\|Ga0318565_10007798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4285	Open in IMG/M
3300031820\|Ga0307473_10169000	Not Available	1266	Open in IMG/M
3300031823\|Ga0307478_11135039	Not Available	652	Open in IMG/M
3300031860\|Ga0318495_10370822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300031880\|Ga0318544_10162378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	859	Open in IMG/M
3300031894\|Ga0318522_10046413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1524	Open in IMG/M
3300031938\|Ga0308175_102066426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300032052\|Ga0318506_10058323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1577	Open in IMG/M
3300032054\|Ga0318570_10498274	Not Available	556	Open in IMG/M
3300032054\|Ga0318570_10507701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	550	Open in IMG/M
3300032059\|Ga0318533_10942209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300034820\|Ga0373959_0092721	Not Available	710	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.25%
Host-Associated	Host-Associated	12.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.25%
Plants	Host-Associated → Plants	12.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.80%
Loam	Environmental → Terrestrial → Soil → Loam	25.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	24.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	18.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070670_1016714222	3300005331	Switchgrass Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPA
Ga0070660_1007311831	3300005339	Corn Rhizosphere	MMWGMENKDVRSRASSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDP
Ga0070691_101167931	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETD
Ga0070687_1002630822	3300005343	Switchgrass Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTAL
Ga0070709_101317932	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSR
Ga0070714_1010125121	3300005435	Agricultural Soil	MMFGMENNDVRGRGGATRRAFLSASAATAVAVPLLSGTALAETDPALS
Ga0070714_1020722821	3300005435	Agricultural Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPALRAM
Ga0070713_1008038932	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MENKDVPGRAASTRRAFLSASAVTAVAAPLLSGTALAETD
Ga0070713_1011750321	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMFGMENNDVRGRGGATRRAFLSASAATAVAVPLLSGTALAETD
Ga0070710_102279431	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVPGRAGSTRRAFLSASAVTAVAAPLLSGTALAETD
Ga0070710_107118111	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVLGRAASTRRAFLSASAVTAVAAPFLSGTALAETDPALSRQVPDPALFAML
Ga0073909_104740233	3300005526	Surface Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTA
Ga0070732_102461621	3300005542	Surface Soil	MTNNDAPSRTGATRRAFLSASAVTAVAVPLLSGTAQAATDPALAPHEPDFELRAL
Ga0066670_106991791	3300005560	Soil	MIWGMENKDVLGRAGSTRRAFLSASAVTAVAAPLLSGTALAET
Ga0066654_100450511	3300005587	Soil	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALS
Ga0080026_100458911	3300005952	Permafrost Soil	LGQSMTNNDVPSRTGATRRTFLSASAVTALAVPLLSGAAQAATDPALAPQE
Ga0070717_100090701	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVLGRAASTRRAFLSASAVTAVAVPFLSGTALAETDPALSRQ
Ga0070717_105739231	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MMFGMENNDVRGRGGATRRAFLSASAATAVAVPLLSGTALAET
Ga0070717_120475131	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRASSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDP
Ga0070717_120992521	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MGMENKDVQARAGSTPLARRAFLSASAVTAVTAPLLTGTALAGTDPALTRQVPDP
Ga0070716_1000434362	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVPGRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQ
Ga0070716_1006194682	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPD
Ga0070712_1008399731	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MENKDVLGRGGSSRRAFLSASAVTAVAVPLLSGTALADTDPALSRQAPDPE
Ga0079222_100790091	3300006755	Agricultural Soil	MSSMIWGMENKDVLGRAASTRRAFLSASAVTAVAAPFLSGTALAETDPALSRQVPDPALFAMLREIDPARIRRRS*
Ga0066653_102694161	3300006791	Soil	MIWGMENKDVLGRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDP
Ga0079220_102695962	3300006806	Agricultural Soil	MENKDVPGRAASTRRAFLSASAVTAVAAPFLSGTALA
Ga0075434_1018515201	3300006871	Populus Rhizosphere	MMFGMENNDVRGRGGATRRAFLSASAVTAAAVPLLS
Ga0079219_102337972	3300006954	Agricultural Soil	MIWGMENKDVLGRAASTRRAFLSASAVTAVAAPFLSGTALAETDPALSRQ
Ga0075435_1015851201	3300007076	Populus Rhizosphere	MENKDVQRRSGSTRRTFLSASAATAVAAPIIAQSVT
Ga0099795_103183222	3300007788	Vadose Zone Soil	MENKDVQGRAGSTRRVFLSASAVTAVAAPFLSGTALAETDPALSRQA
Ga0105240_127618641	3300009093	Corn Rhizosphere	MENKDVLGRAASTRRAFLSASAVTAVAAPFLSGTALAETDPALSRQVPDPALF
Ga0105245_107680812	3300009098	Miscanthus Rhizosphere	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDP
Ga0105245_113367121	3300009098	Miscanthus Rhizosphere	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPALRAM
Ga0066709_1029268731	3300009137	Grasslands Soil	MENKDVLGRAGSTRRAFLTASAVTAVAAPLLSGTALAETDPALSRQVPDPAL
Ga0126376_119424181	3300010359	Tropical Forest Soil	MENKDVLGRAGATRRAFLSASAVTAVAVPLLSGTALAETDPALSR
Ga0126372_107482392	3300010360	Tropical Forest Soil	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSR
Ga0134128_128419362	3300010373	Terrestrial Soil	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAET
Ga0134126_128339511	3300010396	Terrestrial Soil	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPAL
Ga0134126_130308321	3300010396	Terrestrial Soil	MENKDVRSRASSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQA
Ga0137363_107460031	3300012202	Vadose Zone Soil	MTSMIWGMENKDVLGRAASTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPGL
Ga0137378_105862881	3300012210	Vadose Zone Soil	MENTLGGAGSTRRAFLSASAVTAVAVPLLTGTALAG
Ga0137377_106826271	3300012211	Vadose Zone Soil	MQNNDAQVGKGSSRRAFLTASAVTAVTAPLLTGTALAGTSPALVRQEPDEQLR
Ga0137370_101712011	3300012285	Vadose Zone Soil	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSVTALAETDPALSRQAPD
Ga0137371_110139201	3300012356	Vadose Zone Soil	MENKDVLGRAASTRRAFLSASAVTAVAAPFLSGTALAETDPALSRQVPDPAL
Ga0137360_112206632	3300012361	Vadose Zone Soil	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPGLR
Ga0157343_10181681	3300012488	Arabidopsis Rhizosphere	MENKDVRSRAGSTRRAFLSASAVTAVAVPLLSGTALAETDPALSRQAPDP
Ga0157338_10464081	3300012515	Arabidopsis Rhizosphere	MMWAMENKDVRSRASSTRRAFLSASAVTAVAAPLLSGTALAETDPALIRQAPDPAL
Ga0164298_105672502	3300012955	Soil	MENKDVRSRAGSTRRAFLSASAVTVVAAPLLSGTALAETDPALSRQAPDPALRAML
Ga0164301_111344871	3300012960	Soil	MENKDVPGRAGSTRRAFLSASAVTAVAAPLLSGTA
Ga0126369_136686771	3300012971	Tropical Forest Soil	MIRGMGNNQSAGRIGATRRAFLSASAVTAAAFPFLTG
Ga0157372_133702411	3300013307	Corn Rhizosphere	MENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDP
Ga0137418_104580651	3300015241	Vadose Zone Soil	MENKDVQGRAGSTRRVFLSASAVTAVAAPFLSGTALAETDPALSRQAPD
Ga0137418_106811231	3300015241	Vadose Zone Soil	MENKDVLGRAASTRRAFLSASAVTAVAAPFLSGTALAETDPA
Ga0132257_1005483722	3300015373	Arabidopsis Rhizosphere	MENKDVRSRAGSTRRAFLPASAVTAVAAPLLSGTALAETDPALSRQAPDPALRAML
Ga0182041_103792051	3300016294	Soil	MHMENKDVQSRAGSAHLARRTFLSASAVTAVVAPLVSGTALAGTAHAAIRQEPDPGLR
Ga0182037_117196092	3300016404	Soil	MENNDVRSRASSAPLARRAFLSASAVTAVAAPLFSGTA
Ga0182038_109319361	3300016445	Soil	MIRGMENNDVRSGVGSTPLARRTFLSASAVTAVTAPLLISGTALAGT
Ga0066669_100851192	3300018482	Grasslands Soil	MESKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPAL
Ga0066669_122225521	3300018482	Grasslands Soil	MENKDVPGRAASTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPD
Ga0206353_106127051	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDP
Ga0210399_101354814	3300020581	Soil	MENKDVQARAGSAPMARRKFLSASAVTAVAVPLISGTALTGTAD
Ga0210399_102314762	3300020581	Soil	MENKDVPGRAASTRRAFLSASAVTAVAAPLLSGTALAE
Ga0210395_109961532	3300020582	Soil	MENKDVPGRAASTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQ
Ga0210404_104829662	3300021088	Soil	MIWGMENKDVQGRGGSTRRAFLSASAVTAVAAPLLSGTALAETDP
Ga0210408_104849731	3300021178	Soil	MIWGMENKDVLGRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALS
Ga0210396_112235781	3300021180	Soil	MENNDVPGRAASTRRAFLSASAVTAVAAPLLSGTALAET
Ga0210388_101247013	3300021181	Soil	MENKDVPGRKGATRRVFLSASAVTAVAAPLLSGTA
Ga0210393_111555522	3300021401	Soil	MENNDVQGRTSSTSLGRRAFLSASAVTAVAAPLLISGPALA
Ga0210389_102149752	3300021404	Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAADP
Ga0210389_106079671	3300021404	Soil	MIWGMENKDVPGRAASTRRAFLSASAVTAVAAPLLSGTALAETDPALSR
Ga0210402_108072462	3300021478	Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLS
Ga0210409_105062932	3300021559	Soil	MPMIWGMENKDVPGRAASTRRAFLSASAVTAVAAPLLSGTALAE
Ga0179589_101164981	3300024288	Vadose Zone Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAVPLLSGTALAET
Ga0247666_10836741	3300024323	Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPALRAML
Ga0207692_100737702	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQ
Ga0207692_110449461	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPA
Ga0207685_101668661	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVPGRAGSTRRAFLSASAVTAVAAPLLSGTALAETDP
Ga0207707_109219591	3300025912	Corn Rhizosphere	MMWGMENKDVRSRASSTRRAFLSASAVTAVAAPLLSGTALAETDP
Ga0207663_105777992	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MMFGMENNDVRGRGGATRRAFLSASAATAVAVPLLSGTALAETDPALSRQAPDPALRAMLREIDP
Ga0207663_113329601	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVPGRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAADP
Ga0207700_101364532	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPAL
Ga0207664_101627452	3300025929	Agricultural Soil	MENKDVPARAASTRRAFLSASAVTAVAAPLLSGTALAETDPALSR
Ga0207670_101388092	3300025936	Switchgrass Rhizosphere	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPALRA
Ga0207674_103153801	3300026116	Corn Rhizosphere	MMFGMDNDVRGRGGATRRAFLSASAVTAVAAPLLSGTALA
Ga0209871_10386041	3300026217	Permafrost Soil	LGQSMTNNDVPSRTGATRRTFLSASAVTALAVPLLSGAAQA
Ga0257165_10742602	3300026507	Soil	MIWGMENKDVQGRAGSTRRVFLSASAVTAVAAPFLSGTALAETDPALSRQAPDP
Ga0209693_104544722	3300027855	Soil	MENKDVPGRKGATRRVFLSASAVTAVAAPLLSGTALAETDPALARPAPDDGLRAL
Ga0247682_10583821	3300028146	Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAP
Ga0318566_101009631	3300031779	Soil	MIRGMENNDVRSGVGSTPLARRTFLSASAVTAVTAPLLISGTALAGTA
Ga0318565_100077985	3300031799	Soil	MADNEVTGRAGSTRRAFLSASAVTAAAVPFLSGTAHA
Ga0307473_101690002	3300031820	Hardwood Forest Soil	MIWGMENKDVLGRAGSTRRAFLSASAVTAVAAPLLSGTALAETD
Ga0307478_111350392	3300031823	Hardwood Forest Soil	MADKDVSGKAASGRAGATRRAFLSASAVTAVTVPLLGGTAVA
Ga0318495_103708222	3300031860	Soil	MIRGMENNDVRSGVGSTPLARRTFLSASAVTAVTAPLLISGTA
Ga0318544_101623781	3300031880	Soil	MENKDVLGRNGATRRAFLSASAVTAVAVPLLSGTALAETDPALSRS
Ga0318522_100464131	3300031894	Soil	MADNEVTGRAGSTRRAFLSASAVTAAAVPFLSGTAHAASGS
Ga0308175_1020664262	3300031938	Soil	MMFGMENNDVRGRGGATRRAFLSASAVTAAAVPLLSGTALAETDPALSRQAPDPG
Ga0306922_102248221	3300032001	Soil	MENEDVQAQVGSDRIGRRRFLSASAVTAVAAPLITSTALADA
Ga0318506_100583232	3300032052	Soil	MENKDVLGRNGATRRAFLSASAVTAVAVPLLSGTALAETDPALSRSA
Ga0318570_104982742	3300032054	Soil	MENKDVQSRAGSAHLARRTFLSASAVTAVVAPLVSGTALAG
Ga0318570_105077011	3300032054	Soil	MIRGMENNDVRSGVGSTPLARRTFLSASAVTAVTAPLLISGTALAGTADE
Ga0318533_109422091	3300032059	Soil	MENNDVRSRASSAPLARRAFLSASAVTAVAAPLFS
Ga0373959_0092721_1_168	3300034820	Rhizosphere Soil	MIWGMENKDVRSRAGSTRRAFLSASAVTAVAAPLLSGTALAETDPALSRQAPDPAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101776

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences