 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F101809 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 102 |
| Average Sequence Length | 48 residues |
| Representative Sequence | MIAGHLGTRPGTVAKHVSDACADLKKALPELAIADDPGGDAAGGEEAP |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 102 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 55.88 % |
| % of genes near scaffold ends (potentially truncated) | 53.92 % |
| % of genes from short scaffolds (< 2000 bps) | 84.31 % |
| Associated GOLD sequencing projects | 89 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.38 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (86.275 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.725 % of family members) |
| Environment Ontology (ENVO) | Unclassified (40.196 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (51.961 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 32.89% β-sheet: 0.00% Coil/Unstructured: 67.11% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.38 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 102 Family Scaffolds |
|---|---|---|
| PF07729 | FCD | 1.96 |
| PF04199 | Cyclase | 1.96 |
| PF02913 | FAD-oxidase_C | 1.96 |
| PF13370 | Fer4_13 | 0.98 |
| PF00196 | GerE | 0.98 |
| PF06325 | PrmA | 0.98 |
| PF04545 | Sigma70_r4 | 0.98 |
| PF13193 | AMP-binding_C | 0.98 |
| PF08281 | Sigma70_r4_2 | 0.98 |
| PF00211 | Guanylate_cyc | 0.98 |
| PF00400 | WD40 | 0.98 |
| PF02518 | HATPase_c | 0.98 |
| PF01565 | FAD_binding_4 | 0.98 |
| PF09769 | ApoO | 0.98 |
| COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
|---|---|---|---|
| COG0277 | FAD/FMN-containing lactate dehydrogenase/glycolate oxidase | Energy production and conversion [C] | 1.96 |
| COG1802 | DNA-binding transcriptional regulator, GntR family | Transcription [K] | 1.96 |
| COG1878 | Kynurenine formamidase | Amino acid transport and metabolism [E] | 1.96 |
| COG2186 | DNA-binding transcriptional regulator, FadR family | Transcription [K] | 1.96 |
| COG2114 | Adenylate cyclase, class 3 | Signal transduction mechanisms [T] | 0.98 |
| COG2264 | Ribosomal protein L11 methylase PrmA | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG2890 | Methylase of polypeptide chain release factors | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG3897 | Protein N-terminal and lysine N-methylase, NNT1/EFM7 family | Posttranslational modification, protein turnover, chaperones [O] | 0.98 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 86.27 % |
| All Organisms | root | All Organisms | 13.73 % |
| Visualization |
|---|
| Powered by ApexCharts |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 13.73% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 10.78% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 10.78% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.90% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.92% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 3.92% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 3.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 3.92% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.94% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 2.94% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 2.94% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.96% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 1.96% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.96% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.96% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.96% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.96% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.96% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.98% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.98% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.98% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.98% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.98% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.98% |
| Rhizosphere Soil | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil | 0.98% |
| Simulated | Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated | 0.98% |
| Tropical Rainforest Soil | Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil | 0.98% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2166559005 | Simulated microbial communities from Lyon, France | Engineered | Open in IMG/M |
| 2170459010 | Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!) | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001431 | Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly | Environmental | Open in IMG/M |
| 3300005181 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Host-Associated | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Environmental | Open in IMG/M |
| 3300005363 | Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Environmental | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Environmental | Open in IMG/M |
| 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005557 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300006031 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100 | Environmental | Open in IMG/M |
| 3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
| 3300006572 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006578 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300006953 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010337 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
| 3300015245 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300015356 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300020082 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020140 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022533 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022724 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300027765 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes) | Environmental | Open in IMG/M |
| 3300027775 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027817 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028716 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198 | Environmental | Open in IMG/M |
| 3300028787 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381 | Environmental | Open in IMG/M |
| 3300028791 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144 | Environmental | Open in IMG/M |
| 3300031469 | Fir Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300034820 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 | Host-Associated | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| cont_0350.00003270 | 2166559005 | Simulated | RMDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAP |
| F62_01083170 | 2170459010 | Grass Soil | MDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAG |
| JGI10216J12902_1009971241 | 3300000956 | Soil | MIAEHLGTRPGTVAKHVSDACADLKKARPELAIADDPGGDAAGGEEAP* |
| JGI10216J12902_1018179971 | 3300000956 | Soil | VAKHVSDACADLKNALPDLAIVDDPDGDPAGGEEAR* |
| F14TB_1028281392 | 3300001431 | Soil | MIAGHLGTRPGTAAKHVSDACADLKKALPELAIADDLGRDAAGGEGAP* |
| Ga0066678_102791011 | 3300005181 | Soil | PGTLAQHVSDACADLKKALPESAIADDPGRDAAGGEEAP* |
| Ga0066388_1006481422 | 3300005332 | Tropical Forest Soil | MIAEHLATVPGTVAQHVSDACADLKKALPELTIADDPGGDAASGEEAP* |
| Ga0068869_1004576672 | 3300005334 | Miscanthus Rhizosphere | MIAGHLGTRQGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070682_1000476442 | 3300005337 | Corn Rhizosphere | MDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070691_102708791 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | MDEPDDRRVSGTRPGTVAKHVSDACADLKKALPGLAIVDDPDGDPAGGEEAR* |
| Ga0008090_154264111 | 3300005363 | Tropical Rainforest Soil | MIAEHLGTGPGTAAKHVFDARADSKKALPEWIIADDPGWDAAGGEEA |
| Ga0070673_1011357512 | 3300005364 | Switchgrass Rhizosphere | RAHRMDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070688_1008945411 | 3300005365 | Switchgrass Rhizosphere | SAQPDPPQSRDNPIRMDEPDDRRVSGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070709_115160921 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MIVGHLGTRPGRVAKHVSDACADLMKALPELAIADDPGGDAAGGEEAP* |
| Ga0070714_1001763433 | 3300005435 | Agricultural Soil | MTWRRAHRMDEPDDRRVSGTRPGTVAKHVSDTCADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0070714_1004131812 | 3300005435 | Agricultural Soil | MIVGHLGTRPGRVAKHVSDACADLKKALPELAIADDPGGRAAGGEEAP* |
| Ga0070714_1015626992 | 3300005435 | Agricultural Soil | MDEPDDRRVSGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEE |
| Ga0070714_1019275471 | 3300005435 | Agricultural Soil | MDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEE |
| Ga0070713_1017161751 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MDEPDDRRVSETRPGTVAKHVPDTCADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070710_112806281 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MIVGHLGTRPGRVAKHVSDACADLKKALPELAIADDPGGHAAGGEEAP* |
| Ga0070711_1017079471 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MDEPDDRRVSGTRPGTVAKHVSDTCADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070708_1000270262 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MMTEHLGTRPGTVTKHVSDACADLKKALPELAIADDPGGDTAGGEEAP* |
| Ga0070663_1000285254 | 3300005455 | Corn Rhizosphere | MIAGHLGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070681_103174361 | 3300005458 | Corn Rhizosphere | TRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070685_115125002 | 3300005466 | Switchgrass Rhizosphere | MDEPDDRRVSGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0070698_1019747852 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | KGWTNRMIAGHLGTRPGTVAKHVSDTCADLKKTLPELAIADDPGGDAAGGEEAP* |
| Ga0070697_1011810172 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LGTRPGTVAKHVSDACADLKKALPGLAIVDDPDGDPAGGEEAR* |
| Ga0066704_105312381 | 3300005557 | Soil | GTVAKHVSDACADLKKALPELAMADDPGGGAAGGEEAP* |
| Ga0068855_1001412772 | 3300005563 | Corn Rhizosphere | MDEPDDRRVSGTRPGTVAKHVSDACADLKKALPDLAIV |
| Ga0068870_106284311 | 3300005840 | Miscanthus Rhizosphere | VSGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0066651_101219412 | 3300006031 | Soil | VSGTRPGTVAKHVSDACADLKKALPGLAIVDDPDGDPAGGEEAR* |
| Ga0075018_101049481 | 3300006172 | Watersheds | GTVAKHVSDGCADLKKALPELATADDPGTDAAGGEEAL* |
| Ga0074051_117111873 | 3300006572 | Soil | MNRMIAKHLGTRPGTAAEHVSDSCADLKKALPELAIADDLGRDAAGGEEAP* |
| Ga0074056_118658202 | 3300006574 | Soil | MIAKHLGTRPGTAAEHASDSCADLKKALPELAIADDPGGEAAGGEEAP* |
| Ga0074059_120239192 | 3300006578 | Soil | HLGTRPGTAAEHASDSCADLKKALPELAIADDSGGEAAGGEEAP* |
| Ga0079221_100260954 | 3300006804 | Agricultural Soil | MIAEHPGNRPGTAAKHVSDARADLKRALPELAIADTRAGTAGGEEAS* |
| Ga0079220_105216301 | 3300006806 | Agricultural Soil | LSEVQKGWTNRMIAEHLGNRPGTAAKQVSGACADLKRAPPELAIADDPGGDAAGGEEAS* |
| Ga0075424_1014728661 | 3300006904 | Populus Rhizosphere | MIAGHLGTRPGTVAKHVSDACADLKKSLPDLAMADDPGGAAAGGRRHHGPE |
| Ga0075436_1011283571 | 3300006914 | Populus Rhizosphere | AKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0074063_139640531 | 3300006953 | Soil | TVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0134062_106706511 | 3300010337 | Grasslands Soil | MIAEHLGTRPGTVAKHVSDACADLRKALPELAIADDPDGDPAGGEEA |
| Ga0105239_109227791 | 3300010375 | Corn Rhizosphere | DRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR* |
| Ga0136449_1035712391 | 3300010379 | Peatlands Soil | NRMIAGHLGPRPGTVAKHVSGACADLDKALPELAIAGDPGGDAAGGEAP* |
| Ga0134126_102060482 | 3300010396 | Terrestrial Soil | MDEPDDRRVSGTRPGTVAKHVSDACADLKKALPGLAIVDDLDGDPAGGEEVR* |
| Ga0134126_117649191 | 3300010396 | Terrestrial Soil | EFDRARNRVRMDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDGPDGDPAGGEEAR* |
| Ga0137383_102202172 | 3300012199 | Vadose Zone Soil | MIAGHLGTRPGTVAKHVSDACADLKRALPELAMADDPGGGAAGWEEAP* |
| Ga0137383_104843192 | 3300012199 | Vadose Zone Soil | MIAEHLGTRPGTVAKHVSDAGANLKKALPELAIADDPGGDAAGGEEAS* |
| Ga0137363_101227883 | 3300012202 | Vadose Zone Soil | WTNRMIAGHLGTRPGTMAKHVSDACAELKKALPESAIANDPGGDAGGEEAP* |
| Ga0137380_109054861 | 3300012206 | Vadose Zone Soil | MIAGYLGTRPGTVAKHVSDACADLKKALPELAIADDPGGDAAGGEEAS* |
| Ga0137381_112683481 | 3300012207 | Vadose Zone Soil | MIAEHLGTRPGTVAKHVSDACADLKKALPELAIADDPGGDAAGGEEAS* |
| Ga0137377_109281812 | 3300012211 | Vadose Zone Soil | MIAGHLGTRPGTVAKHVSDACADLKKALPELAIADDPGGDAAGGEEAS* |
| Ga0137385_100916334 | 3300012359 | Vadose Zone Soil | HLGTRPGTVAKHVSDVCADLKRALPELAMADDPGGGAAGWEEAP* |
| Ga0137397_106486812 | 3300012685 | Vadose Zone Soil | MIAGHLGTRPGTMAKHVSDACAELKKALPESAIANDPGGDAGGEEAP* |
| Ga0137404_102478142 | 3300012929 | Vadose Zone Soil | MIAEHLGTRPGTVAKHVSDACADLKKALPELAIADDLGGDAAAGEEAP* |
| Ga0137407_100533715 | 3300012930 | Vadose Zone Soil | MIAEHLGTRPGTVAKHVSDACAELKKALPESAIANDPGGDAGGEEAP* |
| Ga0137410_106235821 | 3300012944 | Vadose Zone Soil | EGWTNRMIAGHLGTRPGTMAKHVSDACAELKKALPESAIANDPGGDAGGEEAP* |
| Ga0164298_101145012 | 3300012955 | Soil | MDEPDDRRVSGTRPGTVAKHVSDTCADLKKALPDLAIVDDPDGD |
| Ga0157376_125625462 | 3300014969 | Miscanthus Rhizosphere | MDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAG |
| Ga0137409_106891782 | 3300015245 | Vadose Zone Soil | MIAEHLGTRPGTAAKHVSDACADLKKALPDLAIADDPGGDAAGGEEAP* |
| Ga0134073_102307821 | 3300015356 | Grasslands Soil | MIAEHLGTRPGTVAKHVSDACADLKKALPGLAIVDDPDGDPAGGEEAR |
| Ga0132257_1019436842 | 3300015373 | Arabidopsis Rhizosphere | MIAKHLGTGPGTVAEHLFDARADSKKALPEWIIADDPGWDA |
| Ga0132255_1006949062 | 3300015374 | Arabidopsis Rhizosphere | IAEHLGNRPGTAAKHVSGACADLKKALPEPAIADDPGGDAAGGEEAS* |
| Ga0163161_110333242 | 3300017792 | Switchgrass Rhizosphere | RQGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0206353_110341861 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | RRVSGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0179590_10168192 | 3300020140 | Vadose Zone Soil | MIAGHLGTRPGTMAKHVSDACAELKKALPESAIANDPGGDAGGEEAP |
| Ga0210407_100356133 | 3300020579 | Soil | MDEPDDRRASGTRPGTVAKHVSDACADLKKTLPELAIADDPGGDATGGEEAP |
| Ga0210406_102840382 | 3300021168 | Soil | MDEPDDRRASGTRPGTVAKHVSDACADLKKTLPEQAIADDPGGDATGGEEAP |
| Ga0210396_102832162 | 3300021180 | Soil | MIVGHLGTRPGRVAKHVSDACADLKKALPELAIADDPGGDAAGGEEAP |
| Ga0210397_100287793 | 3300021403 | Soil | MDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0210384_103992602 | 3300021432 | Soil | MIAEHLGTRPGTVAKHVSDACADLKKALPELAIADDPGGNAAGGEEAP |
| Ga0210392_101599392 | 3300021475 | Soil | MDEPDDRRASGTRPGTVAKHVSDACADLSKTLPELAIADDPGGDATGGEEAP |
| Ga0210402_101281352 | 3300021478 | Soil | MIAGHLGTRPGTVAKHVSDACADLKKALPELAVADDPGGGAAGGEEAP |
| Ga0210402_112230841 | 3300021478 | Soil | MITGHLETRQGTVAKHVFDACADLKKALPELAVTDDPGGGAAGGEEAP |
| Ga0210409_111332661 | 3300021559 | Soil | MDEPDDRRASGTRPGTVAKHVSDACADLSKTLPELAIADDPGGDATGGE |
| Ga0242662_101910561 | 3300022533 | Soil | PGTVAKHVSDACADLKKTLPELAIADDPGGDATGGEEAP |
| Ga0242665_100484492 | 3300022724 | Soil | EPDDRWHLGTRPGTVAKHVSDACADLKKALPELAIADDQGGDTAGGEEAP |
| Ga0207699_101036031 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | DRRVSGTRPGTVATHVSGACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0207699_108802901 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLA |
| Ga0207643_100926851 | 3300025908 | Miscanthus Rhizosphere | DDRRVSGTRPGTVAKHVSDACADLKKALPGLAIVDDPDGDPAGGEEAR |
| Ga0207684_105494362 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MIAGHLGTRPGTVAKHVSDACADLKKALPELAIADDPGGDAAGGEEAP |
| Ga0207681_117453431 | 3300025923 | Switchgrass Rhizosphere | VSGTRPGTVAKHVSDACADLKKALPGLAIVDDPDGDPAGGEEAR |
| Ga0207694_101079983 | 3300025924 | Corn Rhizosphere | RAHRMGEPDDRRVSGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0207690_101514942 | 3300025932 | Corn Rhizosphere | VRMDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0207651_104762382 | 3300025960 | Switchgrass Rhizosphere | MIAGHLGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0207676_103513251 | 3300026095 | Switchgrass Rhizosphere | GTRPGTVATHVSGACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0179593_10475624 | 3300026555 | Vadose Zone Soil | FKGWTNRMIAGHLGTRPGTMAKHVSDACAELKKALPESAIANDPGGDAGGEEAP |
| Ga0209073_103748711 | 3300027765 | Agricultural Soil | SRLSEVQKGWTNRMIAEHPGNRPGTAAKHVSDARADLKRALPELAIADTRAGTAGGEEAS |
| Ga0209177_100760231 | 3300027775 | Agricultural Soil | IGRARAKQVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0209112_100638251 | 3300027817 | Forest Soil | EFDRARNRVRMDEPDDRRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0268266_102144382 | 3300028379 | Switchgrass Rhizosphere | MDEPDDRRVSGTRPGTVAKHVSDACADLKKALPDLAIVDDPDGD |
| Ga0307311_101155271 | 3300028716 | Soil | WTNRMIAGHLGTRPGTASKHVSDACADLKKTLPELAIADDPGRDAAGGEEAP |
| Ga0307323_101259751 | 3300028787 | Soil | MIAGHLGTGPGTAAKHVSDACADLKKALPELAIADDLGRDAAGGEEAP |
| Ga0307290_102762271 | 3300028791 | Soil | MIAGHLGTRPGTVAKHVSDACAGLKKALPELAVADDPGGDAA |
| Ga0170819_104925512 | 3300031469 | Forest Soil | TNRMIAGHLGTRPGTVAKRVSDACADSKKALPELAIADDPGGGAAGGEEAP |
| Ga0170818_1062821562 | 3300031474 | Forest Soil | RMIAGHLGIRPGTMAKHVSDACADLKMALPELATADDPGGAAAGGEEAP |
| Ga0307468_1004555971 | 3300031740 | Hardwood Forest Soil | MIAGHLGTRPGTVAKHVSDACADLKKALPELAIAGDPGGDAAGGEEAP |
| Ga0307473_102139382 | 3300031820 | Hardwood Forest Soil | MIAGHLGTRPGTVAKHVSDACADLKKALPELAIADDQGGDTAGGEEAP |
| Ga0307472_1011954421 | 3300032205 | Hardwood Forest Soil | RRVSETRPGTVAKHVSDACADLKKALPDLAIVDDPDGDPAGGEEAR |
| Ga0335085_100125039 | 3300032770 | Soil | MIAEHLGNRPGDGGRHVSDACADLKKALPWLAIADDPDGDPAGGEEAS |
| Ga0335079_100950663 | 3300032783 | Soil | MIAEHLGTGPGTAAKHVFDARADSKKALPEWIIADDPGWDAAGGEEAP |
| Ga0335076_106140741 | 3300032955 | Soil | RMIAEHLGTGPGTAAKHVFDARADSKKALPEWIIADDPGWDAAGGEEAP |
| Ga0373959_0217768_1_126 | 3300034820 | Rhizosphere Soil | MDEPDDRRVSGTRPGTVAKHVSDACADLKKALPGLAIVDDLD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |