NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101840

Metagenome / Metatranscriptome Family F101840

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101840
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 49 residues
Representative Sequence MATTYCSVADVSDFLRVPITATTTPNKTQVEKIINRKEEELDRRIGH
Number of Associated Samples 91
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 15.69 %
% of genes near scaffold ends (potentially truncated) 97.06 %
% of genes from short scaffolds (< 2000 bps) 85.29 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.275 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(31.372 % of family members)
Environment Ontology (ENVO) Unclassified
(87.255 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(73.529 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.00%    β-sheet: 0.00%    Coil/Unstructured: 64.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF06094GGACT 2.94
PF04896AmoC 0.98
PF00534Glycos_transf_1 0.98



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A86.27 %
All OrganismsrootAll Organisms13.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000158|SI54feb11_100mDRAFT_c1061146Not Available500Open in IMG/M
3300000173|LPfeb10P16500mDRAFT_c1009457Not Available954Open in IMG/M
3300000179|LPjun09P16500mDRAFT_c1050498Not Available539Open in IMG/M
3300000222|LPjun09P12500mDRAFT_1047956Not Available709Open in IMG/M
3300000248|LPfeb09P12500mDRAFT_1037522Not Available519Open in IMG/M
3300002231|KVRMV2_100104792Not Available8098Open in IMG/M
3300002242|KVWGV2_10391813Not Available742Open in IMG/M
3300003619|JGI26380J51729_10072353Not Available816Open in IMG/M
3300004110|Ga0008648_10197938Not Available546Open in IMG/M
3300005400|Ga0066867_10363422Not Available514Open in IMG/M
3300005429|Ga0066846_10244428Not Available590Open in IMG/M
3300005951|Ga0066379_10103099Not Available891Open in IMG/M
3300005969|Ga0066369_10302863Not Available511Open in IMG/M
3300006166|Ga0066836_10881787Not Available540Open in IMG/M
3300006308|Ga0068470_1557112All Organisms → cellular organisms → Archaea833Open in IMG/M
3300006310|Ga0068471_1141593Not Available3047Open in IMG/M
3300006324|Ga0068476_1103580Not Available584Open in IMG/M
3300006324|Ga0068476_1177852Not Available1345Open in IMG/M
3300006324|Ga0068476_1349399Not Available567Open in IMG/M
3300006325|Ga0068501_1184324Not Available1174Open in IMG/M
3300006327|Ga0068499_1048072Not Available6024Open in IMG/M
3300006335|Ga0068480_1047308Not Available595Open in IMG/M
3300006335|Ga0068480_1829799Not Available596Open in IMG/M
3300006336|Ga0068502_1077077Not Available577Open in IMG/M
3300006336|Ga0068502_1173586Not Available3485Open in IMG/M
3300006340|Ga0068503_10295869All Organisms → Viruses → Predicted Viral1179Open in IMG/M
3300006637|Ga0075461_10177796Not Available643Open in IMG/M
3300006751|Ga0098040_1092369Not Available915Open in IMG/M
3300006789|Ga0098054_1200632Not Available727Open in IMG/M
3300006789|Ga0098054_1257342Not Available629Open in IMG/M
3300006793|Ga0098055_1310902Not Available588Open in IMG/M
3300006793|Ga0098055_1390068Not Available516Open in IMG/M
3300006900|Ga0066376_10119638Not Available1626Open in IMG/M
3300006902|Ga0066372_10339439Not Available857Open in IMG/M
3300006916|Ga0070750_10232844Not Available805Open in IMG/M
3300006929|Ga0098036_1102886Not Available877Open in IMG/M
3300007514|Ga0105020_1053545All Organisms → Viruses → Predicted Viral3408Open in IMG/M
3300007758|Ga0105668_1211953Not Available694Open in IMG/M
3300007770|Ga0105015_1031925All Organisms → Viruses → Predicted Viral2600Open in IMG/M
3300008216|Ga0114898_1070551Not Available1080Open in IMG/M
3300008217|Ga0114899_1167452Not Available708Open in IMG/M
3300009173|Ga0114996_10419539Not Available1023Open in IMG/M
3300009376|Ga0118722_1181986Not Available1302Open in IMG/M
3300009705|Ga0115000_10932840Not Available530Open in IMG/M
3300010149|Ga0098049_1251477Not Available537Open in IMG/M
3300010150|Ga0098056_1011757All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium3196Open in IMG/M
3300013114|Ga0171650_1137996Not Available719Open in IMG/M
3300017775|Ga0181432_1075287Not Available980Open in IMG/M
3300020074|Ga0194113_11083796Not Available530Open in IMG/M
3300020084|Ga0194110_10520353Not Available772Open in IMG/M
3300020222|Ga0194125_10354176Not Available947Open in IMG/M
3300020332|Ga0211502_1063066Not Available710Open in IMG/M
3300020407|Ga0211575_10377259Not Available587Open in IMG/M
3300020444|Ga0211578_10400577Not Available572Open in IMG/M
3300020476|Ga0211715_10603695Not Available538Open in IMG/M
3300021087|Ga0206683_10336398Not Available765Open in IMG/M
3300021978|Ga0232646_1216622Not Available648Open in IMG/M
3300022068|Ga0212021_1050152Not Available845Open in IMG/M
3300022176|Ga0212031_1079278Not Available559Open in IMG/M
3300022183|Ga0196891_1065056Not Available653Open in IMG/M
(restricted) 3300022933|Ga0233427_10036975All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2735Open in IMG/M
(restricted) 3300023208|Ga0233424_10384989Not Available529Open in IMG/M
3300025039|Ga0207878_114115Not Available917Open in IMG/M
3300025084|Ga0208298_1021077Not Available1444Open in IMG/M
3300025108|Ga0208793_1036591Not Available1593Open in IMG/M
3300025110|Ga0208158_1093946Not Available707Open in IMG/M
3300025112|Ga0209349_1112525Not Available765Open in IMG/M
3300025125|Ga0209644_1118185Not Available630Open in IMG/M
3300025128|Ga0208919_1016563All Organisms → Viruses → Predicted Viral2841Open in IMG/M
3300025247|Ga0207880_1067133Not Available508Open in IMG/M
3300025267|Ga0208179_1096231Not Available590Open in IMG/M
3300025688|Ga0209140_1151193Not Available678Open in IMG/M
3300025889|Ga0208644_1082686All Organisms → Viruses → Predicted Viral1638Open in IMG/M
3300026213|Ga0208131_1172919Not Available502Open in IMG/M
3300026253|Ga0208879_1165459Not Available883Open in IMG/M
3300026253|Ga0208879_1369428Not Available503Open in IMG/M
3300026321|Ga0208764_10560995Not Available516Open in IMG/M
3300027779|Ga0209709_10068525All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium1966Open in IMG/M
3300027801|Ga0209091_10014909All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium5212Open in IMG/M
3300028039|Ga0256380_1003535All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon2245Open in IMG/M
3300028192|Ga0257107_1147738Not Available687Open in IMG/M
3300028192|Ga0257107_1194101Not Available580Open in IMG/M
3300028488|Ga0257113_1008764Not Available3427Open in IMG/M
3300028535|Ga0257111_1225515Not Available550Open in IMG/M
3300031627|Ga0302118_10283932Not Available769Open in IMG/M
3300031675|Ga0302122_10332740Not Available526Open in IMG/M
3300031703|Ga0308002_1135153Not Available518Open in IMG/M
3300031800|Ga0310122_10020392All Organisms → Viruses → Predicted Viral3862Open in IMG/M
3300031801|Ga0310121_10563860Not Available622Open in IMG/M
3300031803|Ga0310120_10278588Not Available888Open in IMG/M
3300031811|Ga0310125_10607186Not Available510Open in IMG/M
3300032006|Ga0310344_10003495All Organisms → cellular organisms → Bacteria11683Open in IMG/M
3300032032|Ga0315327_10546510Not Available717Open in IMG/M
3300032048|Ga0315329_10548264Not Available615Open in IMG/M
3300032088|Ga0315321_10201082Not Available1309Open in IMG/M
3300032278|Ga0310345_10893257Not Available866Open in IMG/M
3300032360|Ga0315334_10034721All Organisms → Viruses → Predicted Viral3555Open in IMG/M
3300032360|Ga0315334_11885464Not Available506Open in IMG/M
3300032820|Ga0310342_102089815Not Available677Open in IMG/M
3300032820|Ga0310342_102642279Not Available600Open in IMG/M
3300032820|Ga0310342_103622269Not Available509Open in IMG/M
3300034695|Ga0372840_248939Not Available525Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine31.37%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine12.75%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine7.84%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater5.88%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.88%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater5.88%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean3.92%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine3.92%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine3.92%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.92%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.94%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine2.94%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.98%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater0.98%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.98%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.98%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids0.98%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000158Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 100mEnvironmentalOpen in IMG/M
3300000173Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 500mEnvironmentalOpen in IMG/M
3300000179Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P16 500mEnvironmentalOpen in IMG/M
3300000222Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500mEnvironmentalOpen in IMG/M
3300000248Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P12 500mEnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002242Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey matEnvironmentalOpen in IMG/M
3300003619Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNAEnvironmentalOpen in IMG/M
3300004110Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNAEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005429Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76EnvironmentalOpen in IMG/M
3300005951Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300005969Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_AEnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006308Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500mEnvironmentalOpen in IMG/M
3300006310Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500mEnvironmentalOpen in IMG/M
3300006324Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500mEnvironmentalOpen in IMG/M
3300006325Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500mEnvironmentalOpen in IMG/M
3300006327Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125mEnvironmentalOpen in IMG/M
3300006335Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500mEnvironmentalOpen in IMG/M
3300006336Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500mEnvironmentalOpen in IMG/M
3300006340Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770mEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007514Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300007770Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300008216Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_GeostarEnvironmentalOpen in IMG/M
3300008217Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009376Combined Assembly of Gp0137079, Gp0137080EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300013114Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300020074Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200mEnvironmentalOpen in IMG/M
3300020084Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200mEnvironmentalOpen in IMG/M
3300020222Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250mEnvironmentalOpen in IMG/M
3300020332Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)EnvironmentalOpen in IMG/M
3300020407Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)EnvironmentalOpen in IMG/M
3300020444Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)EnvironmentalOpen in IMG/M
3300020476Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021978Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmerEnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300023208 (restricted)Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MGEnvironmentalOpen in IMG/M
3300025039Marine viral communities from the Pacific Ocean - LP-41 (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025247Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)EnvironmentalOpen in IMG/M
3300025267Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)EnvironmentalOpen in IMG/M
3300025688Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026213Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)EnvironmentalOpen in IMG/M
3300026253Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026321Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300028039Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300mEnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028488Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320mEnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031675Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCMEnvironmentalOpen in IMG/M
3300031703Marine microbial communities from water near the shore, Antarctic Ocean - #34EnvironmentalOpen in IMG/M
3300031800Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051EnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300031803Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983EnvironmentalOpen in IMG/M
3300031811Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8EnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300034695Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500mEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI54feb11_100mDRAFT_106114623300000158MarineMAVTYCTVADVSDFLRVPITATTTPNKAQVEKIINRKEEELDRRIGHTF
LPfeb10P16500mDRAFT_100945713300000173MarineMATTYCSVEDVADYLRIPITSTTVPNKAQIEKIINRKEDELDRRIGHAWRSKKITGERH
LPjun09P16500mDRAFT_105049813300000179MarineMATTYCSVEDVADYLRIPITATTVPNKTQIEKIINRKEDELDRRIGHAWR
LPjun09P12500mDRAFT_104795613300000222MarineMATTXCSVEDVADYLRIPITSTTVPNKAQIEKIINRKEDELDRRIGHAW
LPfeb09P12500mDRAFT_103752213300000248MarineMAVTYCTVEDISDFMRVPISSTTTPNKAQVEKLINRMEEVLDRRIGHTFGRN
KVRMV2_10010479263300002231Marine SedimentMVTTYCSVGDVSDYLRVPINANTTPNKAQVEKIINRKERELERRIGHAWRSKSNQRSS*
KVWGV2_1039181313300002242Marine SedimentMGTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEQELDRRI
JGI26380J51729_1007235333300003619MarineMVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTK
Ga0008648_1019793823300004110MarineMVVTYCTVTDVSDFLRVPITATTTPNKTQVEKIINRKEDELER
Ga0066867_1036342213300005400MarineMATTYCSVADVSDFLRVPITATSTPNKAQVEKIINRKEEELDRRIGHTFGRNKQISR
Ga0066846_1024442823300005429MarineMATTYCSVADVSDFLRVPITATSTPNKAQVEKIINRKEEELDRRIGHT
Ga0066379_1010309933300005951MarineMATTYCSAADVSDFLRIPITATSTPNTAQVEKIINRKE
Ga0066369_1030286313300005969MarineMAVTYCTTADISDFLRVPITATTTPNKTQVEKIINRKEEELDRRIGHTFGRDKI
Ga0066836_1088178723300006166MarineMVTTYCSVADVSDFLRAPITATTTPNKAQVEKIIKRKEDELDRRTGHAWRS
Ga0068470_155711233300006308MarineMVTTYCSVEDVADYLRIPITATTVPNTTQITKIINRKEDELDRRIGHAWRSK
Ga0068471_114159373300006310MarineMATTYCSVEDVADYLRIPITATTVPNKTQIEKIITGKKMS*
Ga0068476_110358033300006324MarineMATTYCSVEDVADYLRIPITATTVPNKTQIEKIINRKEDELDRRIGH
Ga0068476_117785213300006324MarineMATTYCTVGDVADFLRIPITATTTPNTAQVEKIIKRKEDELDRRMGHAWRSK
Ga0068476_134939923300006324MarineMATTYCSSADVSDFLRIPITATSTPNTAQVEKIINRKEEEIERRIGHAWRSK
Ga0068501_118432453300006325MarineMATTYCSVEDVADYLRIPITSTTVPNKAQIEKIINRKEDELDRRIGHAWRSKTA
Ga0068499_104807213300006327MarineMATTYCTVEDVSDFLRIPITPTTTPNKAQVEKIIKRKEDEIDR
Ga0068480_104730813300006335MarineMATTYCSVGDVSDFLRVPLTATTTPSSTQVEKIINRKEEELDRRIGHAWRSKTIT
Ga0068480_182979913300006335MarineMATTYCSVEDVADYLRIPITATTVPNKAQIEKIINRKEDELDR
Ga0068502_107707733300006336MarineMATTYCTVGDVADFLRIPITATTTPNTTQVEKIIKRK
Ga0068502_117358613300006336MarineMAVTYCTVEDISDFMRVPISSTTTPNKAQVEKIINRMEEVLDRRIGHTFGRNK
Ga0068503_1029586943300006340MarineMATTYCSVEDVADYLRIPITATTVPNTTQITKIINRKEDELDRRI
Ga0075461_1017779633300006637AqueousMATYYCTVADVSDFLRIPINATTSPTKAQVEKIINRKEEYLDRRIGH
Ga0098040_109236933300006751MarineMATTYCSAADVSDFLRIPITATSTPNKTQVEKIINRKEEELDRRIGHTFGRDKKITRE
Ga0098054_120063213300006789MarineMATTYCSVGDVADYLRVPITSTSTPNRKQVTKIINRKEEELERRIGHAWRSRKVTREV
Ga0098054_125734233300006789MarineMATTYCTVADVADFLRVPITATSTPNKAQVEKIINRKEEELDRRI
Ga0098055_131090223300006793MarineMAVTYCTVEDVADFLRVPITATSTPNKTQVEKIINRKEEELDRRIGHTFGRDKKITRE
Ga0098055_139006823300006793MarineMVTTYCTVGDVADFLRIPITATTSPNKSQVEKIINRKEAELDR
Ga0066376_1011963853300006900MarineMATTYCSVEDVADYIRIPITATTVPNTTQIEKIIRRKEDELDRRIGHAWRSKKIT
Ga0066372_1033943913300006902MarineMVTTYCSTFDIADFLRIPITSTTTPNKAQIEKLINRKEDEIDRRMGH
Ga0070750_1023284433300006916AqueousMVVTYCTVQDVSDFLRVPITATTTPNKAQVEKLINRKEAEIERRIGHAWTER
Ga0098036_110288633300006929MarineMATTYCSVEDVADLLRIPITATSIPNKAQIEKIINRKEDEFDRRTGHAWRLKTKTRELH
Ga0105020_105354563300007514MarineMATTYCTVEDVADYLRIPITATTVPNKTQIEKIINRKEDELDR
Ga0105668_121195333300007758Background SeawaterMATTYCSVADISDFIRVPITATTTPNTTQVEKLINRKEAELERRLGHAWRSKKI
Ga0105015_103192573300007770MarineMVTTYCTAGDVADFLRIPITATTTPNKAQVEKIINR
Ga0114898_107055133300008216Deep OceanMATVYCTVEDIADYLRIPITATTVPNKTQIEKIIKRKEDELDRRIGHAWRS
Ga0114899_116745223300008217Deep OceanMAVTYCTVEDVSDFMRVPISSTTTPTKAQVEKIINRKEEVLDRRIGHTFGRNKTI
Ga0114996_1041953913300009173MarineMVVTYCTVADVSDFLRVPITATTTPNKTQVEKIINRKEQELDRRIGHHFGGV
Ga0118722_118198643300009376MarineMATTYCSVEDVADYLRIPITSTTVPNKAQIEKIINRKEDELDRRIGHAWRSKKITGERHRLPLL
Ga0115000_1093284013300009705MarineMVTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEEELDRRIGHH
Ga0098049_125147723300010149MarineMATTYCSVADVSDFLRVPITATTTPNKTQVEKIINRKEEELDRRIGH
Ga0098056_101175763300010150MarineMATTYCTVADVSDFLRIPISATTSPTKAQVEKIINRKEEYLDRRIGHTFGRNKTIAKE
Ga0171650_113799633300013114MarineMATTYCSVGDVSDFLRVPITSTSTPNKKQIQKIINRK
Ga0181432_107528743300017775SeawaterMATTYCTVGDVADFLRIPITATTTPNTAQVEKIIKRKEDELDRRMGHAWRSKKIT
Ga0194113_1108379613300020074Freshwater LakeMATTYCSVEDVSDFLRIPITATTFPNTTQVEKIINRKEEY
Ga0194110_1052035313300020084Freshwater LakeMVTTYCSVEDVSDYLRVPITATTSPNKTQVEKIINRKESEF
Ga0194125_1035417613300020222Freshwater LakeMPTTYYCTVSDVSDFLRVPITATTTPNKTQVENIINRK
Ga0211502_106306633300020332MarineMAVTYCTVEDVADFLRIPITATTTPNKTQVEKIINRK
Ga0211575_1037725913300020407MarineMATTYCSVGDVSDFLRVPLTATTTPSSTQVEKIINRKEEELDRRIGHAWRSK
Ga0211578_1040057723300020444MarineMAVTYCTVEDISDFMRVPISSTTTPNKAQVEKIINRMEEVLDRRIGHTFGRN
Ga0211715_1060369523300020476MarineMATTYCTVGDISDYLRVPITANTTPNKAQVEKIINRKEDEFDR
Ga0206683_1033639833300021087SeawaterMATTYCSVEDVSDFLRVPITATTTPNKTQVEKLINRKEA
Ga0232646_121662213300021978Hydrothermal Vent FluidsMVVTYCTVEDVSDFMRVPISSTTTPNKTQVEKFIIRKEEILDRRIGHTFGRDKTITK
Ga0212021_105015233300022068AqueousMATTYCTVADVADFLRVPITATTTPNKTQVEKIINRKEEELDRRIGHT
Ga0212031_107927813300022176AqueousMATTYCTVADVADFLRVPITATTTPNKTQVEKIINRK
Ga0196891_106505613300022183AqueousMATYYCTVADVSDFLRIPINATTSPTKAQVEKIINRKEEYLDRRIGHTFGRNK
(restricted) Ga0233427_1003697513300022933SeawaterMVTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEKELDRRLGHHFGGVISSGKE
(restricted) Ga0233424_1038498913300023208FreshwaterMPTVTYCSVADVSDFLRVPITATTTPNKTQVEKLIVRKEEELDRRIGH
Ga0207878_11411533300025039MarineMVTTYCSAGDVADFLRVPITATTTPNTAQVEKIIKRKEDELDRRMGHA
Ga0208298_102107713300025084MarineMGTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEKELDRRIGHHFGGVISSG
Ga0208793_103659113300025108MarineMGTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEKELDRRIGHHF
Ga0208158_109394613300025110MarineMATTYCSVGDVSDYLRVPINANTTPNKAQVEKIINRKEKELERRIGHAWRSKKVT
Ga0209349_111252533300025112MarineMATTYCSVEDVSDFLRVPISATTTPNKAQVEKIINRKEEEFE
Ga0209644_111818513300025125MarineMATTYCSVEDVADYLRIPITATTVPNTAQITKIINRKEDELDRRIGHAW
Ga0208919_101656313300025128MarineMATTYCSVGDVADYLRVPITSTSTPNRKQVTKIINRKEEELERRIGHAWRSRKVTREVHDLPLLYTY
Ga0207880_106713313300025247Deep OceanMATTYCSVEDVADYLRIPITATTVPNTTQIEKIIRRKEDELDRRIGHAWR
Ga0208179_109623123300025267Deep OceanMATVYCTVEDIADYLRIPITATTVPNKTQIEKIIKRKEDELDRRIGHAWRSKTAYNERHRLPLL
Ga0209140_115119313300025688MarineMVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGH
Ga0208644_108268613300025889AqueousMATTYCSVADISDYLRVPITATTSPNKTQVEKIINRKEGEFERRTGH
Ga0208131_117291913300026213MarineMATTYCTTGDVADLLRIPINATTSPNKAQVEKIIKRKEDELDRRMGHAWRSKKIT
Ga0208879_116545933300026253MarineMATTYCSVEDVADYLRIPITATTVPNTTQIEKIIRRKEDELDRRIGHAWRSKKITGERHS
Ga0208879_136942813300026253MarineMATTYCSVEDVADYLRIPITATTVPNTTQIEKIIKRKEDELDRRIGH
Ga0208764_1056099513300026321MarineMATTYCTVYDVADFLRIPITANTTPNKSQVEKIINRKEA
Ga0209709_1006852543300027779MarineMVTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEEEMDRRIGHHFGGLIASNEEI
Ga0209091_1001490913300027801MarineMVTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEEELDRRLGHHYGGVITS
Ga0256380_100353543300028039SeawaterMATVYCNVEDVADYLRIPITATTVPNITQVEKLINRKEDELDRRIGHAWL
Ga0257107_114773833300028192MarineMATTYCSVEDVADFLRVPITATTTPNKTQVEKIINRK
Ga0257107_119410113300028192MarineMVTTYCSAGDVADFLRVPITATTTPNTAQVEKIIKRKEDEL
Ga0257113_100876413300028488MarineMATTYCSVADISDFIRVPITATTTPNTTQVEKLINRKEAELERRLGH
Ga0257111_122551523300028535MarineMATTYCSAEDVADYLRIPITATTVPNTTQVEKIINRKEDELDRRIGHAWRSKKVYN
Ga0302118_1028393233300031627MarineMVTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEEELDRRIG
Ga0302122_1033274013300031675MarineMVVTYCTVEDVSDFLRVPITATTTPNTAQIEKLINRKEAEIERRIGHAWTTRTI
Ga0308002_113515313300031703MarineMVTTTTYCTVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWK
Ga0310122_1002039213300031800MarineMATTYCSVEDVSDFLRVPITATTTPNKTQVEKIINRK
Ga0310121_1056386023300031801MarineMATTYCSVEDVADYLRIPITATTVPNTAQITKIINRKEDELDRRIGHAWRSKKITGERHSLPLLYI
Ga0310120_1027858813300031803MarineMVTTYCSAGDVADFLRVPITATTTPNTAQVEKIIKRKEDELDRRMGH
Ga0310125_1060718613300031811MarineMATTYCSSADVSDFLRIPITATSTPNTAQVEKIINRKEAE
Ga0310344_1000349513300032006SeawaterMVVTYCTVEDVADFLRIPITATTTPNKTQVEKIINRKEEELD
Ga0315327_1054651013300032032SeawaterMATTYCSVEDVSDFLRVPITATTTPNKTQVEKIINRKEDEFERRTGHAWR
Ga0315329_1054826433300032048SeawaterMATTYCSSADVSDFLRIPITATSTPNTAQVEKIINRKEAEIERRIGHAWR
Ga0315321_1020108213300032088SeawaterMGTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEQELDRRIGHHFGGVISSGK
Ga0310345_1089325733300032278SeawaterMAVTYCTVEDVSDFMRVPISSTTTPNKAQVEKVINRKE
Ga0315334_1003472113300032360SeawaterMATTYCSAADVSDFLRIPITATSTPNTAQVEKIINRKEAEI
Ga0315334_1188546423300032360SeawaterMATTYCSSADVSDFLRIPITATSTPNTAQVEKIINRKEAEIERRI
Ga0310342_10208981513300032820SeawaterMATTYCSVEDVADFLRVPITATTTPNKTQVEKIINRKEDEIDRRMGHA
Ga0310342_10264227913300032820SeawaterMVTTYCTAGDVADFLRIPITATTSPNKAQVEKIINRKEDELDRR
Ga0310342_10362226923300032820SeawaterMATTYCTVGDVADLLRIPINATTSPNKAQVEKIIKRKEDELDRR
Ga0372840_248939_379_5253300034695SeawaterMATTYCSVEDVADYLRIPITATTVPNKTQIEKIINRKEDEFDRRSGHAW


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