Metagenome / Metatranscriptome Family F101993

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101993
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	41 residues
Representative Sequence	MSLLWLRFALACYFIGLVYAFVALTRTSDLFSRIALHAASLGM
Number of Associated Samples	92
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.02 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.275 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (22.549 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.020 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 86.05% β-sheet: 0.00% Coil/Unstructured: 13.95%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08447	PAS_3	2.94
PF00578	AhpC-TSA	1.96
PF13360	PQQ_2	1.96
PF00150	Cellulase	1.96
PF13671	AAA_33	1.96
PF13561	adh_short_C2	0.98
PF01384	PHO4	0.98
PF00903	Glyoxalase	0.98
PF13401	AAA_22	0.98
PF01578	Cytochrom_C_asm	0.98
PF00248	Aldo_ket_red	0.98
PF01061	ABC2_membrane	0.98
PF05192	MutS_III	0.98
PF12876	Cellulase-like	0.98
PF06452	CBM9_1	0.98
PF01977	UbiD	0.98
PF01210	NAD_Gly3P_dh_N	0.98
PF13924	Lipocalin_5	0.98
PF13732	DUF4162	0.98
PF01624	MutS_I	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0249	DNA mismatch repair ATPase MutS	Replication, recombination and repair [L]	1.96
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	1.96
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	1.96
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.98
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.98 %
Unclassified	root	N/A	13.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.75 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.86 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.88 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.98 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.96 %
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.98 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.98 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	1.96 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.98 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.98 %
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001175\|JGI12649J13570_1008947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1214	Open in IMG/M
3300002245\|JGIcombinedJ26739_100662600	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300002245\|JGIcombinedJ26739_101054222	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300004091\|Ga0062387_100741904	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300004092\|Ga0062389_101685706	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300005177\|Ga0066690_10105804	All Organisms → cellular organisms → Bacteria → Acidobacteria	1812	Open in IMG/M
3300005178\|Ga0066688_10663941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300005435\|Ga0070714_102319400	Not Available	522	Open in IMG/M
3300005560\|Ga0066670_10396878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300005602\|Ga0070762_10555802	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005876\|Ga0075300_1040237	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300006032\|Ga0066696_10542307	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300006102\|Ga0075015_101022319	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300006163\|Ga0070715_10060813	All Organisms → cellular organisms → Bacteria	1657	Open in IMG/M
3300006174\|Ga0075014_100981273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300006893\|Ga0073928_10084761	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2704	Open in IMG/M
3300006893\|Ga0073928_10249818	All Organisms → cellular organisms → Bacteria → Acidobacteria	1356	Open in IMG/M
3300006893\|Ga0073928_10944951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	589	Open in IMG/M
3300009552\|Ga0116138_1059636	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300009636\|Ga0116112_1168400	Not Available	609	Open in IMG/M
3300009644\|Ga0116121_1320370	Not Available	501	Open in IMG/M
3300009698\|Ga0116216_10473205	All Organisms → cellular organisms → Bacteria → Acidobacteria	758	Open in IMG/M
3300009787\|Ga0116226_11743898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300009824\|Ga0116219_10081126	All Organisms → cellular organisms → Bacteria → Acidobacteria	1899	Open in IMG/M
3300010339\|Ga0074046_10681751	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010343\|Ga0074044_10725696	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300010343\|Ga0074044_11111803	Not Available	517	Open in IMG/M
3300012356\|Ga0137371_10729630	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300012944\|Ga0137410_11998379	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300014168\|Ga0181534_10080846	All Organisms → cellular organisms → Bacteria → Acidobacteria	1614	Open in IMG/M
3300014657\|Ga0181522_10577630	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300017924\|Ga0187820_1328355	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300017943\|Ga0187819_10476162	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300017948\|Ga0187847_10005630	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8976	Open in IMG/M
3300017972\|Ga0187781_11246063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300017973\|Ga0187780_10641339	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
3300017999\|Ga0187767_10315694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	538	Open in IMG/M
3300018003\|Ga0187876_1231554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300018007\|Ga0187805_10008527	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4247	Open in IMG/M
3300018009\|Ga0187884_10436021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300018023\|Ga0187889_10277196	Not Available	747	Open in IMG/M
3300018042\|Ga0187871_10831018	Not Available	516	Open in IMG/M
3300018047\|Ga0187859_10126513	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300018085\|Ga0187772_10526783	All Organisms → cellular organisms → Bacteria → Acidobacteria	835	Open in IMG/M
3300018086\|Ga0187769_11305407	Not Available	549	Open in IMG/M
3300018090\|Ga0187770_10846854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300018433\|Ga0066667_11915446	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300020579\|Ga0210407_11058915	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300020581\|Ga0210399_10270825	All Organisms → cellular organisms → Bacteria → Acidobacteria	1417	Open in IMG/M
3300020581\|Ga0210399_10843607	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300021088\|Ga0210404_10240002	All Organisms → cellular organisms → Bacteria → Acidobacteria	983	Open in IMG/M
3300021171\|Ga0210405_11324417	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300021180\|Ga0210396_11234551	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300021401\|Ga0210393_10124737	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300021405\|Ga0210387_11269885	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300021407\|Ga0210383_11449743	Not Available	569	Open in IMG/M
3300021433\|Ga0210391_10020091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	5385	Open in IMG/M
3300021479\|Ga0210410_11087384	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300025412\|Ga0208194_1031093	Not Available	842	Open in IMG/M
3300025898\|Ga0207692_10691255	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300025924\|Ga0207694_10853704	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300025928\|Ga0207700_10494155	All Organisms → cellular organisms → Bacteria → Acidobacteria	1082	Open in IMG/M
3300026555\|Ga0179593_1045185	All Organisms → cellular organisms → Bacteria → Acidobacteria	2325	Open in IMG/M
3300026833\|Ga0207728_115363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300027559\|Ga0209222_1082227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300027591\|Ga0209733_1083160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300027648\|Ga0209420_1037531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1495	Open in IMG/M
3300027737\|Ga0209038_10220540	Not Available	571	Open in IMG/M
3300027821\|Ga0209811_10433878	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300027824\|Ga0209040_10268462	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300027854\|Ga0209517_10666209	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300027869\|Ga0209579_10533550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300027908\|Ga0209006_10708997	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300027911\|Ga0209698_10291789	Not Available	1293	Open in IMG/M
3300028798\|Ga0302222_10024415	All Organisms → cellular organisms → Bacteria → Acidobacteria	2481	Open in IMG/M
3300029939\|Ga0311328_11075391	Not Available	520	Open in IMG/M
3300029944\|Ga0311352_10286554	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	1376	Open in IMG/M
3300029952\|Ga0311346_11374920	Not Available	536	Open in IMG/M
3300030007\|Ga0311338_11108454	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300030580\|Ga0311355_10318637	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	1555	Open in IMG/M
3300030580\|Ga0311355_10860737	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300030646\|Ga0302316_10071039	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300030659\|Ga0316363_10086194	All Organisms → cellular organisms → Bacteria → Acidobacteria	1415	Open in IMG/M
3300030879\|Ga0265765_1033255	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300030940\|Ga0265740_1048951	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031128\|Ga0170823_12808762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300031231\|Ga0170824_119674333	Not Available	539	Open in IMG/M
3300031469\|Ga0170819_10950787	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031525\|Ga0302326_10954344	All Organisms → cellular organisms → Bacteria → Acidobacteria	1211	Open in IMG/M
3300031573\|Ga0310915_10878198	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300031753\|Ga0307477_10097571	All Organisms → cellular organisms → Bacteria	2042	Open in IMG/M
3300031823\|Ga0307478_10856151	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300032180\|Ga0307471_100127966	All Organisms → cellular organisms → Bacteria	2386	Open in IMG/M
3300032180\|Ga0307471_100167947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2142	Open in IMG/M
3300032180\|Ga0307471_102038360	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300032782\|Ga0335082_10279877	All Organisms → cellular organisms → Bacteria → Acidobacteria	1545	Open in IMG/M
3300032782\|Ga0335082_11313536	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300032828\|Ga0335080_11151873	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300032892\|Ga0335081_10012090	All Organisms → cellular organisms → Bacteria	13985	Open in IMG/M
3300032892\|Ga0335081_10728847	All Organisms → cellular organisms → Bacteria → Acidobacteria	1197	Open in IMG/M
3300032893\|Ga0335069_10510918	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300033818\|Ga0334804_089159	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.53%
Aquatic	Environmental → Aquatic	24.51%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.73%
Freshwater	Environmental → Aquatic → Freshwater	18.63%
Peat	Environmental → Terrestrial → Peat	9.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.94%
Sediment	Environmental → Aquatic → Sediment	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%
Peat Moss	Host-Associated → Plants → Peat Moss	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.29%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.69%
Loam	Environmental → Terrestrial → Soil → Loam	12.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.80%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001175	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12649J13570_10089471	3300001175	Forest Soil	MALLWLRFALACYFVGLIYAFFALSRTSDLFSRIALHAASLGMVFHF
JGIcombinedJ26739_1006626002	3300002245	Forest Soil	MSLLWLRFALGCYLIGLIYAFVALNRTSDLFSRIALHAATLGMV
JGIcombinedJ26739_1010542222	3300002245	Forest Soil	MALLWLRVALACYFVGLIYAFFALTRTSDLFSRIALHAASL
Ga0062387_1007419042	3300004091	Bog Forest Soil	MALLWLRFALACYFIGLTYAFFALTRTSDLFSRIALHAASLGM
Ga0062389_1016857061	3300004092	Bog Forest Soil	MALLWLRFALACYFIGLIYAFFALRRTSDLFSRIALHAASLG
Ga0066690_101058041	3300005177	Soil	MGPMSLLWLRFALGCYFIGLIYAFVALSRTSDLFSRIALHAASLGMVF
Ga0066688_106639411	3300005178	Soil	MALLWLRFALACYLLGLVYAFVALTRTSDLFSRIALHAASLG
Ga0070714_1023194002	3300005435	Agricultural Soil	MSLLWLRFALACYFIGLTYAFFALSRTSDLFSRIALHAASLGMV
Ga0066670_103968783	3300005560	Soil	MSLLWLRFALGCYFVGLVYAFVALTRTSDLFSRIALHAATIG
Ga0070762_105558022	3300005602	Soil	MALLWLRFALACYFIGLIYAFFALTRTSDLFSRIALHAASLGMVF
Ga0075300_10402372	3300005876	Rice Paddy Soil	MSLLWLRFALGCYFVGLVYAFVALSRTSDLFSRIALHAASL
Ga0066696_105423072	3300006032	Soil	MGPMSLLWLRFALGCYFIGLIYAFVALSRTSDLFSRIALHAASLGM
Ga0075015_1010223191	3300006102	Watersheds	MSLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALHAASLGMVFH
Ga0070715_100608131	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLWLRFALGCYLVGLVYAFVALTRTSDLFSRVAFHAASMGMV
Ga0075014_1009812732	3300006174	Watersheds	MSLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALH
Ga0073928_100847611	3300006893	Iron-Sulfur Acid Spring	MSLLWLRFALGCYFISLIYAFVALTRTSDLFSRIA
Ga0073928_102498181	3300006893	Iron-Sulfur Acid Spring	MSLLWLRCALGCYFVSLIYAFVALTRTRDLFSRIALHAA
Ga0073928_109449512	3300006893	Iron-Sulfur Acid Spring	MSLLWLRFALACYFIGLTYAFFALSRTSDLFSRIALHAASLGMVFHF
Ga0116138_10596361	3300009552	Peatland	MALLWLRFALACYFIGLIYAFFALTRTSDLFSRIA
Ga0116112_11684002	3300009636	Peatland	MALLWLRFALACYFIGLIYAFFALSRTSELFSRIALHAASMGMVFH
Ga0116121_13203701	3300009644	Peatland	MALLWLRFALACYFIGLIYAFFALTRTSDLFSRIALHAASM
Ga0116216_104732052	3300009698	Peatlands Soil	MSLLWLRFALGCYFIGLIYAFVALTRTSDLFSRIALHAASLGMVFHF
Ga0116226_117438982	3300009787	Host-Associated	MALLWLRFALACYFIGLIYAFFALSRTSDLFSRIALHAASLGMVF
Ga0116219_100811263	3300009824	Peatlands Soil	MSLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALHAA
Ga0074046_106817511	3300010339	Bog Forest Soil	MSLLWLRFALACYFIGLIYAFFALSRTSDLFSRIALHA
Ga0074044_107256962	3300010343	Bog Forest Soil	MALLWLRFALACYFVGLIYAFVALSRTSDLFSRIALHAVSL
Ga0074044_111118031	3300010343	Bog Forest Soil	MSLLWLRFALACYFIGLIYAFFALTRTSDLFSRIA
Ga0137371_107296301	3300012356	Vadose Zone Soil	MSLLWLRFALACYFIGLVYAFVALSRTSDLFSRIALHAASLG
Ga0137410_119983791	3300012944	Vadose Zone Soil	MSLLWLRFALGCYFVGLVYAFVALTRPSDLFSRIALHAATMGMVF
Ga0181534_100808462	3300014168	Bog	MALLWLRFALACYCVGLIYAFVALSRTSDLFSRIA*
Ga0181522_105776301	3300014657	Bog	MSLLWLRFALACYFVGLVYAFVALTRTSELFSRIALHAA
Ga0187820_13283552	3300017924	Freshwater Sediment	MSLLWLRFALGCYFISLIYAFVALSRTSDLFSRIALH
Ga0187819_104761621	3300017943	Freshwater Sediment	MALLWLRFALGCYFIGLIYAFVALTRPSDLFSRIALHAASLGMVFHF
Ga0187847_100056307	3300017948	Peatland	MSLLWLRFALGCYFIGLVYAFVALSRTSDLFSRIALHAASLGMVFH
Ga0187781_112460632	3300017972	Tropical Peatland	MSLLWLRFALGCYFIGLIYAFFALTRTSDLFSRIALHAASLGMVF
Ga0187780_106413391	3300017973	Tropical Peatland	MSLLWLRFALACYFIGLVYAFVALSRTSDLFARIALHAASL
Ga0187767_103156942	3300017999	Tropical Peatland	MSLLWLRFALACYFIGLVYAFVALTRTSDLFSRIAL
Ga0187876_12315542	3300018003	Peatland	MSLLWLRFALGCYFIGLVYAFVALSRTSDLFARIALHAASLGMVF
Ga0187805_100085275	3300018007	Freshwater Sediment	MSLLWLRFALACYFIGLVYAFVALHRTSDLFSRIALHAA
Ga0187884_104360211	3300018009	Peatland	MALLWLRFALGCYFIGLIYAFFALSRTSDLFSRIALHAASLGMVF
Ga0187889_102771963	3300018023	Peatland	MALLWLRFALACYFIGLIYAFFALSRTSDLFSRIALHAASL
Ga0187871_108310181	3300018042	Peatland	MALLWLRFALACYFIGLIYAFFALSRTSDLFSRIA
Ga0187859_101265131	3300018047	Peatland	MALLWLRFALACYCVGLIYAFVALTRPSDLFSRIALHAV
Ga0187772_105267831	3300018085	Tropical Peatland	MSLLWLRFALACYFIGLVYAFVALRRTSDLFARIALHAASLGMV
Ga0187769_113054071	3300018086	Tropical Peatland	MALLWLRFALACYFVGLIYAFFALTRTSELFSRIALHAASL
Ga0187770_108468542	3300018090	Tropical Peatland	MSLLWLRFALGCYFIGLIYAFVALTRTSDLFSRIALH
Ga0066667_119154461	3300018433	Grasslands Soil	MGPMSLLWLRFALGCYFIGLIYAFVALSRTSDLFSRIALHAAS
Ga0210407_110589152	3300020579	Soil	MALLWLRFALACYFIGLIYAFFALRRTSDLFSRIALHAAS
Ga0210399_102708251	3300020581	Soil	MALLWLRFALGCYFIGLIYAFFALSRTSDRFSRIALHAASLGMV
Ga0210399_108436071	3300020581	Soil	MSLLWLRFALACYFIGLIYAFFALTRTSDLFSRIALHAASLGM
Ga0210404_102400022	3300021088	Soil	MSLLWLRFALGCYFVGLVYAFVALTRTSDLFSRIA
Ga0210405_113244171	3300021171	Soil	MSLLWLRFALACYFIGLIYAFFALTRPSDLFSRIALHAASLG
Ga0210396_112345511	3300021180	Soil	MSLLWLRFALACYFIGLVYAFVALTRTSDLFSRIALHAASLGM
Ga0210393_101247374	3300021401	Soil	MALLWLRFALACYFIGLIYAFFALSRTSDLFSRIAFHAAS
Ga0210387_112698851	3300021405	Soil	MSLLWLRFALACYFIGLVYAFVALRRTSDLFSRVALHAASLGMVF
Ga0210383_114497432	3300021407	Soil	MALLWLRFALACYCVGLIYAFVALARPSDLFSRIA
Ga0210391_100200911	3300021433	Soil	MALLWLRFALACYFVGLIYAFFALTRTSDLFSRIALHAASL
Ga0210410_110873842	3300021479	Soil	MSLLWLRFALACYFIGLVYAFVALRRTSDLFSRVALHAAS
Ga0208194_10310931	3300025412	Peatland	MALLWLRFALACYFIGLIYAFFALSRTSDLFSRIALH
Ga0207692_106912552	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MPLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALHAAS
Ga0207694_108537041	3300025924	Corn Rhizosphere	MSLLWLRFALGCYFIGLIYAFVALRRTSDLFSRIALH
Ga0207700_104941551	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLWLRFALACYFIGLVYAFVALTRTSDLFSRIALHAASLGMVFH
Ga0179593_10451851	3300026555	Vadose Zone Soil	MSLLWLRFALACYFVGLIYAFFALTRTSDLFSRIALHAASL
Ga0207728_1153631	3300026833	Tropical Forest Soil	MSLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALHAVSLGMVFH
Ga0209222_10822272	3300027559	Forest Soil	MALLWLRFALACYFIGLIYAFFALTRTSDLFSRIALHAASLGMVFHLVS
Ga0209733_10831601	3300027591	Forest Soil	MALLWLRFALACYLLGLVYAFVALTRTSDLFSRIALH
Ga0209420_10375313	3300027648	Forest Soil	MSLLWLRFALACYFIGLIYAFFALSRTSDLFSRIALHAACLGMVFHF
Ga0209038_102205401	3300027737	Bog Forest Soil	MSLLWLRFALACYFIGLIYAFFALTRTSDLFSRIALHVASLGM
Ga0209811_104338781	3300027821	Surface Soil	MSLLWLRFALGCYFIGLVYAFVALRRTSDLFSRIAFHAA
Ga0209040_102684622	3300027824	Bog Forest Soil	MSLLWLRFALACYFIGLTYAFFALTRTSDLFSRIALHAASLGMVFH
Ga0209517_106662091	3300027854	Peatlands Soil	MSLLWLRFALACYLIGLVYAFVALSRTSDMFSRIAL
Ga0209579_105335502	3300027869	Surface Soil	MPLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALHAASLGMVFHF
Ga0209006_107089972	3300027908	Forest Soil	MPLLWLRFALACYFVGLIYAFVALARPSDLFSRIALHAV
Ga0209698_102917892	3300027911	Watersheds	MSLLWLRFALGCYFVGLVYAFVALTRTSDLFSRIALHAAT
Ga0302222_100244153	3300028798	Palsa	MSLLWLRFALACYFIGLIYAFFALSRTSDLFSRIALHAASLGMVFHF
Ga0311328_110753912	3300029939	Bog	MALLWLRFALACYFIGLTYAFFALTRTSDLFSRIALHAASL
Ga0311352_102865541	3300029944	Palsa	MSLLWLRFALACYFIGLVYAFFALTRTSDMFSRIALHA
Ga0311346_113749201	3300029952	Bog	MALLWLRFALACYFIGLTYAFFALTRTSDLFSRIALHAAS
Ga0311338_111084541	3300030007	Palsa	MSLLWLRFALACYFIGLTYAFFALSRTSDLFSRIA
Ga0311355_103186373	3300030580	Palsa	MSLLWLRFALACYFIGLVYAFFALTRTSDMFSRIALH
Ga0311355_108607372	3300030580	Palsa	MALLWLRFALACYCVGLIYAFVALTRTSDLFSRIALHAV
Ga0302316_100710393	3300030646	Palsa	MSLLWLRFALACYFIGLTYAFFALSRTSDLFSRIALHAAS
Ga0316363_100861943	3300030659	Peatlands Soil	MSLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALHA
Ga0265765_10332551	3300030879	Soil	MALLWLRFALACYFIGLIYAFFALTRTSDLFSRIALHAASLGMVFHF
Ga0265740_10489512	3300030940	Soil	MPLLWLRFALACYFVGLIYAFFALSRTSDLFSRIAL
Ga0170823_128087622	3300031128	Forest Soil	MSLLWLRFALGCYFISLIYAFVALTRTSDLFSRVALHAASLGMVF
Ga0170824_1196743332	3300031231	Forest Soil	MSLLWLRFALGCYFISLIYAFVALTRTSDLFSRVAL
Ga0170819_109507871	3300031469	Forest Soil	MSLLWLRFALGCYFISLIYAFVALTRTSDLFSRIALHAASL
Ga0302326_109543441	3300031525	Palsa	MSLLWLRFALGCYFISLIYAFVALTRTSDLFSRVALHAAS
Ga0310915_108781981	3300031573	Soil	MPLLWLRFALCCYAVGLVYALVAMSRTSDLFSEIALHAASLGMVF
Ga0307477_100975714	3300031753	Hardwood Forest Soil	MSLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIALHAASLGMV
Ga0307478_108561511	3300031823	Hardwood Forest Soil	MSLLWLRFALACYFIGLVYAFVALRRTSDLFSRVAL
Ga0307471_1001279661	3300032180	Hardwood Forest Soil	MSLLWLRFALACYFIGLTYAFFALSRTSDLFSRIALHAASLGMVFH
Ga0307471_1001679471	3300032180	Hardwood Forest Soil	MSLLWLRFALGCYFVGLVYAFVALTRTSDLFSRIAL
Ga0307471_1020383602	3300032180	Hardwood Forest Soil	MPLHWLRFALGCYFVGLIYAFVALTRTSDLFSRVAFHAASLGMVF
Ga0335082_102798773	3300032782	Soil	MSLLWLRFALGCYFVGLVYAFVALTRTSETFSRIALHAASMGMV
Ga0335082_113135361	3300032782	Soil	LLWLRFALGCYFIGLIYAFVALTRTSDLFSRIALHAASLG
Ga0335080_111518732	3300032828	Soil	MPLLWLRFALGCYFIGLVYAFVALTRTSDLFSRIAFHAASM
Ga0335081_100120901	3300032892	Soil	MSLLWLRFALGCYFIGLVYAFVALSRTSDLFSRIALHA
Ga0335081_107288473	3300032892	Soil	MSLLWLRFALACYFIGLVYAFVALTRTSDLFSRIALHAATLGMVF
Ga0335069_105109181	3300032893	Soil	MPLLWLRFALACYLIGLIYAFVALNRASDLFSRIALHAAGLGLLF
Ga0334804_089159_1_126	3300033818	Soil	MALLWLRFALACYFIGLTYAFFALTRTSDLFSRIALHAASLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101993

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences