Metagenome Family F102024

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102024
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	45 residues
Representative Sequence	VNSPEDGPVGPKHVEIRRYMNKIEIVTSVGFSFLMLKRCTVQKA
Number of Associated Samples	11
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.98 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	7
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.020 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut (99.020 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.83% β-sheet: 0.00% Coil/Unstructured: 54.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01359	Transposase_1	0.98
PF10191	COG7	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
All Organisms	root	All Organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
cellular organisms	root	All Organisms → cellular organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300028325\|Ga0268261_10065011	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3151	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Arthropoda	Host-Associated → Arthropoda	99.02%
Insecta	Host-Associated → Insecta	0.98%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	99.02%
Digestive System	Host-Associated → Insecta → Digestive System	0.98%

Habitat	Taxonomy	Distribution
Gut	Host-Associated → Arthropoda → Digestive System → Gut	99.02%
Unclassified	Host-Associated → Insecta → Digestive System → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	99.02%
Unclassified	Host-Associated → Insecta → Digestive System → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	99.02%
Termite Gut	Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Termite Gut	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001343	Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5	Host-Associated	Open in IMG/M
3300001541	Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1	Host-Associated	Open in IMG/M
3300001542	Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C	Host-Associated	Open in IMG/M
3300002238	Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1	Host-Associated	Open in IMG/M
3300002308	Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4	Host-Associated	Open in IMG/M
3300005200	Nasutitermes gut metagenome	Host-Associated	Open in IMG/M
3300027539	Nasutitermes corniger midgut segment microbial community from laboratory colony in Florida, USA - Nc150M (SPAdes)	Host-Associated	Open in IMG/M
3300027670	Nasutitermes corniger crop gut microbial community from laboratory colony in Florida, USA - Nc150C (SPAdes)	Host-Associated	Open in IMG/M
3300027966	Nasutitermes corniger P5 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P5 (SPAdes)	Host-Associated	Open in IMG/M
3300028325	Nasutitermes corniger P1 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P1 (SPAdes)	Host-Associated	Open in IMG/M
3300028327	Nasutitermes corniger P3 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P3 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20172J14457_100296141	3300001343	Termite Gut	TNGCVNSCANSPEDGPVGPKHVEIRRYMSKTEIVTSVGFSFHIQYGHRF*
JGI20169J15301_10134041	3300001541	Termite Gut	SPEDGPVGPKHVEIRRYMNKIETVTSVGFPFLMLKSCTVQKA*
JGI20167J15610_100351471	3300001542	Termite Gut	GPKHVEIRRYMNKIEIVTSVGFSFHMLERCTVQKA*
JGI20167J15610_100949351	3300001542	Termite Gut	GPVGPKHVEIRRYMNKIETVTSVGFSFMLKRCTVQKA*
JGI20169J29049_105566262	3300002238	Termite Gut	VNSCVNSPEDGPVGPKHVEIRRYMNKIEIVTSFVFSFHMY*
JGI20169J29049_105813723	3300002238	Termite Gut	PEDGPVGSKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA*
JGI20169J29049_106014032	3300002238	Termite Gut	PVGPKHVEIRRYMNKIELVTSVDFSFHMLKRCTVQKA*
JGI20169J29049_106331031	3300002238	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYMNKIEIGTSVSFSFHMFK*
JGI20169J29049_106380441	3300002238	Termite Gut	VPPGTNGCVNSCVNSPEDGPVGPKHVEIRRYIHKIETVTSVGFSFLMLKRCTVQKA*
JGI20169J29049_107059081	3300002238	Termite Gut	PVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCKVQKA*
JGI20169J29049_108336321	3300002238	Termite Gut	VNSCVNSPEDGPVGPKHVEIRRYMNKIEIVTSLGFSFHIFGYLHTIIM*
JGI20169J29049_108340491	3300002238	Termite Gut	CGNSCVNSPEDGPVGPKHVEIRRYMNKIETVTLVGFSFLMLKRCTVQKA*
JGI20169J29049_108503573	3300002238	Termite Gut	GCGNSCVNSPEDGPVGPKHVEIRRYMNGIETVTSVGFSFLKLHSLWHGKK*
JGI20169J29049_108871921	3300002238	Termite Gut	SCVNFPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCAVQKA*
JGI20169J29049_108887652	3300002238	Termite Gut	TNGCVNSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFHMLNLVG*
JGI20169J29049_109139101	3300002238	Termite Gut	PEDGPVGPKHVEIRRYMNKIETVTSVCFSFLMLKRCTVQKA*
JGI20169J29049_109165192	3300002238	Termite Gut	PEDGPVGPKHVEIRRYMNKIETVTSVGFSFLILKRCKVQKA*
JGI20169J29049_109628631	3300002238	Termite Gut	GCVNSCVNSPEDGPVGPKHVEARRYMNKIEIVTSVGFSFHMLK*
JGI20169J29049_109821802	3300002238	Termite Gut	EDGPVGPKHVEIRRYMSKIETVTSVGFSFLMLKRCTVQKA*
JGI20169J29049_110250311	3300002238	Termite Gut	PEDGPVGPKHVEIRRYMNKIETVTSVGFSILMLKRCTVQKA*
JGI20169J29049_111024371	3300002238	Termite Gut	EDGPVGPKHVEIRRYMNKIELVTSVGFSFHMLKRCTVQKA*
JGI20169J29049_111274402	3300002238	Termite Gut	SSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFRMLKRCTVQKA*
JGI20169J29049_111500891	3300002238	Termite Gut	GNSCVNSPEDVPVGPKHVEIRRYMNKIETVTSAGFSFLMLKRCMVQKA*
JGI20169J29049_111881861	3300002238	Termite Gut	PVGPKHVETRRYMNKIETVTSVGFSILMLKRCTVQKA*
JGI20169J29049_112273551	3300002238	Termite Gut	PEDGPVGPKHVETRRYMNKIEIVTSVGFSFHMLERCTVQKA*
JGI20169J29049_112335031	3300002238	Termite Gut	CVNSCVNSPEDGPVGPKHVEIRRYMNKIEIVTFVDFSFHMYSTV
JGI20169J29049_112536443	3300002238	Termite Gut	CVNSPEDGPVGPKHVEIRRHMNKIETVTSVGFSFLMLKRRTVQKA*
JGI20169J29049_112638914	3300002238	Termite Gut	CVNSCVNSPEDGPVGPKHVEIRRYMNKIEIVTYVGFSFHMININLLL*
JGI20169J29049_112996491	3300002238	Termite Gut	GPVGPKHVEIRRYMNKIETVTSVGFSFLMLKSCTVQKA*
JGI20169J29049_114091051	3300002238	Termite Gut	PEDGPVGPKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA*
JGI20171J29575_116394392	3300002308	Termite Gut	ETNGCVNSCVNSPEDGPVGPKHVEIRRYMKKTEIVTSVGFSFHIYIYICT*
JGI20171J29575_116921941	3300002308	Termite Gut	GTNGCVNSCVNSPEDGPVGPKHVEIRRYIHKIETVTSVGFSFLMLKRCTVQKA*
JGI20171J29575_117238281	3300002308	Termite Gut	VNSPEDGPVGPKHVEIRRYMNKIELVTSVDFSFHMLKRCTVQKA*
JGI20171J29575_118339502	3300002308	Termite Gut	CVNSCVNSPEDGPVGPKHVEIRRYMNKIEIVTSVGFAFHMFYRL*
JGI20171J29575_118758331	3300002308	Termite Gut	VNSPEDGPVGPKHVEIRRNTNKTETVTSVGFSFLMLKRCTVQKAPKCTLDI*
JGI20171J29575_119196192	3300002308	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLIQYLVSSL*
JGI20171J29575_119217971	3300002308	Termite Gut	DGPVGPKHVEIRRYMNKTETVTSVGFSFLMLKRFTVQKALKNAFYTS*
JGI20171J29575_119980161	3300002308	Termite Gut	CVNSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFHMLNLVG*
JGI20171J29575_120231801	3300002308	Termite Gut	PEDGPVGPKHVEISQYMNKIELLTSVGISFYMLKRCTVQKA*
JGI20171J29575_120326481	3300002308	Termite Gut	NSCVNFPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCAVQKA*
JGI20171J29575_121103421	3300002308	Termite Gut	TNGCGNSCVNSPEDGHVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKA*
JGI20171J29575_122174341	3300002308	Termite Gut	EDGPVGPKHVEIRRYMNKIETVTSVGFSFRMRKRRTVQKA*
JGI20171J29575_122322331	3300002308	Termite Gut	CVNSPEDGPVGPKHVEIRRYMNKIETVTSGGFSFLMLKRCTVQKA*
JGI20171J29575_122661022	3300002308	Termite Gut	IVPPGTNGCGNSCVSSPEDGPVGPKHVEIRRYMNQIETVTSVGFSFLMLKRCTVQKA*
JGI20171J29575_122767613	3300002308	Termite Gut	YGYTDGRVNSRVNPPEDGPVGPKHVEIHRYMNKIETVTSVGFSFLMLKRCTVQKA
JGI20171J29575_122813081	3300002308	Termite Gut	VNSPEDGPVGPKRAEIRRYMNKIETVTSVGFSFLMLKRCTVQK
JGI20171J29575_122850344	3300002308	Termite Gut	NGCGNSCVNSPEDGPVGPKHVEIRRYMNKSEIVTSVGFSLLMLKRCTVQKA*
JGI20171J29575_124309192	3300002308	Termite Gut	SCVNSPEDGPVGPKRVEIRRYINKIETVTSVGFSLLMLKRCTVQKA*
JGI20171J29575_124318843	3300002308	Termite Gut	SCVNSPEDGPVGPKHVEIRRYMNKIEIVTYVGFSFHMININLLL*
Ga0072940_14724581	3300005200	Termite Gut	NSHEDGPVGPKHVGIRRYMDKIERVTSVGFSFLVLKRCTVQKA*
Ga0209424_10661931	3300027539	Termite Gut	DGPVGPKHVEIRRYMNKIETVTSVGFSFRMLKRCTVQKA
Ga0209424_11630111	3300027539	Termite Gut	GPVGPKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0209424_12324251	3300027539	Termite Gut	EDGPVGPKRVEIRRYMNKIVIVSSVGFLFHMLKRCT
Ga0209424_12431671	3300027539	Termite Gut	DGPVGPKHVEISQYMNKIELLTSVGISFYMLKRCTVQKA
Ga0209424_13011442	3300027539	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYVNKIETVTSVGFSFLMLKRCTVQKA
Ga0209424_13315791	3300027539	Termite Gut	NSSEDGPVGPKHVEIQQYTNKIETVTSVGFPFLMLKRCTVQKA
Ga0209423_100209631	3300027670	Termite Gut	CGNSCVNSPEDGPVGPKHVEIRRYMNKIETVTLVGFSFLMLKRCTVQKA
Ga0209423_100592661	3300027670	Termite Gut	VDSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKA
Ga0209423_100905781	3300027670	Termite Gut	NSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFMLKRCTVQKA
Ga0209423_101295301	3300027670	Termite Gut	DGPVGPKHVEIQQYTNKIETVTSVGFPFLMLKRCTVQKA
Ga0209423_102089002	3300027670	Termite Gut	EDGLVGPKHVEIRQYMNKIQTVTSVGFSIHMLKRCMVQKA
Ga0209423_102111451	3300027670	Termite Gut	VGPKHVEIRRYMNKIETVTSVGFSFRMLKRCTVQKA
Ga0209423_102278771	3300027670	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFHMLNLVG
Ga0209423_102518261	3300027670	Termite Gut	EDGPVGPKHVETRRYMNKIEIVTSVGFSFLMLKRCTVQKALKKKNYSV
Ga0209423_103424921	3300027670	Termite Gut	VNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQ
Ga0209423_103936591	3300027670	Termite Gut	NGCGDSCVRSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKSLKFI
Ga0209423_104287781	3300027670	Termite Gut	GPKHVEIRRYMNKIELVTSVDFSFHMLKRCTVQKA
Ga0209423_104434801	3300027670	Termite Gut	DGPVGPKHVEIRQYINKIEIVTSVGFYPICQKGCTVQKA
Ga0209423_106032551	3300027670	Termite Gut	EDGPVGPKHVEILRYMNKIETVTSVGFSFLMQKRCTVQKA
Ga0209738_101184051	3300027966	Termite Gut	NSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFHMLERCTVQKA
Ga0209738_101889781	3300027966	Termite Gut	PEDGPVGPKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0209738_101936321	3300027966	Termite Gut	CTNSPEDGPVGPKHVEIQQYTNKIVTSVGFHSMLKRCTVQKA
Ga0209738_102285691	3300027966	Termite Gut	SCVNSPEEWPVGPKHVEIRQYMNKIEIVTSLGFSFHMLKRCTVQKA
Ga0209738_102438121	3300027966	Termite Gut	NSPEDGPVGPKHVEIRRYMNKIEIVTSVGFSFLTLKRCMVQKA
Ga0209738_102671191	3300027966	Termite Gut	VNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSILMLKRCTVQKA
Ga0209738_103238852	3300027966	Termite Gut	SPEDGPVGSKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0209738_103389721	3300027966	Termite Gut	SPEDGPVGPKHVEIRRYMNKIETVTSVCFSFLMLKRCTVQKA
Ga0209738_104879181	3300027966	Termite Gut	GCVNSCVNSPEDGPVDPKHVEIRRYMNKIEIVASVGFSFHMLKRCTVQKA
Ga0209738_106156831	3300027966	Termite Gut	NGCVNSCVNSPEDGPVSPKHVETRRYMNKIEIVTSVGFSFHMLKRCTVQNA
Ga0268261_100330851	3300028325	Termite Gut	IGCGNSCVNSPEDGPVGQKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKA
Ga0268261_100396095	3300028325	Termite Gut	VNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKAQNLLDTVFE
Ga0268261_100449375	3300028325	Termite Gut	VNSPEDGPVGPKHVEIRRYMNKIEIVTSVGFSFHTLKRCTVQNV
Ga0268261_100475402	3300028325	Termite Gut	VNSPEDGPVGPKHVEIRRHMNKIETVTSVGFSFLMLKRRTVQKA
Ga0268261_100549252	3300028325	Termite Gut	VNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKSCTVQKA
Ga0268261_100650115	3300028325	Termite Gut	NGCVNSCVNSPENGPVGPKRVETRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0268261_100797232	3300028325	Termite Gut	VNSPEDGPVGPKHVEIRRYTNKIEIVTSVGFVIRMLKRCTVQKA
Ga0268261_101714491	3300028325	Termite Gut	TNGCVNSCVNSPEDGPVGPKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0268261_102646151	3300028325	Termite Gut	DGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKA
Ga0268261_103996031	3300028325	Termite Gut	EDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKA
Ga0268261_104219082	3300028325	Termite Gut	VNSRVNPPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKA
Ga0268261_104889671	3300028325	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLM
Ga0268261_105256511	3300028325	Termite Gut	VGPKRAEIRRYMNKIETVTSVGFSFLMLKRCTVQKA
Ga0268261_105376981	3300028325	Termite Gut	GCGNSCVNSPEDGPVGPKHVEISQYMNKIELLTSVGISFYMLKRCTVQKA
Ga0268261_105426871	3300028325	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMLKRCTVQKA
Ga0268261_105430251	3300028325	Termite Gut	TNGCVNSCVNCPEDGPVGPKHVETRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0268261_105511701	3300028325	Termite Gut	VNSPEDGLVGPKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQK
Ga0268261_106297901	3300028325	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0268261_106420311	3300028325	Termite Gut	VNSPEDGPVGPKHVEIRRYMNKIEIVTSVGFSFLMLKRCTVQKA
Ga0268261_106701561	3300028325	Termite Gut	NSPEDGPVGPKHVEIRRYMNKIEIVTSVGFSFHMLKRCTVQKA
Ga0268261_106890961	3300028325	Termite Gut	GCVNSCVNSPEDGPVGPKHVEIRRYMNKIEIGTSVSFSFHMFK
Ga0268261_107116381	3300028325	Termite Gut	NGCVNSCVNSPEDGPVGPKHVEIRRYMNKIETVTSVGFSFLMSVVS
Ga0268262_105457261	3300028327	Termite Gut	QENSPEDGTVGPKHVEIRRYMNKIEAVTSVGFSFLMLKRCTVQKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102024

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences