Metagenome / Metatranscriptome Family F102164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102164
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	41 residues
Representative Sequence	ERASAADLVRRLATVPPALAQLFASIAASDATHVTALGG
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.96 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.627 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (40.196 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 46.27% β-sheet: 0.00% Coil/Unstructured: 53.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14530	DUF4439	83.33
PF01425	Amidase	8.82
PF13538	UvrD_C_2	2.94
PF03551	PadR	0.98
PF13312	DUF4081	0.98
PF01476	LysM	0.98
PF13581	HATPase_c_2	0.98
PF07650	KH_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	8.82
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	54.90 %
Unclassified	root	N/A	31.37 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	54.90 %
Unclassified	root	N/A	31.37 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.33 %
Unclassified	root	N/A	31.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.37 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	20.59 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.94 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.37 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.59 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.94 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.37 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.59 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.94 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.37 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.59 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.94 %
Taibaiella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Taibaiella	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.37 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.59 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.94 %
Taibaiella soli	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Taibaiella → Taibaiella soli	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig112476	Not Available	526	Open in IMG/M
3300003505\|JGIcombinedJ51221_10245538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	727	Open in IMG/M
3300004091\|Ga0062387_101292657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300004092\|Ga0062389_102033245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	751	Open in IMG/M
3300005541\|Ga0070733_10247493	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300005555\|Ga0066692_10889685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	546	Open in IMG/M
3300005921\|Ga0070766_10737934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	668	Open in IMG/M
3300006086\|Ga0075019_10819753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	594	Open in IMG/M
3300009098\|Ga0105245_11645738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	694	Open in IMG/M
3300009098\|Ga0105245_12601437	Not Available	559	Open in IMG/M
3300009672\|Ga0116215_1458457	Not Available	551	Open in IMG/M
3300009698\|Ga0116216_10089678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1893	Open in IMG/M
3300009698\|Ga0116216_10194802	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300009839\|Ga0116223_10612354	Not Available	628	Open in IMG/M
3300010361\|Ga0126378_10435358	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300010361\|Ga0126378_11009627	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300010373\|Ga0134128_11464142	Not Available	752	Open in IMG/M
3300010376\|Ga0126381_104923634	Not Available	513	Open in IMG/M
3300010398\|Ga0126383_11445331	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300010866\|Ga0126344_1312392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300010877\|Ga0126356_10096654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	878	Open in IMG/M
3300012357\|Ga0137384_11239160	Not Available	592	Open in IMG/M
3300012357\|Ga0137384_11339526	Not Available	563	Open in IMG/M
3300012955\|Ga0164298_11192725	Not Available	576	Open in IMG/M
3300012960\|Ga0164301_10455066	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300012989\|Ga0164305_12113991	Not Available	516	Open in IMG/M
3300013307\|Ga0157372_11333251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	828	Open in IMG/M
3300014169\|Ga0181531_10685761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300017937\|Ga0187809_10195522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	715	Open in IMG/M
3300017942\|Ga0187808_10036693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2041	Open in IMG/M
3300017943\|Ga0187819_10252422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1032	Open in IMG/M
3300017943\|Ga0187819_10459080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	729	Open in IMG/M
3300018044\|Ga0187890_10756826	Not Available	549	Open in IMG/M
3300018060\|Ga0187765_11046384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300018062\|Ga0187784_10495134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	985	Open in IMG/M
3300020579\|Ga0210407_10493891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	957	Open in IMG/M
3300020579\|Ga0210407_10702136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
3300020581\|Ga0210399_10969651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	686	Open in IMG/M
3300021088\|Ga0210404_10108256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1412	Open in IMG/M
3300021180\|Ga0210396_10739376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300021181\|Ga0210388_10580674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300021405\|Ga0210387_11126709	Not Available	683	Open in IMG/M
3300021475\|Ga0210392_11264262	Not Available	552	Open in IMG/M
3300021475\|Ga0210392_11415864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300021478\|Ga0210402_10487250	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300021478\|Ga0210402_11197825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	687	Open in IMG/M
3300021559\|Ga0210409_10361362	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300021559\|Ga0210409_10581985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	987	Open in IMG/M
3300024222\|Ga0247691_1022696	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300024310\|Ga0247681_1003089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1978	Open in IMG/M
3300025928\|Ga0207700_11933426	Not Available	516	Open in IMG/M
3300026356\|Ga0257150_1024960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300026515\|Ga0257158_1003637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2041	Open in IMG/M
3300027609\|Ga0209221_1007956	All Organisms → cellular organisms → Bacteria	2713	Open in IMG/M
3300027648\|Ga0209420_1160285	Not Available	613	Open in IMG/M
3300027662\|Ga0208565_1129626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300027812\|Ga0209656_10036733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2854	Open in IMG/M
3300027829\|Ga0209773_10199528	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300027867\|Ga0209167_10147495	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300027867\|Ga0209167_10342682	Not Available	811	Open in IMG/M
3300027882\|Ga0209590_10692996	Not Available	652	Open in IMG/M
3300027895\|Ga0209624_10900830	Not Available	577	Open in IMG/M
3300027898\|Ga0209067_10256895	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Taibaiella → Taibaiella soli	952	Open in IMG/M
3300028780\|Ga0302225_10243967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	858	Open in IMG/M
3300028780\|Ga0302225_10372622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300028879\|Ga0302229_10531327	Not Available	518	Open in IMG/M
3300028906\|Ga0308309_10107304	Not Available	2173	Open in IMG/M
3300029943\|Ga0311340_10167771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2266	Open in IMG/M
3300029944\|Ga0311352_10008219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11150	Open in IMG/M
3300029999\|Ga0311339_10215703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2151	Open in IMG/M
3300030617\|Ga0311356_10293877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1630	Open in IMG/M
3300031564\|Ga0318573_10578528	Not Available	605	Open in IMG/M
3300031668\|Ga0318542_10312696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	805	Open in IMG/M
3300031713\|Ga0318496_10557136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300031718\|Ga0307474_11516926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300031747\|Ga0318502_10710328	Not Available	608	Open in IMG/M
3300031747\|Ga0318502_10977698	Not Available	516	Open in IMG/M
3300031764\|Ga0318535_10398525	Not Available	614	Open in IMG/M
3300031765\|Ga0318554_10202127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1131	Open in IMG/M
3300031765\|Ga0318554_10546127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	654	Open in IMG/M
3300031770\|Ga0318521_10657594	Not Available	635	Open in IMG/M
3300031782\|Ga0318552_10601494	Not Available	561	Open in IMG/M
3300031795\|Ga0318557_10169659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	991	Open in IMG/M
3300031805\|Ga0318497_10072062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1818	Open in IMG/M
3300031819\|Ga0318568_10623375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	671	Open in IMG/M
3300031819\|Ga0318568_11042703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300031846\|Ga0318512_10577434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	572	Open in IMG/M
3300031846\|Ga0318512_10690245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300031896\|Ga0318551_10723938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300031941\|Ga0310912_11498297	Not Available	508	Open in IMG/M
3300031945\|Ga0310913_11303467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300032001\|Ga0306922_10855542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300032043\|Ga0318556_10387461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	731	Open in IMG/M
3300032044\|Ga0318558_10483126	Not Available	618	Open in IMG/M
3300032063\|Ga0318504_10266758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	807	Open in IMG/M
3300032063\|Ga0318504_10444127	Not Available	620	Open in IMG/M
3300032065\|Ga0318513_10439427	Not Available	637	Open in IMG/M
3300032261\|Ga0306920_102670495	Not Available	683	Open in IMG/M
3300032770\|Ga0335085_11368375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	743	Open in IMG/M
3300032895\|Ga0335074_11142116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M
3300032897\|Ga0335071_11398309	Not Available	644	Open in IMG/M
3300033134\|Ga0335073_11041883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.08%
Host-Associated	Host-Associated	2.94%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.31%
Aquatic	Environmental → Aquatic	11.76%
Plants	Host-Associated → Plants	2.94%
Modeled	Engineered → Modeled	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.45%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Peat	Environmental → Terrestrial → Peat	6.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Sediment	Environmental → Aquatic → Sediment	1.96%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.80%
Loam	Environmental → Terrestrial → Soil → Loam	6.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	40.20%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300024310	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0470.00006850	2166559005	Simulated	AERASAADLVRRLATAPPALAQLLASIAASDATHVTALGG
JGIcombinedJ51221_102455383	3300003505	Forest Soil	RLRAAERASAAGLVQRLTTVQPALAQLFASIAASDATHVTVLAEAGLGG*
Ga0062387_1012926571	3300004091	Bog Forest Soil	ASAAGLVQQLATVEPALAQLFASIAASDATHVTVLTDNGLAEG*
Ga0062389_1020332453	3300004092	Bog Forest Soil	ASAAGLVQQLATVEPALAQLFASIAASDATHVTALAGNGLG*
Ga0070733_102474933	3300005541	Surface Soil	SADLVRRLGGAEPALAQLFASIAACHATHVAALGG*
Ga0066692_108896851	3300005555	Soil	ASAADLVRRLATVPPSLAQLLASIAASDATHVTVLGG*
Ga0070766_107379341	3300005921	Soil	ASAAGLVRRLATVEPALAQLFASIAASDATHVAALGG*
Ga0075019_108197532	3300006086	Watersheds	LRAAERASAAGLVQRLASVEPALAQLFASIAASDATHVTVLTDNGLAEG*
Ga0105245_116457382	3300009098	Miscanthus Rhizosphere	AERASAADLVRRLATAPPALAQLLASIAASDATHVTALGG*
Ga0105245_126014372	3300009098	Miscanthus Rhizosphere	RASAADLVRRLATAPPALAQLLASIAASDATHVTALGG*
Ga0116215_14584572	3300009672	Peatlands Soil	ASAAGLVQRLATVEPALAQLFASIAASDATHVTVLADNGLAG*
Ga0116216_100896784	3300009698	Peatlands Soil	AAERASAAGLVQRLATVEPALAQLFASIAASDATHVTVLADKGLG*
Ga0116216_101948023	3300009698	Peatlands Soil	AGLVQQLATVEPALAQLFASIAASDATHVTVLAEKGPG*
Ga0116223_106123541	3300009839	Peatlands Soil	LVQRLATVEPALAQLFASIAASDATHVTVLAEKGLE*
Ga0126378_104353583	3300010361	Tropical Forest Soil	SAADLVRRLATVPPALAQLFASIAASDATHVTVLGG*
Ga0126378_110096273	3300010361	Tropical Forest Soil	SAAGLVQRLASVPPALAQLFASIAASDATHVTVLGG*
Ga0134128_114641421	3300010373	Terrestrial Soil	RLRAAERASAASLVRQLGAMPPALAQLFASIAASDATHVTALGG*
Ga0126381_1049236341	3300010376	Tropical Forest Soil	RASAAGLVQRLASVPPALAQLFASIAASDATHVTVLGG*
Ga0126383_114453313	3300010398	Tropical Forest Soil	AILVQRLDTVPPALAQLFASIAASDATHVTALGG*
Ga0126344_13123922	3300010866	Boreal Forest Soil	SAADLVRRLGSVPPALAQLFASIAASDATHVAALGG*
Ga0126356_100966543	3300010877	Boreal Forest Soil	LRAAEHASAGRLVQQLATVEPALAQLFASIAPSDATHVTALGG*
Ga0137384_112391602	3300012357	Vadose Zone Soil	ARVTVARLHAAERASAADLVQRLATVPPALAQLFASIAASDATHVTVLGG*
Ga0137384_113395261	3300012357	Vadose Zone Soil	AELVQRLSTVSPALAQLLASIAASDATHATVLANKGLTSKGLGG*
Ga0164298_111927252	3300012955	Soil	LRAAERASAADLVQRLATVPPALAQLFASIAASDATHVAVLGG*
Ga0164301_104550661	3300012960	Soil	AADLVRRLATAPPALAQLLASIAASDATHATALGG*
Ga0164305_121139912	3300012989	Soil	LRAAERASAADLVQRLGTVPPALAQLFASIAASDATHVAVLGG*
Ga0157372_113332513	3300013307	Corn Rhizosphere	GSSPRVSTVTTSRLRSAERASAADLVRRLATVPPALAQLLASIAASDATHVTVLGG*
Ga0181531_106857611	3300014169	Bog	ERASAAGLVRRLATVEPALAQLFASIAASDATHVTALGG*
Ga0187809_101955223	3300017937	Freshwater Sediment	LRTAERESATSLVRQLGAAEPALAQLFASIAACHATHVAALSG
Ga0187808_100366936	3300017942	Freshwater Sediment	LRAAEHASATGLLTRLVTVEPSLAQLFASIAASDATHVVALGGWG
Ga0187819_102524221	3300017943	Freshwater Sediment	ERAPVADLLRRLVTVQPALAQLFASIAASDATHAVALSG
Ga0187819_104590802	3300017943	Freshwater Sediment	ERASAADLLRRLVTVQPALAQLFASIAASDATHVVALGG
Ga0187890_107568261	3300018044	Peatland	EHASATRLVQRLATVEPALAQLFASIAASDATHVTALGG
Ga0187765_110463841	3300018060	Tropical Peatland	ASATDLVGRLVSMPPALAQLFASIAASDATHVVALGG
Ga0187784_104951343	3300018062	Tropical Peatland	RLRAAERASAAGLVQRLGPVEPALAQLFASIAASDVTHVMALGG
Ga0210407_104938913	3300020579	Soil	QRLTTVQPALAQLFASIAASDATHVTVLAEAGLGG
Ga0210407_107021363	3300020579	Soil	ERASAANLVRRLATAPPALAQLLASIAASDATHVTALGG
Ga0210399_109696511	3300020581	Soil	AGLVQRLTTVQPALAQLFASIAASDATHVTVLAEAGLGG
Ga0210404_101082563	3300021088	Soil	LRAAERASATDLVRRLVSVPPALAQLFASIAASDATHVAALGG
Ga0210396_107393763	3300021180	Soil	ASATDLVQRLVSVPPALAQLFASIAASDATHVAALAGYGQG
Ga0210388_105806741	3300021181	Soil	ERASAVGLVRRLATVEPALAQLFASIAASDATHVAALGG
Ga0210387_111267091	3300021405	Soil	ASATGLVQRLTTVEPALAQLFASIAASDATHVTVLAEAGLGG
Ga0210392_112642622	3300021475	Soil	ERASAADLVQRLATAPPALAQLLASIAASDATHATALGG
Ga0210392_114158642	3300021475	Soil	RTTIAQLRTAEGASATDLVQRLVSEPPALAQLFASIAASDATHVAALAGYGQG
Ga0210402_104872502	3300021478	Soil	GLRAAERASAADLVQRLVTVPPALAQLFASIAASDATHVTALGG
Ga0210402_111978253	3300021478	Soil	AADLVRRLATAPPALAQLLASIAASDATHATALGG
Ga0210409_103613621	3300021559	Soil	LRAAERASAADLVQRLATAPPALAQLLASIAASDATHVTVLGG
Ga0210409_105819853	3300021559	Soil	AQLRTAEGASATDLVQRLVSVPPALAQLFASIAASDATHVAALAGYGQG
Ga0247691_10226961	3300024222	Soil	ERASAADLVRRLATAPPALAQLLASIAASDATHATALGG
Ga0247681_10030891	3300024310	Soil	ASAADLVRRLATAPPALAQLLASIAASDATHATALGG
Ga0207700_119334261	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ASAADLVQRLGTVPPALAQLFASIAASDATHVAVLGG
Ga0257150_10249603	3300026356	Soil	ASATDLVRRLVSVPPALAQLFASIAASDATHVVALGGNGQGS
Ga0257158_10036371	3300026515	Soil	LVRRLVSVPPALAQLFASIAASDATHVVALGGNGQGS
Ga0209221_10079561	3300027609	Forest Soil	LRAAEQRSASSLVRRLSTVSVEPALAQLLASIAASDASHDAELGAL
Ga0209420_11602852	3300027648	Forest Soil	AGVRRLGTVEPALAQLFASIAACDATHVAALAALA
Ga0208565_11296263	3300027662	Peatlands Soil	ADLVQRLATVEPALAQLFASIAASDATHVTVLAEKGLG
Ga0209656_100367333	3300027812	Bog Forest Soil	VQRLATVEPALAQLFASIAASDATHVTVLAEKGLG
Ga0209773_101995283	3300027829	Bog Forest Soil	LVQRLATVEPALAQLFASIAASDATHATALAAKGLG
Ga0209167_101474953	3300027867	Surface Soil	SADLVRRLGGAEPALAQLFASIAACHATHVAALGG
Ga0209167_103426821	3300027867	Surface Soil	VTVEVLRGAEGASATDLVRRLVNVPPALAQLFASIAASDATHVTALGG
Ga0209590_106929961	3300027882	Vadose Zone Soil	RASAAGLVQRLATVPPALAQLLASIAASDATHVTVLGG
Ga0209624_109008302	3300027895	Forest Soil	VSIAQLRAAEGASAASLLRRLATVQPALAQLFASIAASDATHAMVLGG
Ga0209067_102568953	3300027898	Watersheds	QLRAAERASAAGLVQRLASVEPALAQLFASIAASDATHVTVLTDNGLAEG
Ga0302225_102439673	3300028780	Palsa	AERASAAGLVRRLATVEPALAQLFASIAASDATHVAALGG
Ga0302225_103726221	3300028780	Palsa	SAASLVRRLATVEPALAQLFASIAASDATHVAALGG
Ga0302229_105313272	3300028879	Palsa	ERASAASLVRRLATVEPALAQLFASIAASDATHVTALGG
Ga0308309_101073041	3300028906	Soil	AAERASAADLVQRLATVEPALAQLFASIAASDATHATVLAEKGLG
Ga0311340_101677711	3300029943	Palsa	AAERASATNLVRRLVTVPPDLAQLFASIAASDATHAVALGG
Ga0311352_1000821914	3300029944	Palsa	AVGLVRRLATVEPALAQLFASIAASDATHVTALGG
Ga0311339_102157033	3300029999	Palsa	TAVARHVTIARLQAAERTSATDLVRRLSTAAPALAQLFASIAASDATHLVALGG
Ga0311356_102938773	3300030617	Palsa	SAAGLVRRLATTEPALAQLLASIAASDATHVAVLGG
Ga0318573_105785281	3300031564	Soil	VSTVRLREAERASAAGLVQRLATVEPALAQLFASIAASDATHATALGG
Ga0318542_103126962	3300031668	Soil	AEQASAADLLRRLVTVQPALAQLFASIAASDATHLAALGG
Ga0318496_105571362	3300031713	Soil	LRAAEHASAADLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0307474_115169261	3300031718	Hardwood Forest Soil	VPPGLVQLRAAERESSVDLVRRLGGAEPALAQLFASIAACHATHVAALGG
Ga0318502_107103282	3300031747	Soil	ASTADLLRRLVTVQPALAQLFASIAASDATHVAALGG
Ga0318502_109776981	3300031747	Soil	VSTERLRAAERASAADLVRRLVTMPPALAQLFASIAASDATHVTVLGG
Ga0318535_103985251	3300031764	Soil	ERLRAAERASAADLVRRLVTMPPALAQLFASIAASDATHVTVLGG
Ga0318554_102021271	3300031765	Soil	GLVRRLATVQPALAQLFASIAASDATHATVLARIGG
Ga0318554_105461272	3300031765	Soil	AAGLLRRLVTVQPALAQLFASIAASDATHAVALGG
Ga0318521_106575941	3300031770	Soil	ERASAADLVRRLATVPPALAQLFASIAASDATHVTALGG
Ga0318552_106014941	3300031782	Soil	ASAAGLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0318557_101696593	3300031795	Soil	RASAAGLVQRLGTAEPALAQLFASIAASDATHVTALGG
Ga0318497_100720624	3300031805	Soil	ARAAERASAADLVRRLVTMPPALAQLFASIAASDATHVTVLGG
Ga0318568_106233751	3300031819	Soil	SRLRAAEHASAADLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0318568_110427032	3300031819	Soil	AERGSAADLLRRLAGVPPALAQLFASIAASDATHQAALGG
Ga0318512_105774341	3300031846	Soil	AEHASAAGLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0318512_106902451	3300031846	Soil	AVTVSRLRAAEHASAAGLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0318551_107239382	3300031896	Soil	RLRAAERASVADLIRRLVTVQPALAQLFASIAASDATHVAALSG
Ga0310912_114982971	3300031941	Soil	AEHASAADLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0310913_113034671	3300031945	Soil	RAAERASAADLLRRLVTVQPALAQLLASIAASDATHVAALGG
Ga0306922_108555423	3300032001	Soil	AAERASAADLVRRLATVPPALAQLFASIAASDATHVTALGG
Ga0318556_103874612	3300032043	Soil	SAAGLVQRLGTAEPALAQLFASIAASDATHVTALGG
Ga0318558_104831262	3300032044	Soil	PRAVTVSRLRAAEHASAADLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0318504_102667581	3300032063	Soil	TVTSLRSRSAAEQASAADLLRRLVTVQPALAQLFASIAASDATHLAALGG
Ga0318504_104441271	3300032063	Soil	STGPVRVSTARLREAERASAAGLVQRLATVEPALAQLFASIAASDATHATALGG
Ga0318513_104394272	3300032065	Soil	GASAADLVQRLATVPPALAQLFASIAASDATHVTALGG
Ga0306920_1026704951	3300032261	Soil	ASPGPVRVSTVRLREAERASAAGLVQRLATVEPALAQLFASIAASDATHATALGG
Ga0335085_113683753	3300032770	Soil	ASAADLVQQLAAMPPALAQLFASIAASDATHATALGG
Ga0335074_111421162	3300032895	Soil	RASAADLVRQLVTVPPALAQLFASIAASDATHVVALGG
Ga0335071_113983091	3300032897	Soil	EHASAADLVQRLATAPPALAQLFASIAASDATHVTALGG
Ga0335073_110418831	3300033134	Soil	AERASAEDLVQRLATVPPALAQLFASIAASDATHVTALGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences