Metagenome Family F102185

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F102185
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	85 residues
Representative Sequence	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLSNEGKIGTLWTPDHVDDLRWRVEIDKDQS
Number of Associated Samples	17
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	14.29 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.99 %
Associated GOLD sequencing projects	17
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (94.059 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza (85.148 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (75.248 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.67% β-sheet: 15.83% Coil/Unstructured: 77.50%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF12143	PPO1_KFDV	4.95
PF05699	Dimer_Tnp_hAT	2.97
PF13855	LRR_8	1.98
PF04526	DUF568	1.98
PF14631	FancD2	0.99
PF00931	NB-ARC	0.99
PF14223	Retrotran_gag_2	0.99
PF14291	DUF4371	0.99
PF02519	Auxin_inducible	0.99
PF13960	DUF4218	0.99
PF03188	Cytochrom_B561	0.99
PF02458	Transferase	0.99
PF13961	DUF4219	0.99
PF07727	RVT_2	0.99
PF00060	Lig_chan	0.99
PF13963	Transpos_assoc	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	Signal transduction mechanisms [T]	1.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
All Organisms	root	All Organisms	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
cellular organisms	root	All Organisms → cellular organisms	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Malpighiales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Salicaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Saliceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	4.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Populus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.06 %
Populus davidiana	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300028794\|Ga0307515_10035544	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae	8100	Open in IMG/M
3300030521\|Ga0307511_10008906	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	10015	Open in IMG/M
3300031649\|Ga0307514_10063511	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana	2803	Open in IMG/M
3300031649\|Ga0307514_10217455	Not Available	1176	Open in IMG/M
3300032354\|Ga0325403_1020107	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	6053	Open in IMG/M
3300032389\|Ga0325405_1015790	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	6933	Open in IMG/M
3300033179\|Ga0307507_10030257	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	5713	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	85.15%
Wood	Host-Associated → Plants → Wood	13.86%
Phylloplane	Host-Associated → Plants → Phylloplane	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	85.15%
Unclassified	Host-Associated → Plants → Wood → Unclassified	13.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	85.15%
Unclassified	Host-Associated → Plants → Wood → Unclassified → Unclassified	13.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	85.15%
Xylem	Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem	13.86%
Leaf	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030522	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM	Host-Associated	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031838	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM	Host-Associated	Open in IMG/M
3300032354	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4	Host-Associated	Open in IMG/M
3300032355	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2	Host-Associated	Open in IMG/M
3300032374	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1	Host-Associated	Open in IMG/M
3300032389	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2	Host-Associated	Open in IMG/M
3300033179	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM	Host-Associated	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300034389	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0307517_1000068134	3300028786	Ectomycorrhiza	MQWYGPIIEIEAENSGGELLKRDCPIRRHLKVITVVDGDEEEEVTHVCPITCVELLSGEILIALREGKIGIL
Ga0307517_100101921	3300028786	Ectomycorrhiza	MQWYGPIIEIETRNSGGELLKRDCPIRRHLKVIIVVDEDKEEEEEITHICPITCAELLSGDFLVALKKDKIGTLWTPNQLDN
Ga0307517_100138942	3300028786	Ectomycorrhiza	LQWYGPIIEIENENGGGELLKRDCLIRRHLKVIMVVDGDEEEEVAHVCPITCVEPLSGECLIALREGKIGTLWTPNHVEDLRWRVKIDEDQSR
Ga0307517_100302936	3300028786	Ectomycorrhiza	VRSLRFEIESGSGELLKRDCPIRRHLKVLMEVDEDEEEEGAHVCPITCAQLLSREILIALREGKIGTLWTPDHMDN
Ga0307517_100707863	3300028786	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIGILWTPDQVDDLR
Ga0307517_100750852	3300028786	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIGILWTPDQVDDLRXRVEIDEDQSXRI
Ga0307517_100794302	3300028786	Ectomycorrhiza	MQWYGPIIEIKIGNGGGELTKGDCPIRRHLKVIMVIDGDEEEKIAHVYPITCAELISGGMIIALWEGKIGTLWTPDHVDN
Ga0307517_100947602	3300028786	Ectomycorrhiza	MQWYGPIVEIWTKNGGGELLKRDCPMKRHLKVIMVVDGDEEEEGTYVCPITCPELLSGGIFIALREGKIGTLLTPDHVDNYKCRVKIDEDQS
Ga0307517_101311901	3300028786	Ectomycorrhiza	MQWYDLIVEIVTKNGGGALTKRDCPIRRHLKVIMVVDGDEEEEGTHVYLITYVELLNKEIFYLPNEGKIRTLWTLDHVDDLRWRVEIDEDQS
Ga0307517_101953821	3300028786	Ectomycorrhiza	VTKNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNKEIFYLPNEGKIGTLWTPDYVDDLRWRVEIDEDQS
Ga0307517_102052321	3300028786	Ectomycorrhiza	MVRSLRFVIKSGDGELLKRDCPIRRHLKVIMVVDGNEEEEDSYVCPITCAELLSKEILMALKEGKIRTLWTPGYVDNLRWRVKID
Ga0307517_104037131	3300028786	Ectomycorrhiza	VTRNSGGELTKGDCPIRRHLKVIIVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEINEDQS
Ga0307517_105172941	3300028786	Ectomycorrhiza	MQWYGSIVEIVTRNDGGELTKGDCPIRRHLKVIMVVDGDDEEKGAHVYPITCVELLNGEIFYLPNEGKIRTLWTPDHVDDLR
Ga0307517_106157241	3300028786	Ectomycorrhiza	GELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDYVDDLRWRVEIDEDQS
Ga0307515_100042899	3300028794	Ectomycorrhiza	MQWYDLIIEIENENGGGELLKRDCLIRRHLKVIMVVDGDEEEEEVTHVFPITCVEPLSEKCLIALRGGKIGTLWTPDHVDDLRWRVEIDEDQSRRI
Ga0307515_1002417610	3300028794	Ectomycorrhiza	MQWYGFVIKSGDGELLKRDCPIRRHLKVIMVVDENEEEEDSYVCLITCAELLNKDILMALKEGKIGTLWTPGYVDNLRWRVKID
Ga0307515_100355445	3300028794	Ectomycorrhiza	MQWYGLIIEIETKSGGGELTKGDCPIRRHLKVIMVVDGDEEEKVAHAYPIMGAKLLSGEKFELPXXKAKIGTLWTPGYVDNYRCRVKIDEDQS
Ga0307515_100469603	3300028794	Ectomycorrhiza	MQWYGPIVEIEIENGGGELLKRNCPMRRHLKVIMVVDGDEEGENAHVCPITCAELLSGEILIALREGKIGIIWTPDHVDDLRWRVEIYEDQSXRI
Ga0307515_101134323	3300028794	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDKEEEGAHVYPITCAELLNREIFYLSNEGKIGTLWTPDHVDDLRWRVEIDEDQS
Ga0307515_101605073	3300028794	Ectomycorrhiza	MQWYGPIIEIVTRNGGGDLTKGDCPIRRHLKVIMVVDGDNEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEIDEDQS
Ga0307515_102298171	3300028794	Ectomycorrhiza	VTKNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDYVDDLRWRVEIDEDQS
Ga0307515_102495962	3300028794	Ectomycorrhiza	MQWYGPIIEIEAENSGGELLKRDCPIRRHLKVITVVDGDEEEEVTHVCPITCVELLSGEILIALREGKIVILWTPDHVDDLRWRVEIDEDQS
Ga0307515_103444622	3300028794	Ectomycorrhiza	RNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIGILWTPDQVDDLR
Ga0307515_104384291	3300028794	Ectomycorrhiza	MQWYGSIVEIVTRNDGGELTKGDCPIRRHLKVIMVIDGDDEEKGAHVYPITCVELLNGEIFYLPNEGKIRILWTPDHVDDLR
Ga0307515_106984271	3300028794	Ectomycorrhiza	MQWYGLIIEIETENGAGELLKRDCPIRRHLKGVMVVGGDEEEEIAHACAELLYGEILIALREGKIRTLWTPDHVDDLRWRVETNEDQS
Ga0307511_100089066	3300030521	Ectomycorrhiza	MQWYGLIIEIENENGGGELLKRDCLIRRHLKVIMVVDGDEEEEEVTHVFPITCVEPLSEKCLIALRGGKIGTLWTPDHVDDLRWRVEIDEDQSRRI
Ga0307511_100235103	3300030521	Ectomycorrhiza	MQWYGSIVEIVTRNGGGELTKGDCPIKRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIRTLWTPDHVDDLR
Ga0307511_100375814	3300030521	Ectomycorrhiza	LRPKNGGGELLKRDCLIRRHLKVIMVVNGDEEEEIAHVCPITCAELLSGEMLIALKEGKIGILWTPSHVDN
Ga0307511_100976422	3300030521	Ectomycorrhiza	MEWCGPIVEIETKNGGGELLKRDYPIRRHLEVIIVVDGDEEEEITHICLITCAELLSGDFLVALKEGKIGTLWTPDQLDN
Ga0307511_101126061	3300030521	Ectomycorrhiza	MQWYGPIIEIEAENGGGELLKRDCPIRRHLKVITVVDGDEEEEVTHVCPITCVELLSGEILIALREGKIGILWTPDHVDDLRWRVEIDEDQS
Ga0307511_101628901	3300030521	Ectomycorrhiza	MQWYGPIVEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIGILWTPDQVDDLR
Ga0307511_102114841	3300030521	Ectomycorrhiza	MQWYGPIIEIKIGNGGGELTKGDCPIRRHLKVIMVIDGDEEEKIAHVYPITCAELISGGMIIALWEGKIGTLWTP
Ga0307511_102231871	3300030521	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCQIKRHLKVIMVVDGDEEEEGAHVYPITCVELLNREIFYLPNEGEIGTLWTPDHVDDLR
Ga0307511_102516001	3300030521	Ectomycorrhiza	MQWYGLIIEIVTRNGGGALTKRDCPIRRHLKVIMVVDGDDEEEGAHVYPITYVELLNKEIFYLPNEGKIRTLLTLDHVDDLRWRVEIDEDQS
Ga0307512_102570891	3300030522	Ectomycorrhiza	MQWYGPIIEIEIESGGGELTKRDYPIRRQLKFIMVVDGDEEKEGAHVYPITCAELLNGEIVYLPNEGKIGTLWTPDQVDDLRWRVKIDEDQS
Ga0307512_102762932	3300030522	Ectomycorrhiza	MTRNGGGKLTKGDCPIRRHLKVIIVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEINEDQS
Ga0307513_100065992	3300031456	Ectomycorrhiza	MQWYGPIIEIETKNGGGELLKRDCPIRRHLKVIIVVDEDKEEEEEITHICPITCAELLSGDFLVALKKDKIGTLWTPNQLDN
Ga0307513_100172297	3300031456	Ectomycorrhiza	LQWYDPIIEIENENGGGELLKRDCLIRRHLKVIMVVDGDEEEEVAHVCPITCVEPLSGECLIALREGKIGTLWTPNHVEDLRWRVKIDEDQSR
Ga0307513_100393513	3300031456	Ectomycorrhiza	MQWYGQIIEIKAENGGGELLKRDCPIRRHLKIITVVDGDDEEEVTHVCPITCVELLNGEILIALREGKIGILWTPDQVDDLRWRVEIDEDQS
Ga0307513_100452401	3300031456	Ectomycorrhiza	MQWYGLIIEIVTRNGGGALTKKDCPIRRHLKVIMVVDGDDEEEGAHVYPITYVELLNKEIFYLPNEGKIRTLLTLDHVDDLRWRVEIDEDQS
Ga0307513_100648262	3300031456	Ectomycorrhiza	MQWYGFVIKSGDGELLKRDCPIRRHLKVIMVVDENEEEEDSYVCPITCAELLNKDILMALKEGKIGTLWTPGYVDNLRWRVKID
Ga0307513_101290601	3300031456	Ectomycorrhiza	GGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNREIFYLSNEGKIGILWTPDHVDNLR
Ga0307513_101308672	3300031456	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVNGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIGILWTPDQVDDLRXRVEIDEDQSXRI
Ga0307513_105576462	3300031456	Ectomycorrhiza	MQWYGPIVEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNEEIFYLPNEGKIGILWTPDQVDDLR
Ga0307509_100166262	3300031507	Ectomycorrhiza	MQWYGPIVEIWTKNGGGELLKRDCPMKRHLKVIMVVDGDEEEEGAYVCPITCPELLSGGIFIALREGKIGTLLTPDHVDNYKCRVKIDEDQS
Ga0307509_100571403	3300031507	Ectomycorrhiza	MQWYGLIVEIWTESGGGEVLKRDCPIMGHLKVIMVVDGDEEEVTHVCPIMCVELLGGNFSVALREGKIGTLWRPDHVDDLRWRVEIDEDQS
Ga0307509_100627843	3300031507	Ectomycorrhiza	MQWYDLIVEIVTRNGGGALTKRDCPIMRHLKVIMVVDGDEEEEGAHVYLITYVELLNKEIFYLPNEGKIRTLWTLDHVDDLRWRVEIDEDQS
Ga0307509_100871663	3300031507	Ectomycorrhiza	MQWYGPIIEIEAENGGGELLKRDCPIRRHLKVITVVDGDEEEEVTHVCPITCVELLSGEILIALREGKIGILWTSDHVNDLRWRVEIDEDQS
Ga0307509_101628682	3300031507	Ectomycorrhiza	MQWYGPIIEIETRNSGGELLKRDCPIRRHLKVIIVVDEDKEEEEEITHICPITCAELLSGDFLVALKKGKIGTLWTPNQLDN
Ga0307509_101937591	3300031507	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLSNEGKIGTLWTPDHVDDLRWRVEIDKDQS
Ga0307509_107983941	3300031507	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVKLLNGEIFYLSNEGKIGTLWTPDHVDDLRWRVEIDKDQS
Ga0307508_100399633	3300031616	Ectomycorrhiza	MQWYGPIIEIEAENGGGELLKRDCPIRRHLKVITVVDGDEEEEVTHVCPITCVELLSGEILIALREGKIGILWTSDHVNDLR
Ga0307508_100548102	3300031616	Ectomycorrhiza	MLFXXFQTYFHLIXSFWLQWYGPIIEIENENGGGELLKRDCLIRRHLKVIMVVDGDEEEEEVTHVFPITCVEPLSEKCLIALRGGKIGTLWTPDHVDDLRWRVEIDEDQSRRI
Ga0307508_100716773	3300031616	Ectomycorrhiza	MQWYGPIIEIETRNGGGELLKRDCPIRRHLKVIIVVDEDKEEEEEITHICPITCAELLSGDFLVALKKDKIGTLWTPNQLDN
Ga0307508_101037424	3300031616	Ectomycorrhiza	MVRSLRFVIKSGDGELLKRDCLIRRHLKVIMVVDGNEEEEDSYVCPITCAELLSKEILMALKEGKIRTLWTPGYVDNLRWRVKID
Ga0307508_102233871	3300031616	Ectomycorrhiza	MQWYGPIIEIKNENGGGELLKRDCLIRRHLKVIMVVDGDEEEEVAHVCPITCVEPLSGECLIALREGKIGTLWTPDHVDDLRWRVEIDENQSRRI
Ga0307508_102449931	3300031616	Ectomycorrhiza	MQWYGLIIEIVTRNGGGALTKRDCPIRRHLKVIMVVDGDDEEEGAHVYPITYVELLNKEIFYLPNEGKIRTLLRLDHVDDLRWRVEIDEDQS
Ga0307508_103174891	3300031616	Ectomycorrhiza	MQWYSLIVEIVTRNGGSELTKGDCPIRRHLKVIMVVDGDDEEEGTHVCPITCVELLSGEILIALREGKIGTLWTPDHVDDLR
Ga0307508_103917631	3300031616	Ectomycorrhiza	LRFEIESGSGELLKRDCPIKRHLKVLMEVDEDEEEEGAHVCPITCAQLLSREILIALREGKIRTLWTPDHMDN
Ga0307508_105770711	3300031616	Ectomycorrhiza	MQWYGSIVEIVTRNDGGELTKGDCPIRRHLKVIMVIDGDDEEKGAHVYPITCVELLNGEIFYLPNEGKIRTLWTPDHVDDLR
Ga0307508_109159321	3300031616	Ectomycorrhiza	NGGGELTKGDCQIKRHLKVIMVVDEDEEEEGAHVYPITCVELLNREIFYLPNEGEIGTLWTPDHVDDLR
Ga0307514_100635114	3300031649	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNEEIFYLSNEGKIRTLWTPDHVDDLRWRVEIDEDQS
Ga0307514_101308561	3300031649	Ectomycorrhiza	VTRNGGGELTKGDCPIRRHLKVIIVVDGDDEEEGAHVYPITCIELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEINEDQS
Ga0307514_102174551	3300031649	Ectomycorrhiza	MQWYGSIVEIVTRNDGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNEEIFYLPNEGKIGILWTPDQVDDLR
Ga0307514_102817591	3300031649	Ectomycorrhiza	MQWYGPIVEIEIENGGGELLKRNCPMRRHLKVIMVVDGDEEGENAHVCPITCAELLSGEILIALREGKIGIIWTPDHVDDLRWRVEIYEDQS
Ga0307514_103018191	3300031649	Ectomycorrhiza	MQWYGQIIEIKAENGGGELLKRDCPIRRHLKIITVVDEDDEEEVTHVCPITCVELLNGEILIALREGKIGILWTPDQVDDLRWRVEIDEDQS
Ga0307514_103377131	3300031649	Ectomycorrhiza	VTKNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEIDDDQS
Ga0307516_100779272	3300031730	Ectomycorrhiza	LRFETGSGGGELLKRDCPIRRHLKVIMVVDEDEEEEGAHVYPITCAELLSKEIGIALREGKIGILWTLDHMDDLRWRVEIDEDQS
Ga0307516_101289324	3300031730	Ectomycorrhiza	MQWYGPIVKIVTRNGGGELTKGDCPIRRHLKVIMVVDGNDKEEGAHVYPITCVELLNREIFDLPNEGKIGILWTPDQVDDLRXRVEIDEDQSXRI
Ga0307516_101505903	3300031730	Ectomycorrhiza	MQWYGLIIEIMTRNGGGALTKRDCPIRRHLKVIMVVDGDDEEEGAHVYPITYVELLNKEIFYLPNEGKIRTLLTLDHVDDLRWRVEIDEDQS
Ga0307516_101745111	3300031730	Ectomycorrhiza	VTRNGGGELTKGDCPIRRHLKVIIVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEINEDQS
Ga0307516_101756101	3300031730	Ectomycorrhiza	MQWYGPIIEIEAENSGGELLKRDCPIRRHLKVITVVDGDEEEEVTHVCPIMCVELLSGEILIALREGKIGILWTSDHVNDLRWRVEIDEDQS
Ga0307516_102571511	3300031730	Ectomycorrhiza	VTKNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTPWTPDHVDDLRWRVEIDEDQS
Ga0307516_103897991	3300031730	Ectomycorrhiza	MVRSLRFVIKSGDGELLKRDCPIRRHLKVIMVVDGNEEEEDSYVCPITCAELLSKEILMALKEGKIRTLWTPGYV
Ga0307516_105193731	3300031730	Ectomycorrhiza	MQWYDPIVEIVTRNGGGELTKGDCPIRRHLKVIMMVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRRRVEIDDDQS
Ga0307516_106131231	3300031730	Ectomycorrhiza	MQWYGLIIEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIGILWTPDQVDDLR
Ga0307518_100083975	3300031838	Ectomycorrhiza	LRAKNGGGELLKRDCLIRRHLKVIMVVNGDEEEEIAHVCPITCAELLSGEMLIALKEGKIGILWTPSHVDN
Ga0307518_100307563	3300031838	Ectomycorrhiza	MQWYGPIIEIETRNGGGELLKRDCPIRRHLKVIIVVDEDKEEEEEITHICPITCAELLSGDFLVALKKGKIGTLWTPNQLDN
Ga0307518_101143591	3300031838	Ectomycorrhiza	WYGSIVEIVTRNDGGELTKGDCPIRRHLKVIMVIDGDDEEKGAHVYPITCVELLNGEIFYLPNEGKIRTLWTPDHVDDLR
Ga0307518_103186031	3300031838	Ectomycorrhiza	MQWYDLIVEIVTKNGGGALTKRDCPISRHLKVIMVVDGDEEEEGTHVYLITYVELLNKEIFYLPNEGKIRTLWTLDHVDDLRWRVEIDEDQS
Ga0325403_10054883	3300032354	Xylem	MVSIIEIETRNGGGELLKRDCQIKRHLKVIIVVDGDEEEEITHICPITCVELLSGDFLVALKEGKIGTL
Ga0325403_10121478	3300032354	Xylem	VIKSGDGELLKRDCPIRRHLKVIMVVDGNEEEEDSYVCPITCAELLSKEILMALKEGKIGTLWTPGYVDNLRWRVKID
Ga0325403_101657910	3300032354	Xylem	MQWYGLIIEIENKNGGGELLKRDCLIRRHLKVIMVVDGDEEEEVTHVCPITCVELLGECLIALRKGKIRTLWIPDHVDDLR
Ga0325403_10169472	3300032354	Xylem	MQWYGPIVEIVTRNGGGELTKGDCPIRRHLKVIMVVDGDDEEKGAHVYQITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEIDEDQS
Ga0325403_10201073	3300032354	Xylem	VTRNSGGELTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNKGKIGTLWTPDHVDDLRWRVEIDEDQS
Ga0325403_10234144	3300032354	Xylem	MQWYGLIIEIEIENSGGELTKRDCLMRRHLKVIMVVDGDEEEEITHVXPITCTELLSGEMIIALREDKIGTLRTPDHVDDLRWRVEIDEDQSXXI
Ga0325403_10289566	3300032354	Xylem	MQWYGPIVEIVTRNGGSELTKGDCPIMRHLKVIMVVDGDDEEKGAHVYPITCVELLNGEIFYLPNEGKIGTLWTPDHVDDLRWRVEIDKDQS
Ga0325403_10518793	3300032354	Xylem	MQWYGPIVEIMTRNGGGELKKLDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNEEIFYLPNEGKIGILWTSDQVDDLR
Ga0325401_10283683	3300032355	Xylem	MQWYGPIVEIVTRNGGSELTKGDCPIMRHLKVIMVVDGDDEEKGAHVYPITCVELLNGEIFYLPNEGKIGTLWTPDHVDDLRWRVEIDKDQSXRI
Ga0325400_10132864	3300032374	Xylem	MQWYGPIIEIETKNSDGELTKRDCMMRRHLKVIMVVDGDEEEEITHVXPITCVELLNGEIFYLPNEGKIETL
Ga0325405_100028846	3300032389	Xylem	MQWYGPIIEIETESDGGELKKRDYPIKRQLKFIMVVDGDEEKEGAHVYPITCAELLNGKIVYLPNEGKIGTLWTPDQVDDLRWRVKIDEDQS
Ga0325405_10029363	3300032389	Xylem	MIKSGDGELLKRDCPIRRHLKVIMVVDGNEEEEDSYVCPITCAELLSKEILMALKEGKIGTLWTPGYVDNLRWRVKID
Ga0325405_10127062	3300032389	Xylem	MVSIIEIETRNGGGELLKRDCQIRRHLKVIVVVDGDEEEEITHICPITCAELLSGDFLVALKEGKIETLWTPDQLDN
Ga0325405_101579010	3300032389	Xylem	MQWYGPIVEIVTRNGGSELTKGDYPIMRHLKVIMVVDGDDEEEGAHVYPITCVELLNGEIFYLPNEGKIGTLWTPDHVDDLRWRVEIDKDQS
Ga0307507_100302574	3300033179	Ectomycorrhiza	MQWYGLIIEIENENGGGELLKRDCLIRRHLKVIMVVDGDEEEVTHVFPITCVEPLSEECLIALRGGKIGTLWTPDHVDDLRWRVEIDEDQSRRI
Ga0307507_100411445	3300033179	Ectomycorrhiza	MQWYGPIVEIWTESGGGEVLKRDCPIMGHLKVIMVVDGDEEEVTHVCPIMCVELLGGNFSVALREGKIGTLWRPDHVDDLRWRVEIDEDQS
Ga0307507_101078743	3300033179	Ectomycorrhiza	MQWYGPIIEIEAENGGGELLKRDCPIRRHLKVITVVDGDEEEEVTHVCPIMCVELLSGEILIALREGKIGILWTSDHVNDLRWRVEI
Ga0307510_100171503	3300033180	Ectomycorrhiza	MQWYGPIIEIVTRNGGGELTKEDCPIMRHLKVIMVVDGDDKEKGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEIDEDQS
Ga0307510_100727261	3300033180	Ectomycorrhiza	MQWYGLIIEIENENGGGELLKRDCLIRRHLKVIMVVDGDEEEEEVTHVFPITCVEPLSEECLIALRGGKIGTLWTPDHVDDLRWRVEIDEDQSRRI
Ga0307510_102268341	3300033180	Ectomycorrhiza	MQWYGPIVDIVTKNGGGKLTKGDCPIRRHLKVIMVVDGDDEEEGAHVYPITCVELLNREIFYLPNEGKIGTLWTPDHVDDLRWRVEIDDDQS
Ga0325419_136257_181_429	3300034389	Leaf	VTRNSGGELTKEDCPIRRHLKVIMVVDGDEEEEGAHVYPITCVELLNGEIFYLPNKGKIGTLWTPDHVDDLRWRVEIDEDQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102185

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences