NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102210

Metagenome / Metatranscriptome Family F102210

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102210
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 41 residues
Representative Sequence ASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Number of Associated Samples 10
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 7
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral
(50.495 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal corpus
(100.000 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.42%    β-sheet: 0.00%    Coil/Unstructured: 57.58%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF14752RBP_receptor 1.98
PF00168C2 1.98
PF00335Tetraspanin 1.98
PF00620RhoGAP 0.99
PF07524Bromo_TP 0.99
PF10191COG7 0.99
PF04991LicD 0.99
PF06419COG6 0.99
PF00687Ribosomal_L1 0.99
PF05577Peptidase_S28 0.99
PF000017tm_1 0.99
PF12946EGF_MSP1_1 0.99
PF13540RCC1_2 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0081Ribosomal protein L1Translation, ribosomal structure and biogenesis [J] 0.99
COG3475Phosphorylcholine metabolism protein LicDLipid transport and metabolism [I] 0.99


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
CoralHost-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral50.50%
CoralHost-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral44.55%
Coral TissueHost-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral Tissue4.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300013948Coral microbial communities from a home aquarium in Belgium - AM-T0-control AHost-AssociatedOpen in IMG/M
3300022595Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T2 (Eukaryote Community Metatranscriptome)Host-AssociatedOpen in IMG/M
3300022596Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T1 (Eukaryote Community Metatranscriptome)Host-AssociatedOpen in IMG/M
3300022597Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T3 (Eukaryote Community Metatranscriptome)Host-AssociatedOpen in IMG/M
3300022598Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C1 (Eukaryote Community Metatranscriptome)Host-AssociatedOpen in IMG/M
3300022599Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C2 (Eukaryote Community Metatranscriptome)Host-AssociatedOpen in IMG/M
3300022600Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C3 (Eukaryote Community Metatranscriptome)Host-AssociatedOpen in IMG/M
3300027103APAL control metatranscriptome co-assemblyHost-AssociatedOpen in IMG/M
3300027264APAL treatment metatranscriptome co-assemblyHost-AssociatedOpen in IMG/M
3300027507APAL treatment+control metatranscriptome co-assemblyHost-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0116699_101294613300013948Coral TissueLVALSKLKVNVRNSDWFIALFAPVVIGLSNNFGFGFSTVI*
Ga0116699_102299213300013948Coral TissueSSELQVIVKNCDWFIALPAPVIGRSNCFGFGFSTLI*
Ga0116699_103682913300013948Coral TissueTLHFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFGFSTVI*
Ga0116699_106563423300013948Coral TissueRDFFRVSSELQLIAKNCDWFIALSAAVVIGRSNYFGFGFSTVI*
Ga0116699_109468323300013948Coral TissueMRDFSRALNWLREISRNSDWFIALFVLVVIGGSNYFEVGFSLGVNNT*
Ga0215184_100651013300022595CoralCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSDCFGFGFPTVI
Ga0215184_111639723300022595CoralVAPGTRDFSRAVSELQRIARNCDWLIVLFVPVVIGRNDYFGFGFSTVI
Ga0215184_112713613300022595CoralTRDFYRASSELQVIARNCDWFIALAAPVVIGRSNCFGFGFSTVI
Ga0215184_115044113300022595CoralHFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFRFSTVI
Ga0215184_116152423300022595CoralRVLSEVQVIARNCDWSIALFAPIVIGRSNPFGFGFSTVI
Ga0215184_122133213300022595CoralSDFRLSKSQVIARHFDWFIELFVLVVVGRSNCFGFGFSTVI
Ga0215184_122360213300022595CoralSSELQVIAKNCDWFIALPAPVVIVQSNCFGFGFSTVI
Ga0215183_102528123300022596CoralELQVIARNCDWFIALFVPVVIGRSYCFGFGFSTVI
Ga0215183_102688633300022596CoralFSRALSELQIIARNCDWFIVLFAPVVIGRNNCFGFGFSTVV
Ga0215183_110977823300022596CoralSELQVIARNCDWFIALFAPVVIGRSNCFGFGFSTVI
Ga0215183_114960213300022596CoralRDFSRASSELHVIARNCDWFIALSAPVVIGRSNCFGFGFSTVI
Ga0215183_117887013300022596CoralELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215183_117994613300022596CoralELQVIARNCDWFIALPAPVVIGRSNCFDFGFSTVI
Ga0215183_120278513300022596CoralASSGLQVIARNCDWFIALPAPVVIGRSNCFGFGFPIVI
Ga0215185_103077013300022597CoralFSRALSKFQIIARNCDWFIALFAPVVIGRSNCFGFGYLTVI
Ga0215185_109119413300022597CoralKPKPIAPCTRDFSRVSSELQVIARNYDWFMELFVPVVIGQSNCFGFGFLTVIRKPL
Ga0215185_114030713300022597CoralRGSSHASSELQVIVRNCDWFIALFAPVVIGRNNCFGCGFSTVI
Ga0215180_100736013300022598CoralELHVIARNSDWFMALFVPVVIGQSDYLGFGFSTVISKPLYC
Ga0215180_102339513300022598CoralSELQVIVSNCDWFIALFAPVVIGRSNCFGFGFSTVI
Ga0215180_102855113300022598CoralRDFSRASSELQVIARNYDWFISLPAPIVIGRSNCFGFGFATVI
Ga0215180_103369723300022598CoralRQFFNRDFSRASSELQVIARNYDWFIALSAHVVIGRSNCFGFGFSTVI
Ga0215180_104784213300022598CoralASSELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215180_106011323300022598CoralFSRASSELQVIARNCDWSMELFVPVVIGQSNCFGFGFSTVI
Ga0215180_106302923300022598CoralMRNRKQKPIATCTRDFSRPLSNLQVIAKNSDWFIALFAPLVIGLRYYLGFGFSTVI
Ga0215180_110556723300022598CoralRALSELQIIARNCDWFIALFAPVVIGRSDCYGFGFSTVI
Ga0215180_112246213300022598CoralKLQVIARNCDWFIALFVAVVIGRSNCFGFGFGFWTVI
Ga0215180_112628513300022598CoralSELQVIARNCDWFMALFVPVVIGRSYCFGFGFSTVI
Ga0215180_115200113300022598CoralRASSELQVIARNCDWFMALFVPVVIGRSNCFGFGFSTVI
Ga0215180_118896413300022598CoralDELQIIARNYDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215180_125645913300022598CoralATAMAPFTRDFSRALSNLQIMARNSDWFTALFTPVVIGRSYYFGIDFSTAI
Ga0215180_125697613300022598CoralCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSYCFGFGFPTVI
Ga0215181_102235943300022599CoralCTSSKLQVIARNCDWFMALFVPVVIGQSNCFGFGFSIVI
Ga0215181_103562113300022599CoralSELQLIARNCDWFMALFVPVVIGRSNCFGFGFSTVI
Ga0215181_103966713300022599CoralAAIYEKGLCTRDFSRASSELQVIAGNCDWFIALFVPVVIGWSNCFGFGFTTVI
Ga0215181_108187513300022599CoralDFSRASSELQVIARDSDWFIALSTPVVIGQSNCFGFGFSTVI
Ga0215181_111844313300022599CoralSELQVIPRNCDWFIALSAPVVIGRSNYFFGFGFSTVI
Ga0215181_112288313300022599CoralRDFSRAFSKFQMIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0215181_112840513300022599CoralRASSELQVIAKNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215181_113848723300022599CoralARDFSRASSELQVIARNCDWFMALFVPVVIGRSYCFGFGFSTVI
Ga0215181_117070133300022599CoralASSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_103563033300022600CoralSSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_111498613300022600CoralASSELQVIARNSDWFMALFVPFVIGQSDYFGFGFSTVI
Ga0215182_112907213300022600CoralPCTRDFSRASSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_117153713300022600CoralELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0215182_120402413300022600CoralKPIAPRTRDFYRGLSELQIIARNCDWFIVLFAPVVIGRNNCFGFGFSTVV
Ga0255581_100421913300027103CoralRDFSRASSELQVIARNCDWFIAPFVPLVIGRSNCFGFGFSTVI
Ga0255581_101503123300027103CoralMVHGDFSRASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFATVI
Ga0255581_102455713300027103CoralEFQVIARNYDWFIALSAPVMIGWSNCFGFGFLTVI
Ga0255581_103816323300027103CoralGALSKLQVIARNCDWFIALFAPVVIGPSNCFGFGFSTVI
Ga0255581_107284713300027103CoralAKPKPIARCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSDCFGFGFPTVI
Ga0255581_109257113300027103CoralRDFSRAWSELQVIARNCDWFTALFVPVVIGRSNCFG
Ga0255581_110081813300027103CoralISRASGELQVIARNCDWFTELFVPVVIGRSNCFGFGFSTVI
Ga0255581_110841113300027103CoralTSELQVIARNCDWFMALFVPVVIDRSNCFGFGFSTVI
Ga0255581_111430413300027103CoralRGFSRASSELQVIARNCDWSMELFVPVVIGQSNCFGFGFSTVI
Ga0255581_111529013300027103CoralTRDFSRASSELQVIARNSDWFMALFVPVVIGQSDYFGFGSSTVI
Ga0255581_112002213300027103CoralKLQVIARNRDWFMALFVPVVIGRSNCFAFGFSTVI
Ga0255581_112434023300027103CoralTRDFSRALSELQIIARNCDWFIVLFVPVVIGRNNFFGFDFSTVI
Ga0255581_112794823300027103CoralDFSRASSELQVIARNCDWFIALFVPVVIGRSNCFGFGF
Ga0255581_112972923300027103CoralCFEKVTCIITRNYDWFIALVAPVVIGRSNDFGIGFWTVI
Ga0255581_113294213300027103CoralRALNELQVIARNCEWFIALFAPAVIGRSNCFGFGFSTVI
Ga0255581_113498223300027103CoralSELQVIARNCDWFITLFAPVVIGRSNCFGFGFSTVI
Ga0255581_113793913300027103CoralRASRELQVIARNCDWFIALFVPVVIGRNNCFGFGFSTVI
Ga0255581_114294813300027103CoralHFSRASSELQVLARNCDWFIALSAPVVIGRSNRLGFGFSTVI
Ga0255581_116841713300027103CoralELQVIAGNCDWFIALPAPIVIGRSHCFGLGFSTVI
Ga0255581_117071213300027103CoralRYFSCVFSKLQEIPGNSDWFIALFTPVVIGRSNYFGIGFSMVI
Ga0255581_118402213300027103CoralTRDFSRASGELQVIGRNFDWFMELFVPVVIGRSNCFGLGFSPVI
Ga0255580_100701713300027264CoralTKTDRTMSHDFSRDTSELQVIARNCDWFIALPAPLVIGRSNCFGFDFSTVI
Ga0255580_100936713300027264CoralIAPCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSYCFGFGFPTVI
Ga0255580_101693313300027264CoralSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0255580_105019713300027264CoralASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0255580_105731713300027264CoralSELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0255580_106007713300027264CoralSGELQVIARNCDWFIALFVPIVIGRSNCFGFGFSTVILKPL
Ga0255580_106244413300027264CoralMYAXFFRASSEFQVIARNSDWFMTLFAPVVIGQSDYFGFGFSTVIXK
Ga0255580_108807213300027264CoralAIYEKGLCTRDFSRASSELQVIAGNCDWFIALFVPVVIGWSNCFGFGFTTVI
Ga0255580_110088013300027264CoralSELQVIARNCDWFITLPAPVAIGRNNCFGFRFSTVI
Ga0255580_112854113300027264CoralMRDFSRALSKFQIIARNCYWFIALFVPVVIGRSNCFGFSTVI
Ga0255580_112919613300027264CoralLSELQAIARNCDWFIALPAPAVIGQSNCFGFGFLTVI
Ga0255580_112967713300027264CoralRTLHFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFRFSTVI
Ga0255580_113789013300027264CoralMPTKFYFSRALNKSQLISKNSDWFMALFAPAVIGRSNCFGIGFSTVT
Ga0255580_118825913300027264CoralALSKLHVMASNSDWFIALFAPAVIGCSNHFGIVFLQVI
Ga0255582_101157853300027507CoralENQNQNQSHNDFSRASSELQVIATICDWFITLPPPVVIGRSNCFGSGFSTVI
Ga0255582_103116133300027507CoralDFSRASSELLIIGRNCDWFIVLFVPVVIGRNNCFGFGFSTVI
Ga0255582_104340913300027507CoralSKLQVIARSSDWLIALFAPAVIGPINNFGVGFSTAI
Ga0255582_105049813300027507CoralRASSELQLIVRNCDWFIALSAAVVIGRSNCFGFGFSTVI
Ga0255582_106181313300027507CoralMHGFSGALSKLQVIAGNSDWLIELFAPAVIGRSNYFGIGFSMEL
Ga0255582_106542123300027507CoralGELQMIARICDWFIALLVPVVIGRSNCFGFGFSTVI
Ga0255582_108788213300027507CoralTHDFSCASEGLQVIARNCDWFMELFVPVVIGRSNCFGFGFSTVI
Ga0255582_108859113300027507CoralPIANFSRVLSKLKEIARNSDYFIALPAPAAISRSNQFGIGFSTVI
Ga0255582_111857213300027507CoralAPCTRDFSRVSSELQVIPRNCDWFIALFVLVVIGRSNCFACGFSTVI
Ga0255582_112677313300027507CoralRLPVIATNSDWFIALFAHVVIGRSNSFSIGFTTYVLKPF
Ga0255582_113055413300027507CoralSELQVIARNCDWFIALFVPVVIGRCNCFGFGFSTVI
Ga0255582_114041223300027507CoralFHFPTNAEPPCTRGFSHASSELQVIAGSCGWFVALPAPVVVGRSDCFGFGFSTVI
Ga0255582_115727913300027507CoralEFQVIARNSDWFMALFVPVVIGQSDYFGFGSSTVI
Ga0255582_117645513300027507CoralSELQVIARNYDWFIALAAPVVIGRSNCFGFGFSTVI
Ga0255582_120297313300027507CoralPRTRDFSRALSELQIIARNCDWFIVLFGRNNCFGFGFSTVV
Ga0255582_122069713300027507CoralSELQVIARNCDWFIALFAPVVIGRSNCSGFGFSTVI


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