Metagenome Family F102299

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102299
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	89 residues
Representative Sequence	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE
Number of Associated Samples	43
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.89 %
% of genes near scaffold ends (potentially truncated)	30.69 %
% of genes from short scaffolds (< 2000 bps)	92.08 %
Associated GOLD sequencing projects	38
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.030 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (44.555 % of family members)
Environment Ontology (ENVO)	Unclassified (72.277 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (94.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.04% β-sheet: 15.65% Coil/Unstructured: 71.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03795	YCII	5.94
PF09900	DUF2127	2.97
PF12680	SnoaL_2	1.98
PF00903	Glyoxalase	1.98
PF13418	Kelch_4	0.99
PF13376	OmdA	0.99
PF00856	SET	0.99
PF01641	SelR	0.99
PF01740	STAS	0.99
PF12146	Hydrolase_4	0.99
PF13517	FG-GAP_3	0.99
PF13884	Peptidase_S74	0.99
PF02517	Rce1-like	0.99
PF00082	Peptidase_S8	0.99
PF07719	TPR_2	0.99
PF06739	SBBP	0.99
PF00202	Aminotran_3	0.99
PF05157	T2SSE_N	0.99
PF01544	CorA	0.99
PF02790	COX2_TM	0.99
PF01425	Amidase	0.99
PF13365	Trypsin_2	0.99
PF03061	4HBT	0.99
PF07885	Ion_trans_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.94
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.99
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.99
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	0.99
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.02 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.02 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.03 %
Unclassified	root	N/A	1.98 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.99 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	80.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %
Unclassified	root	N/A	1.98 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.99 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	80.20 %
Unclassified	root	N/A	1.98 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	72.28 %
Unclassified	root	N/A	1.98 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.99 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.99 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	71.29 %
Unclassified	root	N/A	1.98 %
Verrucomicrobia bacterium 13_1_20CM_4_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_55_9	0.99 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.99 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.99 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	71.29 %
Unclassified	root	N/A	1.98 %
Pseudolysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudolysobacter	0.99 %
Verrucomicrobia bacterium 13_1_20CM_4_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_55_9	0.99 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.99 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.99 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	71.29 %
Unclassified	root	N/A	1.98 %
Pseudolysobacter antarcticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudolysobacter → Pseudolysobacter antarcticus	0.99 %
Verrucomicrobia bacterium 13_1_20CM_4_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_55_9	0.99 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.99 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17035655	All Organisms → cellular organisms → Bacteria	4279	Open in IMG/M
3300000890\|JGI11643J12802_11679246	All Organisms → cellular organisms → Bacteria	3163	Open in IMG/M
3300000955\|JGI1027J12803_101267956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	561	Open in IMG/M
3300000956\|JGI10216J12902_112309872	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1321	Open in IMG/M
3300004114\|Ga0062593_102927420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300004633\|Ga0066395_10809233	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300005332\|Ga0066388_100635737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1684	Open in IMG/M
3300005332\|Ga0066388_100942578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1435	Open in IMG/M
3300005332\|Ga0066388_100961995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1423	Open in IMG/M
3300005332\|Ga0066388_101360846	All Organisms → cellular organisms → Bacteria → Proteobacteria	1229	Open in IMG/M
3300005332\|Ga0066388_101550188	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1162	Open in IMG/M
3300005332\|Ga0066388_101882147	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1067	Open in IMG/M
3300005332\|Ga0066388_103316601	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	822	Open in IMG/M
3300005332\|Ga0066388_108372623	Not Available	515	Open in IMG/M
3300005713\|Ga0066905_100570325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	953	Open in IMG/M
3300005764\|Ga0066903_100319517	All Organisms → cellular organisms → Bacteria	2477	Open in IMG/M
3300005764\|Ga0066903_100463100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2126	Open in IMG/M
3300005764\|Ga0066903_100532217	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300005764\|Ga0066903_100873538	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300005764\|Ga0066903_100899909	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1601	Open in IMG/M
3300005764\|Ga0066903_100941120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1570	Open in IMG/M
3300005764\|Ga0066903_101724279	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1194	Open in IMG/M
3300005764\|Ga0066903_101737008	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1189	Open in IMG/M
3300005764\|Ga0066903_101988062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1116	Open in IMG/M
3300005764\|Ga0066903_102265726	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1049	Open in IMG/M
3300005764\|Ga0066903_102417782	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1016	Open in IMG/M
3300005764\|Ga0066903_102472941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1005	Open in IMG/M
3300005764\|Ga0066903_102596989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	982	Open in IMG/M
3300005764\|Ga0066903_103865479	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	804	Open in IMG/M
3300005764\|Ga0066903_104172731	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	773	Open in IMG/M
3300005764\|Ga0066903_105343993	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300005764\|Ga0066903_106151781	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	628	Open in IMG/M
3300005764\|Ga0066903_107294486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	572	Open in IMG/M
3300005937\|Ga0081455_10005726	All Organisms → cellular organisms → Bacteria	13545	Open in IMG/M
3300009792\|Ga0126374_10148509	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1416	Open in IMG/M
3300010043\|Ga0126380_10116104	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300010043\|Ga0126380_11201732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300010046\|Ga0126384_10458640	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1090	Open in IMG/M
3300010046\|Ga0126384_10476796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudolysobacter → Pseudolysobacter antarcticus	1071	Open in IMG/M
3300010046\|Ga0126384_10642059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	934	Open in IMG/M
3300010047\|Ga0126382_10611006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	899	Open in IMG/M
3300010048\|Ga0126373_10266789	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300010048\|Ga0126373_10332303	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1526	Open in IMG/M
3300010048\|Ga0126373_10512549	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300010048\|Ga0126373_12102109	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300010358\|Ga0126370_10220445	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1449	Open in IMG/M
3300010358\|Ga0126370_10678063	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	902	Open in IMG/M
3300010358\|Ga0126370_11673504	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300010359\|Ga0126376_10542097	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1087	Open in IMG/M
3300010359\|Ga0126376_10841099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	901	Open in IMG/M
3300010360\|Ga0126372_10440714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1203	Open in IMG/M
3300010360\|Ga0126372_11627849	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685	Open in IMG/M
3300010360\|Ga0126372_11730394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	667	Open in IMG/M
3300010361\|Ga0126378_11058358	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	914	Open in IMG/M
3300010362\|Ga0126377_10918952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	938	Open in IMG/M
3300010362\|Ga0126377_11265489	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300010366\|Ga0126379_10492046	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1296	Open in IMG/M
3300010366\|Ga0126379_12034735	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300010366\|Ga0126379_12563922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	608	Open in IMG/M
3300010376\|Ga0126381_100428815	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1849	Open in IMG/M
3300010376\|Ga0126381_100670050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1481	Open in IMG/M
3300010376\|Ga0126381_100998590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1207	Open in IMG/M
3300010376\|Ga0126381_101088475	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1154	Open in IMG/M
3300010376\|Ga0126381_102275183	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300010376\|Ga0126381_103971260	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300010398\|Ga0126383_10167690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2070	Open in IMG/M
3300010398\|Ga0126383_10220011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1839	Open in IMG/M
3300010398\|Ga0126383_11642033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	732	Open in IMG/M
3300010398\|Ga0126383_12911990	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300010398\|Ga0126383_13077939	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300012948\|Ga0126375_10129203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1556	Open in IMG/M
3300012948\|Ga0126375_10409420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	983	Open in IMG/M
3300012948\|Ga0126375_11013166	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300012971\|Ga0126369_13010774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	552	Open in IMG/M
3300012971\|Ga0126369_13251337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300012987\|Ga0164307_11466382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300015371\|Ga0132258_11942933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1481	Open in IMG/M
3300015373\|Ga0132257_100292834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1954	Open in IMG/M
3300016294\|Ga0182041_10265168	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300016357\|Ga0182032_10333194	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300016357\|Ga0182032_11251041	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	640	Open in IMG/M
3300016404\|Ga0182037_11769703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300016445\|Ga0182038_10723176	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	868	Open in IMG/M
3300021560\|Ga0126371_10196359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2111	Open in IMG/M
3300021560\|Ga0126371_10859160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1052	Open in IMG/M
3300021560\|Ga0126371_11775761	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	739	Open in IMG/M
3300021560\|Ga0126371_12882337	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300031719\|Ga0306917_10514764	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	940	Open in IMG/M
3300031768\|Ga0318509_10760678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300031890\|Ga0306925_10957884	Not Available	876	Open in IMG/M
3300031890\|Ga0306925_11395551	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300031910\|Ga0306923_10607626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1227	Open in IMG/M
3300031912\|Ga0306921_11204151	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300031912\|Ga0306921_11364927	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	781	Open in IMG/M
3300031912\|Ga0306921_11982096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_55_9	621	Open in IMG/M
3300031947\|Ga0310909_11207749	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300031954\|Ga0306926_10317327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1928	Open in IMG/M
3300031954\|Ga0306926_11083059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	949	Open in IMG/M
3300032001\|Ga0306922_11708681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300032059\|Ga0318533_10249541	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1281	Open in IMG/M
3300032261\|Ga0306920_100963858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1244	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.03%
Plants	Host-Associated → Plants	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.31%
Loam	Environmental → Terrestrial → Soil → Loam	27.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	27.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	44.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	27.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01471180	2088090014	Soil	MNSGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFEAHREMTASDEWLFVDLRPVFRKPLSDVTPKFRRVSAERKFVE
JGI11643J12802_116792463	3300000890	Soil	MNSGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFEAHREMTASDEWLFVDLRPVFRKPLSDVTPKFRRVSAERKFVE*
JGI1027J12803_1012679561	3300000955	Soil	PINGVDYIFASVDRYLSGDECDQLHQKYFEAHREMTASDEWLFVDLRPVFRKPLSDVTPKFRRVSAERKFVE*
JGI10216J12902_1123098721	3300000956	Soil	MDTGDDEKTFLTHYSPINGVDYIFASYDRYLSGDECDQLHQKYFASHREMTAPDEWLFVDLRPVFRKPLSDVTPKFRRLSAERKFVE*
Ga0062593_1029274201	3300004114	Soil	MSNGGDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE*
Ga0066395_108092331	3300004633	Tropical Forest Soil	MSQRSCTLYGARRSVIECDVNTDDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPALRKPLSDVTPKFRRVSAEKKFVE*
Ga0066388_1006357371	3300005332	Tropical Forest Soil	MNTGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPNEWLFIDLRPAFRKPLSDVTAAFRRVSAEKKFVE*
Ga0066388_1009425782	3300005332	Tropical Forest Soil	VNTDNDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFASHREMTAPDEWLFVDLRPAFPKPLSDVTPKFRRLSAEGKFVE*
Ga0066388_1009619952	3300005332	Tropical Forest Soil	LNTGDDDKTFLTHYSPIHGVDYIFASLDRYLSGDECDQLHQKYFETHREMTASDEWLFVDLRPAFRKPLSDVTPKFRRVSAERKFVE*
Ga0066388_1013608463	3300005332	Tropical Forest Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPSEWLFVDLRPAFRESLSDVTPTFRRVSAEKKFVE*
Ga0066388_1015501882	3300005332	Tropical Forest Soil	MALADLKEGALRIESFRIPPRFAAHRAVWLNVHDMSNGGDGKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRKTTAPNEWLFVDLRPAFREPLSDVTPTFRRVSAEKKFVE*
Ga0066388_1018821471	3300005332	Tropical Forest Soil	TDDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKPLSDVPPKFRRLSAERKFVE*
Ga0066388_1033166011	3300005332	Tropical Forest Soil	MSNGDANKTFLTHYSPIKGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPNEWLLVDLRPAFRTPLSDVTPAFRRVSAEKNFVE*
Ga0066388_1083726232	3300005332	Tropical Forest Soil	NAAVNNGDDNKTFLTHYSPINGVDYIFASFDRYLSGDECDQLHQEYFESHREMTAPDERLFVDLRPAFCKALSDMTPKFRRLSAERKFVE*
Ga0066905_1005703252	3300005713	Tropical Forest Soil	LNAAVNTDDDKKTFLTHYSPINGVDYIFASFDRYLSGGESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKALSDVTPTFRRLSAERKFVE*
Ga0066903_1003195173	3300005764	Tropical Forest Soil	LNAAVNTDDDEKTFLTHYSPINGVDYIFASVDRYLSGEECDQLHQKYFDSHRQMTASNEWLFIDLRPAFQQPLSDVTPKFRRVSAERKFVE*
Ga0066903_1004631001	3300005764	Tropical Forest Soil	MNTDDDNKAFLTHYSPINGVDDIFASVERYLSGDECDQLHQKYFEAHREMTTSDEWLLVDLRPAFRKPLSDVTPKFRRVSAEKKFVE*
Ga0066903_1005322173	3300005764	Tropical Forest Soil	MNIGDDDKTFLTHYSPVNGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPDEWLFVDLRPALRKPLSDVTPKFRRVSAERKFVE*
Ga0066903_1008735383	3300005764	Tropical Forest Soil	MSNGADDKTFLTHYSPINGVDYIFASVDRYLSGDERDQLHQEYFESHREMTPPNEWLFIDLRPAFRKPLSDVAPKFRRVSAEKKFVE*
Ga0066903_1008999092	3300005764	Tropical Forest Soil	VSNGDDNKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPNEWLFVDVRPAFRKPLSNVTPTFRRVSAEKKFVE*
Ga0066903_1009411202	3300005764	Tropical Forest Soil	MNTGDDDKTFLTHYSPINGVDYIFASFDRYLSGDECDQLHQRYFQSHRKMTAPDEWLFVDLRPAFREPLPGATPKFRRLSTERKFVE*
Ga0066903_1017242792	3300005764	Tropical Forest Soil	MNTGDGDKTFLTHYSPINGVDYIFASVDRYLSGDECDRLHQKYFESHREMTEPDEWLFIDLRPAFRKSLPDVTPKFRRVSADRKFVE*
Ga0066903_1017370083	3300005764	Tropical Forest Soil	VIECDVNTDDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKSLSDVSPKFRRLSAERKFVE*
Ga0066903_1019880622	3300005764	Tropical Forest Soil	LNAAMNTGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRKMTAPDEWLFIDLRPAFRTPLSDVTPKFRRVSADRKFVE*
Ga0066903_1022657262	3300005764	Tropical Forest Soil	KTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHKKMTAPDEWLFIDLRPAFPKPLSDVTPKFRRVSADRKFVE*
Ga0066903_1024177822	3300005764	Tropical Forest Soil	VNTDAEQKTFLTHYSPINGVDYIFASFDRYLSGDECDQLHEIYFESHRAMTALDEWLLVDLRPAFRKPLSDVTPAFRRVSGEKKFVE*
Ga0066903_1024729411	3300005764	Tropical Forest Soil	LNAAVNTDADEKTFLTHYSPIDGVDYIFASFDRYLSGDESDQLHQKYFESHRKLTAPDEWLFVDLRPAFRKPLSDVTPTFRRLSAERKFVE*
Ga0066903_1025969893	3300005764	Tropical Forest Soil	MSNGDDNKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYSESHREMTAPNEWLFIDLRPAFRKPLSDVTPTFRRVSAEKKFVE*
Ga0066903_1038654792	3300005764	Tropical Forest Soil	MNTDDENKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTSPDEWLFVDLRPAFRKPLSDVTPMFRRLSAERKFVE*
Ga0066903_1041727311	3300005764	Tropical Forest Soil	KTFFTHYSPINGVDYIFASVDRYLSGEECDQLHQKYFESHNKMTAPNEWLVIDLRPAFRKPLPDVTPKFRRVSADRKFVE*
Ga0066903_1053439932	3300005764	Tropical Forest Soil	SPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPSFRRVSAEKKFVE*
Ga0066903_1061517812	3300005764	Tropical Forest Soil	LNGAVNTDDDEKTFLTHYSPIDGVDYIFASFDRYLSGDESDQLHQKYFESHRKITAPDEWLFVDLRPAFRKSLSDVTPKFRRLSTERKFVE*
Ga0066903_1072944861	3300005764	Tropical Forest Soil	MNTGDADKTFLTHYSPINGVDYIFASVERYLSGDECDQLHQKYSEAHREMAAPDEWLLVDLRPAFRKPLSDVTP
Ga0081455_100057265	3300005937	Tabebuia Heterophylla Rhizosphere	MNPDDDNKAFLTHYSPINGVDYIFASVERYLSGDECDQLHQEYFEAHREMTSSDEWLFVDLRPAFRKPLSDVTPKFRRVSAERKFVE*
Ga0126374_101485091	3300009792	Tropical Forest Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASTEWLFIDLRPAFRNRLSDVTPTFRRVSAEKKFVE*
Ga0126380_101161043	3300010043	Tropical Forest Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFRNPLSDVTPTFRRVSAEKKFVE*
Ga0126380_112017322	3300010043	Tropical Forest Soil	LNAAVNTDDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQEYFESHRKMTAPDEWLFVDLRPAFRKPLSDVTPKFRRLSTERKFVE*
Ga0126384_104586401	3300010046	Tropical Forest Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFQEALSDVTPKFRRVSAEKKFVE*
Ga0126384_104767962	3300010046	Tropical Forest Soil	VIPPRFAAHGAVWLNVHDMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFQE
Ga0126384_106420591	3300010046	Tropical Forest Soil	MSQRSCTLYGARRSVIECDVNTDDDEKTFLTHYSPINGVDYIFASFDRYLSGDETDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKALSDVTPKFRRLSAERKFVE*
Ga0126382_106110062	3300010047	Tropical Forest Soil	MNCRCPLDARRSHSQSGTLYGARRSVIECHHEYWRRRQNVYIFASLDRYLSGDECDQLHQKYFESHREMTAPNEWLFIDLRPAFRKPLSDVTAAFRRVSAEKKFVE*
Ga0126373_102667891	3300010048	Tropical Forest Soil	VIPPRFAAHGAVWLNVHDMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRKTTAPNEWLFVDLRPAFREPLSDVTPTFRRVSAEKKFVE*
Ga0126373_103323031	3300010048	Tropical Forest Soil	INGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRSAFQEALSDVTPKFRRVSAEKKFVE*
Ga0126373_105125494	3300010048	Tropical Forest Soil	MSNGGDDKTFLTHYSPINGVDYIFASVDHYLSGDECDQLHREYFESHREMTAPNEWLFIDLRPAFRKPLSDVAPKFRRVSAEKKFVE*
Ga0126373_121021091	3300010048	Tropical Forest Soil	MNTDDENKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKPLSDVTPMFRRLSAEKKFVE*
Ga0126370_102204453	3300010358	Tropical Forest Soil	MSQRSCTLYGARRSVIECDVNTDDDKKTFLTHYSPINGVDYNFALFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKALSDVTPKFRRLSAERKFVE*
Ga0126370_106780633	3300010358	Tropical Forest Soil	VIPPRFAAHGAVWLNVHDMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFRNPLSDVTPTFRRVSAEKKFVE*
Ga0126370_116735041	3300010358	Tropical Forest Soil	NGVDYIFASVDRYLSGDECDQLHQKYFEAHREMTASEEWLFVDLRPVFRKQLSDVTPRFRRVSAEKKFVE*
Ga0126376_105420972	3300010359	Tropical Forest Soil	LNAAVNTDDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKLLSDVTPKFRRLSAERKFVE*
Ga0126376_108410992	3300010359	Tropical Forest Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFQEALSDVTPKFRRVSA
Ga0126372_104407142	3300010360	Tropical Forest Soil	MNTDDENKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKPLSDVPPKFRRLSAERKFVE*
Ga0126372_116278491	3300010360	Tropical Forest Soil	VNTDDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKALSDVTPKFRRLSAERKFVE*
Ga0126372_117303941	3300010360	Tropical Forest Soil	MSNGDANKTFLTHYSPIKGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPNEWLRVDLRPAFRTPLSDVTPAFRRVSAEKNFVE*
Ga0126378_110583581	3300010361	Tropical Forest Soil	NGVDYIFASVDRYLSGDECDQLHQKYFEAHREMTAPDEWLFVDLRPAFRKPLSDVTPKFRRVSADRKFVE*
Ga0126377_109189522	3300010362	Tropical Forest Soil	MNTDDENKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQEYFESHRKMTAPDEWLFVDLRPAFRKALSDVTPTFRRLSAERKFVE*
Ga0126377_112654892	3300010362	Tropical Forest Soil	VIPPRFAAHGAVWLNVHRMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRKTTAPNEWLFVDLSPAFREPLSDVMPTFRRVSAEKKFVE*
Ga0126379_104920461	3300010366	Tropical Forest Soil	MSNGDDNKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPNEWLFVDLRPAFRDPLSDVAPKFRRVSAEKKFVE*
Ga0126379_120347352	3300010366	Tropical Forest Soil	MNTGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDELHQEYFESHREMTAPNEWLFIDLRPAFRKPLSDVAPKFRKVSAEKKFVE*
Ga0126379_125639222	3300010366	Tropical Forest Soil	MSTGDEDKTFLTHYSPINGVDYIFASVDRYLSGDECDRLHQKYFESHREMTEPDEWLFIDLRPAFRKSLPDVTPKFRRVSADRKFVE*
Ga0126381_1004288152	3300010376	Tropical Forest Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTAPSEWLFVDLRPAFREALSDVTPTFRRVSAEKKFVE*
Ga0126381_1006700503	3300010376	Tropical Forest Soil	MSTGDEDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRKVTEPDEWLFIDLRPAFRKSLPDVTPKFRRVSADRKFVE*
Ga0126381_1009985903	3300010376	Tropical Forest Soil	PINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASTEWLFIDLRPAFQEALSGVTPKCRRVSAEKKFVE*
Ga0126381_1010884752	3300010376	Tropical Forest Soil	LRTSRRWIAACKLGRAALNSQSCTLYGARRSVIECCREHRRRRKNVLTHYSPIDGVDYIFASFDRYLSGDESDQLQQKYFESHRKMTAPDEWLFVDLRPAFRKPLSDVTPTFRRLSAERKFVE*
Ga0126381_1022751832	3300010376	Tropical Forest Soil	MSNGNDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQAYFESHREMTAPNEWLFIDLRPAFRKPLSDVTPKFRRVSAEKKFVE*
Ga0126381_1039712602	3300010376	Tropical Forest Soil	LNAAVNTDDDEKTFLTHYSPINGVDYIFASVDRYLSGEECDQLHQKYFDSHRQMTASNEWLFIDLRPAFQQPLSDVTPKFRRVSAER
Ga0126383_101676903	3300010398	Tropical Forest Soil	VERGIYLGAEIRVHQSSLRPDGAPSVIPPRFAAHGAVWLNVHDMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRKTTAPNEWLFVDLRPAFREPLSDVTPTFRRVSAEKKFVE*
Ga0126383_102200113	3300010398	Tropical Forest Soil	LNAAVNTEDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQEYFESHRKMTAPDEWLFVDLRPAFRKPLSDVTPKFRRLSAERKFVE*
Ga0126383_116420331	3300010398	Tropical Forest Soil	KTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDPRPAFRKPLSDVTPMFRRLSAEKKFVE*
Ga0126383_129119901	3300010398	Tropical Forest Soil	DDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKPLSDVTPKFRRLSAERKFVE*
Ga0126383_130779391	3300010398	Tropical Forest Soil	MNTDDDQKTFLTHYSPINGVDYIFASLDRYLSGDECDQLHQKYFQAHREMTAPDEWLVVDLRPAFRKPLSDVTPKFRRVSADRKFVE*
Ga0126375_101292032	3300012948	Tropical Forest Soil	MNTDDEKTFLTHYSPINGVDYIFASFHRYLSGDECDQLQQKYFQAHREMTMPDEWLFVDLRPAFKKQLSDVTPKFRRLSAERKFVE*
Ga0126375_104094201	3300012948	Tropical Forest Soil	MNTGDDDKTFLTHYSPIDGVDYIFASVDRYLSGDECDQLHQKYFEAHRKMTAPDEWLFVDLRPAFRKPLSDVTPKFRRVSADRKFVE*
Ga0126375_110131662	3300012948	Tropical Forest Soil	VIPPRFAAHGAVWLNVHRMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFRNPLSDVTPTFRRVSAEKKFVE*
Ga0126369_130107741	3300012971	Tropical Forest Soil	MNTDDDNKAFLTHYSPINGVDDIFASVERYLSGDECDQLHQKYFEAHREMTAPDEWLFVELRPAFRKPLSDV
Ga0126369_132513372	3300012971	Tropical Forest Soil	YSPINGVDYIFASVERYLSGDECDQLHQKYSEAHREMAAPDEWLLVDLRPAFRKPLSDVTPNFRRVSAERKFVE*
Ga0164307_114663821	3300012987	Soil	MPAMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGGECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE*
Ga0132258_119429332	3300015371	Arabidopsis Rhizosphere	LNAAVNTDDDEKTFLTHYSPIDGVDYIFASFDRYLSGDESDQLHQRYFESHRKMTAPDEWLFVDLRPAFRKLLSDVTPKFRRLSAERKFVE*
Ga0132257_1002928342	3300015373	Arabidopsis Rhizosphere	LNAAVNTDDDKKTFLTHYSPIDGVDYIFASFDRYLSGDESDQLHQRYFESHRKMTAPDEWLFVDLRPAFRKLLSDVTPKFRRLSAERKFVE*
Ga0182041_102651682	3300016294	Soil	MPAMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIHLRPALRDPLSDVTPKFRRVSAEKKFVE
Ga0182032_103331944	3300016357	Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRETTASNEWLFIDLRPAFQEALSDVTPKFRRVSA
Ga0182032_112510411	3300016357	Soil	DKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE
Ga0182037_117697031	3300016404	Soil	NGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE
Ga0182038_107231761	3300016445	Soil	WRSVRVPARFTAHGAVWLNTGVNTDDDKKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYLESHRKLTAPDEWLFVDLRPAFRKPLSDVTPKFRRLSAERKLVE
Ga0126371_101963593	3300021560	Tropical Forest Soil	LNAAVNTDDDEKTFLTHYSPINGVDYIFASVDRYLSGEECDQLHQKYFDSHRQMTASNEWLFIDLRPAFQQPLSDVTPKFRRVSAERKFVE
Ga0126371_108591601	3300021560	Tropical Forest Soil	VERGIYLGAEIRVHQSSLRPDGAPSVIPPRFAAHGAVWLNVHDMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRKTTAPNEWLFVDLRPAFREPLSDVTPTFRRVSAEKKFVE
Ga0126371_117757612	3300021560	Tropical Forest Soil	RKNVLTHYSPIDGVDYIFASFDRYLSGDESDQLQQKYFESHRKMTAPDEWLFVDLRPAFRKPLSDVTPTFRRLSAERKFVE
Ga0126371_128823372	3300021560	Tropical Forest Soil	LIESNNLFKANRKSALNDAMKNGDDDKTFLTHYSPINGVDYIFASVDRYLCGEECDQLHQKYFESHREMTASNEWLFIDLRPAFQQPLSDVTPKFRRVSAEKRLVE
Ga0306917_105147642	3300031719	Soil	MSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE
Ga0318509_107606781	3300031768	Soil	MNTDDQNKTFLTHYSPINGVDYIFASVDRYLSGDESDQLHQKYFESHRKLTAPDEWLFVDLRPAFRKPLSDVTPKFRRLSAERKFVE
Ga0306925_109578841	3300031890	Soil	TFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHRETTASNEWLFIDLRPAFQEALSDVTPKFRRVSAEKKFVE
Ga0306925_113955511	3300031890	Soil	MSNGDDDKTFLTHYSPINGVDYIFASVGRYLSGEECDQLHQKYFESHRDMTAPNEWLFVDLRPAFRKALPDVTPKFRSLSAERKFVE
Ga0306923_106076261	3300031910	Soil	MPAMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRLSAERKFVE
Ga0306921_112041512	3300031912	Soil	MPAMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE
Ga0306921_113649272	3300031912	Soil	MNTGGDDKTFLTHYSPINGVDYIFASFDRYLSGDESDQLHQKYFESHRKMTAPDEWLFVDLRPAFRKPLSDVAPMFRRLSAERKFVE
Ga0306921_119820961	3300031912	Soil	MNTGDDDKTFLTHYSPINGVDYIFASFDRYLSGDECDQLHQRYFQSHRKMTAPDEWLFVDLRPAFRKALSD
Ga0310909_112077492	3300031947	Soil	LNAAVNTDADEKTFLTHYFPIDGVDYIFASFDRYLSGDESDQLHQKYLESHRKLTAPDEWLFVDLRPAFRKPLSDVTPKFRRLSAERKLVE
Ga0306926_103173272	3300031954	Soil	PAMSNGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE
Ga0306926_110830592	3300031954	Soil	MNTGDDDKTFLTHYSPINGVDYIFASVDRYLSGDECDRLHQKYFESHRKMTAPDEWLFIDLRPAFREPLPHVTPKFRRVSADRKFVE
Ga0306922_117086811	3300032001	Soil	DDKTFLTHYSPINGVDYIFASFDRYLSGDECDQLHQRYFQSHRKMTAPDEWLFVDLRPAFRKALSDVTPKFRRLSTERKFVE
Ga0318533_102495413	3300032059	Soil	MNTGGDDKTFLTHYSPINGVDYIFASVDRYLSGDECDQLHQKYFESHREMTASNEWLFIDLRPAFREPLSDVTPKFRRVSAEKKFVE
Ga0306920_1009638582	3300032261	Soil	MNTGDDDKTFLTHYSPINGVDYIFASFDRYLSGDECDQLHQRYFQSHRKMTAPDEWLFVDLRPAFRKALSDVTPKFRRLSTERKFVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102299

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences