Metagenome Family F102423

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102423
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	55 residues
Representative Sequence	TSTGMRSVIVVLYVARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFTGWHKLRPAAEA
Number of Associated Samples	82
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.95 %
% of genes near scaffold ends (potentially truncated)	94.06 %
% of genes from short scaffolds (< 2000 bps)	95.05 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.129 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.693 % of family members)
Environment Ontology (ENVO)	Unclassified (41.584 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.287 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07228	SpoIIE	2.97
PF01702	TGT	2.97
PF01850	PIN	2.97
PF01367	5_3_exonuc	2.97
PF04295	GD_AH_C	2.97
PF00078	RVT_1	1.98
PF13545	HTH_Crp_2	1.98
PF04264	YceI	1.98
PF01548	DEDD_Tnp_IS110	1.98
PF00072	Response_reg	0.99
PF02604	PhdYeFM_antitox	0.99
PF14690	zf-ISL3	0.99
PF02446	Glyco_hydro_77	0.99
PF08281	Sigma70_r4_2	0.99
PF05598	DUF772	0.99
PF02922	CBM_48	0.99
PF07411	DUF1508	0.99
PF00903	Glyoxalase	0.99
PF02739	5_3_exonuc_N	0.99
PF00194	Carb_anhydrase	0.99
PF06831	H2TH	0.99
PF02371	Transposase_20	0.99
PF00128	Alpha-amylase	0.99
PF04203	Sortase	0.99
PF11453	DUF2950	0.99
PF07731	Cu-oxidase_2	0.99
PF01758	SBF	0.99
PF02690	Na_Pi_cotrans	0.99
PF08240	ADH_N	0.99
PF10009	DUF2252	0.99
PF00009	GTP_EFTU	0.99
PF13442	Cytochrome_CBB3	0.99
PF16864	Dimerisation2	0.99
PF04397	LytTR	0.99
PF07549	Sec_GG	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	3.96
COG0343	Queuine/archaeosine tRNA-ribosyltransferase	Translation, ribosomal structure and biogenesis [J]	2.97
COG1549	Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains	Translation, ribosomal structure and biogenesis [J]	2.97
COG2721	Altronate dehydratase	Carbohydrate transport and metabolism [G]	2.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.97
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	1.98
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.99
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.99
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	0.99
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	0.99
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.99
COG1283	Na+/phosphate symporter	Inorganic ion transport and metabolism [P]	0.99
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.99
COG1640	4-alpha-glucanotransferase	Carbohydrate transport and metabolism [G]	0.99
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.99
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.99
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.99
COG3338	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.99
COG3422	Uncharacterized conserved protein YegP, UPF0339 family	Function unknown [S]	0.99
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.99
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.12 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.12 %
Unclassified	root	N/A	11.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.13 %
Unclassified	root	N/A	11.88 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	49.50 %
Unclassified	root	N/A	11.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	37.62 %
Unclassified	root	N/A	11.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.96 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.97 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.63 %
Unclassified	root	N/A	11.88 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.97 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.97 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.99 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.99 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.63 %
Unclassified	root	N/A	11.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.97 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.99 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.99 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.99 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.99 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.63 %
Unclassified	root	N/A	11.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.97 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.99 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.99 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.99 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.99 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.99 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.99 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.63 %
Unclassified	root	N/A	11.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.97 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.99 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.99 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.99 %
Paraburkholderia bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia bryophila	0.99 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.99 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.99 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.63 %
Unclassified	root	N/A	11.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.97 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.99 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.99 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.99 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.99 %
Paraburkholderia bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia bryophila	0.99 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.99 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003223\|JGI26343J46809_1021581	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300003368\|JGI26340J50214_10097539	Not Available	756	Open in IMG/M
3300003368\|JGI26340J50214_10107507	Not Available	712	Open in IMG/M
3300004092\|Ga0062389_100368396	Not Available	1542	Open in IMG/M
3300005332\|Ga0066388_108336947	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005435\|Ga0070714_100462677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia bryophila	1206	Open in IMG/M
3300005539\|Ga0068853_101516005	Not Available	649	Open in IMG/M
3300005610\|Ga0070763_10784879	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300005764\|Ga0066903_103025743	All Organisms → cellular organisms → Bacteria → Acidobacteria	911	Open in IMG/M
3300005764\|Ga0066903_105814089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300005921\|Ga0070766_10000721	All Organisms → cellular organisms → Bacteria	15155	Open in IMG/M
3300009093\|Ga0105240_11350724	Not Available	750	Open in IMG/M
3300009521\|Ga0116222_1204733	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300009523\|Ga0116221_1247671	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300009683\|Ga0116224_10059201	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300010048\|Ga0126373_12040683	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300010339\|Ga0074046_10539861	All Organisms → cellular organisms → Bacteria → Acidobacteria	694	Open in IMG/M
3300010339\|Ga0074046_10756938	Not Available	569	Open in IMG/M
3300010341\|Ga0074045_10524470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	760	Open in IMG/M
3300010361\|Ga0126378_12366961	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300010361\|Ga0126378_13032961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300010376\|Ga0126381_104299939	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300010379\|Ga0136449_103393306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300014968\|Ga0157379_12315334	Not Available	535	Open in IMG/M
3300016270\|Ga0182036_10180087	Not Available	1532	Open in IMG/M
3300016270\|Ga0182036_10920752	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300016341\|Ga0182035_10832644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300016357\|Ga0182032_10229481	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1431	Open in IMG/M
3300016357\|Ga0182032_10845362	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300016371\|Ga0182034_10039274	All Organisms → cellular organisms → Bacteria	3038	Open in IMG/M
3300016371\|Ga0182034_10177443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1628	Open in IMG/M
3300016371\|Ga0182034_10736666	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300016371\|Ga0182034_11623879	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300016387\|Ga0182040_10578380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	907	Open in IMG/M
3300016404\|Ga0182037_10939550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300016404\|Ga0182037_11157896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300016404\|Ga0182037_11437201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300016422\|Ga0182039_11421225	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300017939\|Ga0187775_10054829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1228	Open in IMG/M
3300017961\|Ga0187778_11219622	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300017966\|Ga0187776_10308552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1031	Open in IMG/M
3300017972\|Ga0187781_10257663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1235	Open in IMG/M
3300017973\|Ga0187780_10938141	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300018058\|Ga0187766_11121691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300020579\|Ga0210407_10567574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885	Open in IMG/M
3300020581\|Ga0210399_10977174	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300021168\|Ga0210406_11010484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300021181\|Ga0210388_11208668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300021401\|Ga0210393_10014410	All Organisms → cellular organisms → Bacteria	6128	Open in IMG/M
3300021405\|Ga0210387_10724215	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300021407\|Ga0210383_10394686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1193	Open in IMG/M
3300021420\|Ga0210394_10447738	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300021432\|Ga0210384_11114593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300021474\|Ga0210390_10672741	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300021479\|Ga0210410_10772060	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300021479\|Ga0210410_11359596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300021559\|Ga0210409_11606015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300021560\|Ga0126371_10436935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1454	Open in IMG/M
3300025905\|Ga0207685_10236883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	876	Open in IMG/M
3300026833\|Ga0207728_113089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300026862\|Ga0207724_1010560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300026945\|Ga0207743_1008020	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1178	Open in IMG/M
3300027035\|Ga0207776_1046042	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	527	Open in IMG/M
3300027783\|Ga0209448_10229617	Not Available	614	Open in IMG/M
3300030659\|Ga0316363_10306645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300031249\|Ga0265339_10029692	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3100	Open in IMG/M
3300031545\|Ga0318541_10307084	Not Available	884	Open in IMG/M
3300031545\|Ga0318541_10585129	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300031679\|Ga0318561_10346187	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	815	Open in IMG/M
3300031680\|Ga0318574_10561547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300031681\|Ga0318572_10094413	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300031708\|Ga0310686_115779383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300031720\|Ga0307469_10266725	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300031736\|Ga0318501_10250971	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300031744\|Ga0306918_10832055	Not Available	720	Open in IMG/M
3300031764\|Ga0318535_10199112	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300031771\|Ga0318546_10783519	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300031780\|Ga0318508_1187275	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300031798\|Ga0318523_10313876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300031805\|Ga0318497_10275250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	936	Open in IMG/M
3300031819\|Ga0318568_10200950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1229	Open in IMG/M
3300031821\|Ga0318567_10679655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300031890\|Ga0306925_11481033	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031890\|Ga0306925_11493314	Not Available	662	Open in IMG/M
3300031942\|Ga0310916_11045378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300031945\|Ga0310913_10848383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300031954\|Ga0306926_11037434	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300031954\|Ga0306926_12904843	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300032001\|Ga0306922_10067624	All Organisms → cellular organisms → Bacteria	3728	Open in IMG/M
3300032035\|Ga0310911_10183911	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300032035\|Ga0310911_10242262	All Organisms → cellular organisms → Bacteria → Acidobacteria	1031	Open in IMG/M
3300032160\|Ga0311301_10962963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1136	Open in IMG/M
3300032180\|Ga0307471_103504590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300032261\|Ga0306920_101167596	All Organisms → cellular organisms → Bacteria → Acidobacteria	1114	Open in IMG/M
3300032261\|Ga0306920_101856950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300032261\|Ga0306920_102394584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300032261\|Ga0306920_103632413	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300032783\|Ga0335079_11056014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300032955\|Ga0335076_10336389	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300033158\|Ga0335077_10447317	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	1377	Open in IMG/M
3300033289\|Ga0310914_11132454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.04%
Host-Associated	Host-Associated	3.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.09%
Aquatic	Environmental → Aquatic	4.95%
Plants	Host-Associated → Plants	3.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.09%
Freshwater	Environmental → Aquatic → Freshwater	4.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.88%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003223	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300026945	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26343J46809_10215811	3300003223	Bog Forest Soil	VMATATSMRSVIVVLYIARYCFPGTDVYMVPIVYLSLMVPTNMLFHLAFTVWQKVKLRRAAAA*
JGI26340J50214_100975391	3300003368	Bog Forest Soil	RSVIVVLYVARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFTGWHKLRPGAET*
JGI26340J50214_101075072	3300003368	Bog Forest Soil	IVVLYVARYCFPGTDVYMVPVVYLSLMVPANMLFHLAFKAWHKWRPAPA*
Ga0062389_1003683961	3300004092	Bog Forest Soil	IARYCFPGTDVYMVPIVYLSLMVPTNMLFHLAFTVWQKVKLRRAAAA*
Ga0066388_1083369471	3300005332	Tropical Forest Soil	TTGMRSVIVVWYVARYCFPGTQVYMIPLIYLSLMVPANLLFQLAFIWRRKLRPAQERAAA
Ga0070714_1004626771	3300005435	Agricultural Soil	VMATSTGMRSVIVVLYVARFCFPRTNIYMIPLVYFSLMVPTNLLFHLASNGWHKLRPAGEA*
Ga0068853_1015160052	3300005539	Corn Rhizosphere	VLYVARYCFPGTNVYMIPIVYLSLMVPLNLLFHLAFTGWHKLWPVPPGDSTEEG*
Ga0070763_107848791	3300005610	Soil	LYVARYCFPGTSVYMIPIVYISLMVPTNLLFHLAFAGWHTLRPAAEA*
Ga0066903_1030257432	3300005764	Tropical Forest Soil	VIVVLYIARFCFPGTHIYMIPVVYISLMVPTNLLFHLASVGWHKLWPVKSDSSPAFID*
Ga0066903_1058140891	3300005764	Tropical Forest Soil	VLATSNGMRSMIVVLYIARYCFPGTNIYMIPIVILSLMVPTNLLFHLAFVGWHKLRPTAAQA*
Ga0070766_100007211	3300005921	Soil	VLATSTGMRSVIVVLYVARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFTGWHKLRPAAEGR*
Ga0105240_113507242	3300009093	Corn Rhizosphere	VIVVLYVARYCFPGTNVYMIPIVYLSLMVPLNLLFHLAFTGWHKLWPVPPGDSTEEG*
Ga0116222_12047331	3300009521	Peatlands Soil	SVIVVFYVARYCFPGTNVYMIPIVYLSLMVPTNLVFYLAFTGWHKLRPAAEA*
Ga0116221_12476712	3300009523	Peatlands Soil	VLYVARYCFPGTNVYMIPIVYLSLMVPTNLVFYLAFTGWHKLRPAAEA*
Ga0116224_100592014	3300009683	Peatlands Soil	GMRSVIVVLYVARYCFPGTNVYMIPIVCVSLMVPTNLLFHLAFTGWHKLRPAAEVYGDSGD*
Ga0126373_120406832	3300010048	Tropical Forest Soil	ATSSGMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVLTNLLFHLAFVGWHKLRPTAAQA
Ga0074046_105398612	3300010339	Bog Forest Soil	RSVIVVLYVARYCFPGTNVYMVPVVYLSLMVPTNLLFHLAFTGWTKLRPAGARS*
Ga0074046_107569382	3300010339	Bog Forest Soil	TSTGMRSVIVVLYIARYCFPGTSVYMVPIVYLSLMVPTNLLFHLAFAGWHKWRPATG*
Ga0074045_105244702	3300010341	Bog Forest Soil	LATSTGMRSVIVVLYVARYCFPGTNVYMVPVVYLSLMVPTNLLFHLAFTGWQKLRPAEPKSTSLAG*
Ga0126378_123669612	3300010361	Tropical Forest Soil	LYVARYCFPGTHIYMIPIVFLSLMVPTNLLFHLAFLGWQKLRPTAAAQA*
Ga0126378_130329611	3300010361	Tropical Forest Soil	MRSVIVVLYVARYCFPGSNIYMIPIVYLSLMVPTNLLFHLAFTGWHKLRPGAMKA*
Ga0126381_1042999391	3300010376	Tropical Forest Soil	LVLYIARACFPGTNVAIVPVVYLSIMVPANLLFHLAFTGWQKLRSRRT*
Ga0136449_1033933062	3300010379	Peatlands Soil	ATSTGMRSVIVVLYVARYCFPGTNVYMIPIVYVSLMVPTNLLFHLAFTGWHNLRPEAAKSKSLPG*
Ga0157379_123153342	3300014968	Switchgrass Rhizosphere	RVLATSTGMRSVIVVLYVARYCFPGTNVYMIPIVYLSLMVPLNLLFHLAFTGWHKLWPVPPGDSTEEG*
Ga0182036_101800871	3300016270	Soil	SRRVVATSTGMRSVIVVLYVARYCFPGTNVYMVPIVYLSLMIPTNLLFHLVFIGWHKLRPTAAQA
Ga0182036_109207521	3300016270	Soil	GMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFVGWHKLRPTAAQA
Ga0182035_108326441	3300016341	Soil	RVLAASTGMRSVVVILYAARYCFPVTNVDILPIGHLSLMVPTNLLFHLAFVGWHKLRPTAAHRLQQNG
Ga0182032_102294811	3300016357	Soil	RRVLATTTGMRNVIVVLYVARYCFPDTHVFMVPMAYLALMVPTNLIFHLVFVGWQKLWPAQESVGQMSYVRTKSNPT
Ga0182032_108453622	3300016357	Soil	WYIARYCFPGTQVYMIPLIYLSLMVPTNLLFHLAFIWRRKLQPAQGRAAA
Ga0182034_100392744	3300016371	Soil	VLYVARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFAGWHRSHTGQ
Ga0182034_101774431	3300016371	Soil	VLYVARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFAGWHRLRPLPRDA
Ga0182034_107366662	3300016371	Soil	IARYCFPGTQVYMIPLIYLSLMVPTNLLFHLAFIWRRKLQPAQRRAAA
Ga0182034_116238792	3300016371	Soil	VVLYLARYCFADTNVYMIPIVYLSLMVPTNLLFHLAFAGWSKLSSASN
Ga0182040_105783801	3300016387	Soil	TSTGMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFVGWHKLWPTEAQA
Ga0182037_109395501	3300016404	Soil	VLATSTGMRSVIVVLYAARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFEGWRKVRVAVARA
Ga0182037_111578961	3300016404	Soil	GMRSVIVVLYIARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFTGWYKLRPAQST
Ga0182037_114372011	3300016404	Soil	MATATGMRSVILVLYIARACFSGTNVAMVPVVYLSIMVPTNLLFHLAFSGWQKMRPAKA
Ga0182039_114212251	3300016422	Soil	GMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFVGWHKLWPTEAQA
Ga0187775_100548293	3300017939	Tropical Peatland	VVLYIARYCFPGTNVYMIPIVYLSLMVPTNLLFHLALSGWHKLRPVEGTRGVRRSAKR
Ga0187778_112196222	3300017961	Tropical Peatland	ATGMRSVVGVLYVARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFTGWHKLRPTVTEA
Ga0187776_103085521	3300017966	Tropical Peatland	RRVMATSTGMRSVIVVLYIARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFSGWHKLRPVEET
Ga0187781_102576631	3300017972	Tropical Peatland	SVIGVLYVARYCFPGTNIYMIPIVYLSLMVPTNLLFHLVFTGWHKLRPTVTEA
Ga0187780_109381411	3300017973	Tropical Peatland	RRVVATSTGMRSVIVVLYIARYCFPGTNVYMIPIVYLSLMIPTNLLFHLVFMGWHKLRPAATQA
Ga0187766_111216911	3300018058	Tropical Peatland	SVIVVLYIARYCFPGTNVYMIPIVYLSLMIPTNLLFHLVFMGWHKLRPAATQA
Ga0210407_105675741	3300020579	Soil	RNVIVVLYVARYCFPGTSVYMIPIVYISLMVPTNLLFHLAFAGWHTLRPAAEA
Ga0210399_109771741	3300020581	Soil	TSTGMRSVIVVLYVARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFTGWHRLRPAAE
Ga0210406_110104842	3300021168	Soil	MRNVIVVLYVARYCFPGTSVYMIPIVYISLMVPTNLLFHLAFAGWHTLRPAAEA
Ga0210388_112086681	3300021181	Soil	YVARYCFPGTNVYMIPIVYLSLMVPANLLFHLAFTGWHKLRPAAEA
Ga0210393_100144105	3300021401	Soil	VLATATGMRNVIVVLYVARYCFPGTSVYMIPIVYISLMVPTNLLFHLAFAGWHTLRPAAE
Ga0210387_107242152	3300021405	Soil	TTTGMRSVIVVLYVARSCFPGTRVFMVPIVYLSLMVPANLVFTTAYSLWRKRHAAPSAVA
Ga0210383_103946863	3300021407	Soil	VLATSTGMRSVIVVLYVARYCFPGTNVHVIPIVYLSLMVPTNLLFHLAFTGWYKLRPAAQ
Ga0210394_104477381	3300021420	Soil	LYVARYCFPGTNVYMIPIVYLSLMVPTNVLFHLAFTGWHKLRPAAET
Ga0210384_111145931	3300021432	Soil	LYVARYCFPGTNVYMIPIVYLSLMVPANLLFHLAFTGWHKLRPAAEA
Ga0210390_106727411	3300021474	Soil	TGMRSVIVVLYVARYCFPGTNVYMIPIVYLSLMVPANLLFHLAFTGWHKLRPAAEA
Ga0210410_107720601	3300021479	Soil	ATSTGMRSVIVVLYVARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFTGWHKLRPTAEGRRFE
Ga0210410_113595961	3300021479	Soil	STGMRSVVVVLYVARYCFPGTNVYMIPIVYLSLMVPTNLLFHVAFTGWHKLRPATEA
Ga0210409_116060151	3300021559	Soil	VVVLYVARYCFPGTNVYMIPIVYLSLMVPTNLLFQLAFTGWQKLRPAAERRRSSD
Ga0126371_104369353	3300021560	Tropical Forest Soil	VLATSNGMRSMIVVLYIARYCFPGTNIYMIPIVILSLMVPTNLLFHLAFVGWHKLRPTAA
Ga0207685_102368831	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	TSTGMRSVIVVLYVARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFTGWHKLRPAAEA
Ga0207728_1130891	3300026833	Tropical Forest Soil	YAARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFVGWHKLRPAAARA
Ga0207724_10105601	3300026862	Tropical Forest Soil	TGMRSVIVVLYIARYCFPKTNVYMIPIVYLTLMVPTNLLFHLTFTVWNRSRPATAGV
Ga0207743_10080201	3300026945	Tropical Forest Soil	LYAARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFVGWHKLRPAAARA
Ga0207776_10460421	3300027035	Tropical Forest Soil	RVLATTTGMRNVIVVLYVARYCFTDTHVFMVPIVYLALMVPTNLLFHLGFAVWQKLRPARGNVGQLVN
Ga0209448_102296171	3300027783	Bog Forest Soil	IVVLYIARYCFPGTSVYMVPIVYLSLMVPTNLLFHLAYTGWRKWRPAAG
Ga0316363_103066451	3300030659	Peatlands Soil	STGMRSVIVVLYVARYCFPGTNVYMIPIVYVSLMVPTNLLFHLAFTGWHKLRPVAEA
Ga0265339_100296921	3300031249	Rhizosphere	VLYVARYCFPGTAVYTVPIVYLSLMVPTNMVFHLAYTEWQKWRPAAT
Ga0318541_103070841	3300031545	Soil	GMRSVVVVLYAARYCFPGTNVYMIPIVYLSLMVPTNLLFHLALVGWRKLRPAAARA
Ga0318541_105851291	3300031545	Soil	VLATSTGMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFVGWHKLWPTEAQA
Ga0318561_103461871	3300031679	Soil	LYVARYCFPGTNIYMVPIVYLSLMVPLNLLFHLAFMGWHKLQPEATQAQ
Ga0318574_105615471	3300031680	Soil	RSVVVVLYAARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFVGWRKLRPAAARA
Ga0318572_100944131	3300031681	Soil	LYIARYCFPGTNIYMIPIVYLSLMIPTNLLFHLAFAGWYKLQLAHGT
Ga0310686_1157793831	3300031708	Soil	VLATSTGMRSVIVVLYVARYCFPGTNIYMIPIVYLSLMVPTNVLFHLAFTGWHKLRPAAE
Ga0307469_102667251	3300031720	Hardwood Forest Soil	RRVLATSTGMRSVIVVLYVARYCFPGTNVYMIPIVYVSLMVPTNLLFHLAFTLWHKLRPAAEAK
Ga0318501_102509712	3300031736	Soil	YAARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFVGWRKLRPAAARA
Ga0306918_108320552	3300031744	Soil	RSVIVVLYIARYCFPGTSVHMVPIVYLSLMVPTNLVFHLAYAGWHKWRPAAG
Ga0318535_101991122	3300031764	Soil	VVVVLYAARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAFVGWRKLRPAAARA
Ga0318546_107835191	3300031771	Soil	RSVIVVLYVAHYCFPGTNIYMVPIVYLSLMVPTNLLFHLAFEGWHKLRPTSAQA
Ga0318508_11872752	3300031780	Soil	VVLYVARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFAGWHRSHTGQ
Ga0318523_103138761	3300031798	Soil	ESRRVLATSTGMRSVVVVLYAARYCFPGTNVYMIPIVYLSLMVPANLLFHLAFAGWRKLRPTAAPA
Ga0318497_102752501	3300031805	Soil	LATSTGMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFVGWHKLWPTEAQ
Ga0318568_102009502	3300031819	Soil	RVLATSSGMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFVGWHKLRPTAAQA
Ga0318567_106796551	3300031821	Soil	RSVIVVLYIARYCFPGTHIYMIPIVYLSLMVPANLLFHLAFVAWHKLRTAAFV
Ga0306925_114810331	3300031890	Soil	ELRRVLATSTGMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLLFHLAFVGWHKLWPTEAQA
Ga0306925_114933141	3300031890	Soil	IARYCFPGTSVHMVPIVYLSLMVPTNLVFHLAYAGWHKWRPAAG
Ga0310916_110453781	3300031942	Soil	GMRSVIVVLYAARYCFPGTNVYMIPVVYLSLMVPTNLLFHLAYARWQKLRPPHEGQLT
Ga0310913_108483831	3300031945	Soil	RVLATSTGMRSVVVVLYAARYCFPGTNVYMIPIVYLSLMVPANLLFHLAFAGWRKLRPTAARA
Ga0306926_110374342	3300031954	Soil	SVVVVLYVARFCFPRTNVYMIPIVYLSLMVPTNLVFHLAFVGWQKLRPS
Ga0306926_129048431	3300031954	Soil	REIRRIVATSTGMRNVIVVLYLARYCFADTNVYMIPIVYLSLMVPTNLLFHLAFAGWSKLSSASN
Ga0306922_100676248	3300032001	Soil	VIVVLYVARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFAGWHRLRPLPRDA
Ga0310911_101839111	3300032035	Soil	VARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFAGWHRSHTGQ
Ga0310911_102422622	3300032035	Soil	YVARYCFPGTNVYMVPIVYLSLMVPTNLLFHLGFIGMQKLWPTAAQA
Ga0311301_109629631	3300032160	Peatlands Soil	SVIVAPHVARYCFLGTDAYMVPIVYLSMMVPTKLVFHLAFTGWNKFGLRRGRRAMN
Ga0307471_1035045902	3300032180	Hardwood Forest Soil	VIVVLYVARYCFPGTNVYMIPIVYVSLMVPTNLLFHLAFTLWHKLRPAAEAK
Ga0306920_1011675961	3300032261	Soil	SVIVVLYIARYCFPRTNVYMVPIVYLSIMVPTNLLFYLAFTGWHKLRPAEGT
Ga0306920_1018569501	3300032261	Soil	VVLYVARYCFPGTNVYMVPIVYLSLMVPTNLLFHLAFAGWHRLRPLPRDA
Ga0306920_1023945841	3300032261	Soil	RIVATSTGMRNVIVVLYIARYCFPGTNVYMIPIVYLSLMVPTNLLFHLAYARWQKLRPPHEGQLT
Ga0306920_1036324132	3300032261	Soil	STGMRSVIVVLYIARYCFPGTNIYMIPIVYLSLMVPTNLFFHLAFVGWNKLRPTETQA
Ga0335079_110560141	3300032783	Soil	FIARYCFPRTNLYMIPIVYLTLMVPANMLFHLTFMVWNRLRPATASV
Ga0335076_103363891	3300032955	Soil	VVLFVARSCFPGTNIYMVPVVYLTLMVPTNLLFHLLFLGWQKLHSRPKPA
Ga0335077_104473171	3300033158	Soil	GPDRETRRILATCTGMRSVIVILYIARYCFPSSNVFMVPIVYVSLMVPTNLLFHLVFTGFHKLRTAATT
Ga0310914_111324541	3300033289	Soil	ARYCFPGTSVYMIPIVYLTLMVPANMLFHLGFIVWQKLRPAVAPVPSGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102423

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences