Metagenome / Metatranscriptome Family F102457

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102457
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	69 residues
Representative Sequence	VPAGLQILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDAYRAAGVR
Number of Associated Samples	83
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.94 %
% of genes near scaffold ends (potentially truncated)	92.08 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.257 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.624 % of family members)
Environment Ontology (ENVO)	Unclassified (54.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.465 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.63% β-sheet: 12.63% Coil/Unstructured: 54.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02775	TPP_enzyme_C	28.71
PF01042	Ribonuc_L-PSP	8.91
PF02776	TPP_enzyme_N	2.97
PF13470	PIN_3	1.98
PF00583	Acetyltransf_1	1.98
PF13379	NMT1_2	0.99
PF00732	GMC_oxred_N	0.99
PF00903	Glyoxalase	0.99
PF00205	TPP_enzyme_M	0.99
PF00535	Glycos_transf_2	0.99
PF13292	DXP_synthase_N	0.99
PF03404	Mo-co_dimer	0.99
PF00378	ECH_1	0.99
PF02661	Fic	0.99
PF02668	TauD	0.99
PF00239	Resolvase	0.99
PF01381	HTH_3	0.99
PF13380	CoA_binding_2	0.99
PF04014	MazE_antitoxin	0.99
PF02894	GFO_IDH_MocA_C	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	8.91
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.99
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.99
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.99
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.26 %
Unclassified	root	N/A	25.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.26 %
Unclassified	root	N/A	25.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.26 %
Unclassified	root	N/A	25.74 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.40 %
Unclassified	root	N/A	25.74 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.47 %
Unclassified	root	N/A	25.74 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	31.68 %
Unclassified	root	N/A	25.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.91 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.99 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.68 %
Unclassified	root	N/A	25.74 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.97 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.99 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.99 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.99 %
Tepidamorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.68 %
Unclassified	root	N/A	25.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.98 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.99 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.99 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.99 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.99 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.99 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.68 %
Unclassified	root	N/A	25.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.98 %
Methylocapsa aurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	0.99 %
Variovorax guangxiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax guangxiensis	0.99 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.99 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.99 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.99 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.68 %
Unclassified	root	N/A	25.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.98 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.99 %
Methylocapsa aurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	0.99 %
Variovorax guangxiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax guangxiensis	0.99 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.99 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.99 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	31.68 %
Unclassified	root	N/A	25.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.98 %
Rhizobium sp. PDO1-076	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. PDO1-076	0.99 %
Methylocapsa aurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	0.99 %
Variovorax guangxiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax guangxiensis	0.99 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.99 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.99 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_101979499	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300004152\|Ga0062386_101342638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	595	Open in IMG/M
3300004633\|Ga0066395_10138791	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300005171\|Ga0066677_10072907	All Organisms → cellular organisms → Bacteria → Proteobacteria	1768	Open in IMG/M
3300005177\|Ga0066690_10739367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	647	Open in IMG/M
3300005436\|Ga0070713_101077793	Not Available	776	Open in IMG/M
3300005439\|Ga0070711_100659099	Not Available	878	Open in IMG/M
3300005467\|Ga0070706_100327266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1429	Open in IMG/M
3300005559\|Ga0066700_10639446	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300009012\|Ga0066710_101868317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	902	Open in IMG/M
3300010048\|Ga0126373_10916524	Not Available	941	Open in IMG/M
3300010358\|Ga0126370_10210928	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300010360\|Ga0126372_10967681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300010361\|Ga0126378_12445882	Not Available	596	Open in IMG/M
3300010362\|Ga0126377_10304953	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300010376\|Ga0126381_100213042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2591	Open in IMG/M
3300010376\|Ga0126381_101014372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1198	Open in IMG/M
3300010376\|Ga0126381_104919241	Not Available	513	Open in IMG/M
3300012203\|Ga0137399_11587553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax guangxiensis	542	Open in IMG/M
3300012212\|Ga0150985_107840305	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300012212\|Ga0150985_114127947	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300012918\|Ga0137396_10173959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1576	Open in IMG/M
3300012948\|Ga0126375_10133013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1539	Open in IMG/M
3300012971\|Ga0126369_11625879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300012971\|Ga0126369_12810010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300016294\|Ga0182041_10496891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1057	Open in IMG/M
3300016341\|Ga0182035_10725210	Not Available	868	Open in IMG/M
3300016341\|Ga0182035_11951456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300016341\|Ga0182035_12136904	Not Available	508	Open in IMG/M
3300016371\|Ga0182034_10797664	Not Available	808	Open in IMG/M
3300016387\|Ga0182040_11054572	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300016422\|Ga0182039_11136620	Not Available	704	Open in IMG/M
3300020581\|Ga0210399_11076736	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300020583\|Ga0210401_10789947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	809	Open in IMG/M
3300021178\|Ga0210408_10747323	Not Available	768	Open in IMG/M
3300021180\|Ga0210396_10112211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2462	Open in IMG/M
3300021406\|Ga0210386_10351890	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300021444\|Ga0213878_10179714	Not Available	886	Open in IMG/M
3300021476\|Ga0187846_10302549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300021560\|Ga0126371_10434875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1457	Open in IMG/M
3300021560\|Ga0126371_12930359	Not Available	578	Open in IMG/M
3300022533\|Ga0242662_10015016	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300025910\|Ga0207684_10226886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1612	Open in IMG/M
3300025928\|Ga0207700_10824907	Not Available	830	Open in IMG/M
3300026538\|Ga0209056_10614649	Not Available	548	Open in IMG/M
3300026542\|Ga0209805_1051587	All Organisms → cellular organisms → Bacteria	2048	Open in IMG/M
3300027812\|Ga0209656_10065205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2002	Open in IMG/M
3300027844\|Ga0209501_10408797	All Organisms → cellular organisms → Bacteria → Proteobacteria	801	Open in IMG/M
3300027862\|Ga0209701_10678865	Not Available	534	Open in IMG/M
3300028881\|Ga0307277_10511724	Not Available	539	Open in IMG/M
3300028906\|Ga0308309_11014434	Not Available	719	Open in IMG/M
3300031474\|Ga0170818_103726210	Not Available	623	Open in IMG/M
3300031543\|Ga0318516_10126901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1457	Open in IMG/M
3300031543\|Ga0318516_10444133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300031543\|Ga0318516_10486614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300031546\|Ga0318538_10056403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1935	Open in IMG/M
3300031549\|Ga0318571_10282626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300031564\|Ga0318573_10497743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300031572\|Ga0318515_10208018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1049	Open in IMG/M
3300031680\|Ga0318574_10336620	Not Available	879	Open in IMG/M
3300031719\|Ga0306917_10623733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	848	Open in IMG/M
3300031719\|Ga0306917_10996136	Not Available	654	Open in IMG/M
3300031744\|Ga0306918_10591015	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300031744\|Ga0306918_10620586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	847	Open in IMG/M
3300031764\|Ga0318535_10539598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300031765\|Ga0318554_10651421	Not Available	592	Open in IMG/M
3300031777\|Ga0318543_10139806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1060	Open in IMG/M
3300031794\|Ga0318503_10128515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. PDO1-076	813	Open in IMG/M
3300031794\|Ga0318503_10172499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300031798\|Ga0318523_10612956	Not Available	536	Open in IMG/M
3300031799\|Ga0318565_10463111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300031819\|Ga0318568_10170669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1336	Open in IMG/M
3300031859\|Ga0318527_10357162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300031879\|Ga0306919_10698434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300031879\|Ga0306919_10810584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	719	Open in IMG/M
3300031879\|Ga0306919_10877959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300031890\|Ga0306925_10377310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1521	Open in IMG/M
3300031910\|Ga0306923_10861802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	995	Open in IMG/M
3300031912\|Ga0306921_10141974	All Organisms → cellular organisms → Bacteria → Proteobacteria	2806	Open in IMG/M
3300031912\|Ga0306921_11574259	Not Available	715	Open in IMG/M
3300031912\|Ga0306921_12432519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031941\|Ga0310912_11535309	Not Available	501	Open in IMG/M
3300031945\|Ga0310913_10640055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300031946\|Ga0310910_10783481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	751	Open in IMG/M
3300031947\|Ga0310909_10764284	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300031962\|Ga0307479_11042134	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300031981\|Ga0318531_10574151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300032009\|Ga0318563_10774554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300032035\|Ga0310911_10500638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300032044\|Ga0318558_10469772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300032052\|Ga0318506_10036931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1910	Open in IMG/M
3300032054\|Ga0318570_10339537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300032055\|Ga0318575_10347945	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300032060\|Ga0318505_10125233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300032066\|Ga0318514_10663211	Not Available	555	Open in IMG/M
3300032076\|Ga0306924_11737694	Not Available	652	Open in IMG/M
3300032076\|Ga0306924_11783994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300032091\|Ga0318577_10306608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300032261\|Ga0306920_100299023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2397	Open in IMG/M
3300032261\|Ga0306920_100309535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2352	Open in IMG/M
3300033289\|Ga0310914_10447617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1169	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.02%
Host-Associated	Host-Associated	1.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.06%
Aquatic	Environmental → Aquatic	3.96%
Plants	Host-Associated → Plants	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.07%
Freshwater	Environmental → Aquatic → Freshwater	2.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Marine	Environmental → Aquatic → Marine	0.99%
Cave	Environmental → Terrestrial → Cave	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.15%
Loam	Environmental → Terrestrial → Soil → Loam	7.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.95%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1019794993	3300004092	Bog Forest Soil	LLRQVPGGLQILAPGRDETIAQPPDWVAGYPRAVREALQAYGRGDPPPIPASECARAVRLIFDSYRAAGER*
Ga0062386_1013426382	3300004152	Bog Forest Soil	GLQILAPGRDEIIPQPDGWQAGYPRAVREALEAYGRGDPPPIPASACAHAVRLIFDSYRAAGVR*
Ga0066395_101387912	3300004633	Tropical Forest Soil	LRQLPGGLQLLGPGRDDFIPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGASSPVP*
Ga0066677_100729074	3300005171	Soil	GPGRDEFIPQPEAWQAGYPRAVREALEAYGRGDPSPIPASECAHAVRLIFDSYRAAGG*
Ga0066690_107393671	3300005177	Soil	GEQKVAGERLLLRQAPGGLQLTGPGRDEFIPQPEAWQAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFESYRAAARAA*
Ga0070713_1010777931	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GQGAEGGERLLLRQVPGGLQLLGPGRDEFLPQPAGWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFESYAIACVR*
Ga0070711_1006590993	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EGGERLLLRQVPGGLQLLGPGRDEFLPQPAGWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFESYAIACVR*
Ga0070706_1003272661	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AGERLLLREIPEGLQLLGPNREEIIPQPQGWEAGYPRAVKEALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGVS*
Ga0066700_106394461	3300005559	Soil	LLLRQVSGGLQILAPGRDETISQPPDWEAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFEAYRAAGLR*
Ga0066710_1018683171	3300009012	Grasslands Soil	PGRDETISQPPDWEAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFEAYRAAGLR
Ga0126373_109165241	3300010048	Tropical Forest Soil	PGRDEFLPQPADWQAGYPRAIREALEAYGRGDPPPIPASECARAVRLIFASYRLASVR*
Ga0126370_102109283	3300010358	Tropical Forest Soil	LLGPGRDDFIPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECARAVRLIFDSYRAAGASSPLPRTV*
Ga0126372_109676812	3300010360	Tropical Forest Soil	VAGERILLRQVLGGLQILAPGREETIPQPADWLAGYPRAVKEALEAYGRGDPPPIPASECARAVRLIFDSYRAAGVR*
Ga0126378_124458822	3300010361	Tropical Forest Soil	GLQLLGPGRDDFIPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGASSPVP*
Ga0126377_103049531	3300010362	Tropical Forest Soil	PGRDEFIPQPAGWQAGYSRAIREALEAYGRGDSPPIPASECARAVDLIFASYRAAGIATP
Ga0126381_1002130421	3300010376	Tropical Forest Soil	AGETVLLRQVLGGLQLLAPGRDEFLPQPADWQEGYPRVIREALEAYGRGDLPPIPASECARAVRLIFASYRLASVR*
Ga0126381_1010143721	3300010376	Tropical Forest Soil	GLQILAPGRDEFIPQPEGWQAGYPRAVKEALEAHGRGDPPPIPVTECAQAARLIFDSYRAAGIP*
Ga0126381_1049192411	3300010376	Tropical Forest Soil	GPGRDDFIPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGASSPLPRTV*
Ga0137399_115875532	3300012203	Vadose Zone Soil	GGLQLLAPNRDEIIPQPEGWEAGYPRAVREALEAYGRGDPPPIPPSECAHAVRLIFDSYRAAGVH*
Ga0150985_1078403051	3300012212	Avena Fatua Rhizosphere	MLLRQVPGGLQVLAPGREEMIPKPPEWKDGYPRVVREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGVR*
Ga0150985_1141279471	3300012212	Avena Fatua Rhizosphere	NQTDGEQKVAGEQLLLRQVPGWLQMLAPGRDEIIPQPADWEAGYPRAAREALEAYGRGGPPPIPASACARAVHLVFDSYRAAGVQ*
Ga0137396_101739591	3300012918	Vadose Zone Soil	LLLRQVPGGLQILAPGRDETIPQPPDWEAGYPRAVREALEAWARGDPPPIPASECAHAVRLIFEAYRAAGVR*
Ga0126375_101330133	3300012948	Tropical Forest Soil	WPANQTDGEQKVAGERLLLRQTAGGLQLIGPGRDEFIPQPAGWQAGYSRAIREALEAYGRGDSPPIPASECARAVDLIFASYRAAGIATP*
Ga0126369_116258792	3300012971	Tropical Forest Soil	GLQILAPGREETIPEPPGWEAGYPGAVKEALEAYGRGDPPPIPAIECAHAVRLIFDAYRAAGVH*
Ga0126369_128100102	3300012971	Tropical Forest Soil	GGRLLFRQVPGGLQLLGSGRDDFIPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECAQAIRLIFASYHSAGLRSTDRQR*
Ga0182041_104968912	3300016294	Soil	LAPGRDETIPQPPDWQAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFEAYRAAGAR
Ga0182035_107252101	3300016341	Soil	RLLLRQVPGGLQLLGSGRDDFIPQPEGWQAGYPRVIKEALEAYGRGDPPPIPASECAHAVRLIFDSYQAAG
Ga0182035_119514561	3300016341	Soil	RDEMIPQPPGWVAGYPRAAREALEAYCRGEPPPIPASECSHAVRLIFDAYRAAGER
Ga0182035_121369041	3300016341	Soil	GGLQIVGPGRDETIPQPADWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDAYRAAGVH
Ga0182034_107976641	3300016371	Soil	EQKIAGERLLLRQVPGGLQLLGSGRDDFIPQPEGWQAGYPRAIREALEACGRGDPPPIPASECAHAVRLIFDSYHAAG
Ga0182040_110545721	3300016387	Soil	AGERLLLRQVPGGLQIVGPGRDEMIPEPPDWQAGYPRAVREALEAYGRGDPPPIPASECARAVRLIFDAYRAAGVQ
Ga0182039_111366201	3300016422	Soil	QKVAGERMLLRQVPGGLQILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPTSECAHAVRLIFDSYRAADEI
Ga0210399_110767362	3300020581	Soil	MLLRQVPGGLQVLAPDREEIIPKPPEWQDGYPRVVREALEAYGRGDRPPIPASECAHAVRLIFDSYRAAGVR
Ga0210401_107899472	3300020583	Soil	RQAAGGLQLIAPGRDEFIPQPEDWQAGYPRAIREALEAYGRGDPPPIPASECAHAIRLIFDSYRAAGER
Ga0210408_107473233	3300021178	Soil	LLGPNREEIIAQPQGWEAGYPRAVKEALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGV
Ga0210396_101122111	3300021180	Soil	QVPGGLQLLAPGRDETVAQPAGWVAGYPRAVREALEAYGRGDPPPIAASECAHAIRLIFDAYRAAGEI
Ga0210386_103518901	3300021406	Soil	LLRQAAGGLQLFAPGRDEFIPQPEDWQAGYPRVIREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGVR
Ga0213878_101797141	3300021444	Bulk Soil	LRQGAGGLQILGPGRDETIPQPPGWVSGYPRAVTEALEAYGRGDPPPIPASACAHAVRLIFDAYRKAGVR
Ga0187846_103025491	3300021476	Biofilm	AGERLLLRQVPGGLQILAPGRDEIIPQPPQWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDSYHAAGER
Ga0126371_104348754	3300021560	Tropical Forest Soil	LLRQVPGGLQLLGPGRDDFIPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGASSPVP
Ga0126371_129303592	3300021560	Tropical Forest Soil	RLLLRQVQGGLQLLGSRRDEFIPEPEGWQAGYPRAVREALEAYGRGDLPPIPASECAHAVRLIFDSYRAAGVR
Ga0242662_100150161	3300022533	Soil	TDGEQKVAGERLLLRQVPGGLQVLAPGRDEIIPQPAGWQAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAAV
Ga0207684_102268862	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VAGERLLLREIPEGLQLLGPNREEIIPQPQGWEAGYPRAVKEALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGVS
Ga0207700_108249071	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GQPDGQGAEGGERLLLRQVPGGLQLLGPGRDEFLPQPAGWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFESYAIACVR
Ga0209056_106146492	3300026538	Soil	LLLRQVSGGLQILAPGRDETISQPPDWEAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFEAYRAAGLR
Ga0209805_10515874	3300026542	Soil	MPSWPANQTDGEQKVAGERLLLRQAPGGLQLTGPGRDEFIPQPEAWRAGYPRAVREALEAYGRGDPSPIPASECAHAVRLIFESYRAAGG
Ga0209656_100652051	3300027812	Bog Forest Soil	LAPGRDETIPQPEGWEIGYPRAVREALEAHGRGDPPPIPASECAHAVRLIFDSYRAAGVR
Ga0209501_104087972	3300027844	Marine	PERDEIIKTPEGWRSGFRPAVQEALEAFGRGDPPPIPARECARAVRLIHDSYRAAGVG
Ga0209701_106788651	3300027862	Vadose Zone Soil	LLRQVPGGLQILAPGRDETIAQSPDWEAGYPRAVREALEAYGRGDPPPIPASECARAVRLIFDGYRAAGVR
Ga0307277_105117241	3300028881	Soil	VAGERLLLRQVPGGLQILSPGREEIIPQPEGWQAGYPRAIREALEACGRGDPPPIPASACADAVRLIFDSYRAAGARRLSAGAAAG
Ga0308309_110144342	3300028906	Soil	GGLQLFAPGRDEFIRQPEHWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFDSYRAAGVR
Ga0170818_1037262101	3300031474	Forest Soil	EQKVAGERMLLRQVPGGLQILAPGRDETIPQPAGWVAGYPRAVKEALEAYGLGDPPTIPASECAHAVRLIFDAYRPLGQ
Ga0318516_101269011	3300031543	Soil	RQVPGGLQILASGRDETIPQPSDWQAGYPRAVREALEAFGRGDPPPIPASECARAVRLIFDAYRAAGEN
Ga0318516_104441332	3300031543	Soil	RQVPGGLQLLAPGRDEIIPEPVGWEAGYKRAIKEALEAFGRGDPPPIPASECARAVRLIFDSYRAAGMR
Ga0318516_104866142	3300031543	Soil	MSTWPANQTDGEQKVAGERMLLRQVPGGLQIVGPGRDEMIPQPPGWVAGYPRAVREALEAYCRGEPPPIPASECSHAVRLIFDAYRAAGER
Ga0318538_100564031	3300031546	Soil	LAPGREETIPQPPDWVAGYPRAVREALEAYSRGDQPPIPASECVHAVRLIFDAYRAAGER
Ga0318571_102826262	3300031549	Soil	EQKVAGERLLLRQVPGGLQILASGREETVPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECAQAVRLIFDSYRAAGVR
Ga0318573_104977431	3300031564	Soil	GGLQILASGRDETIPQPSDWQAGYPRAVREALEAFGRGDPPPIPASECARAVRLIFDAYRAAGET
Ga0318515_102080181	3300031572	Soil	GLQIVGPGRDEMIPQPPGWVAGYPRAVREALEAYCRGEPPPIPASECSHAVRLIFDAYRAAGER
Ga0318574_103366201	3300031680	Soil	VQGGLQVLAPGRDEIIPQPAGWEAGYPRAVREALEAHGRGDPPPIPAGACARALRLIFDSYQAAGIR
Ga0306917_106237332	3300031719	Soil	ERMLLRQVPGGLQILAPGRDETIPQPPDWQAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFEAYRAAGAR
Ga0306917_109961362	3300031719	Soil	APGRDEIIPQPAGWEAGYPRAVREALEAHGRGDPPPIPAGACARALRLIFDSYQAAGIR
Ga0306918_105910151	3300031744	Soil	AGERLLLRQVPGGLQILGPGRDETVPEPVDWQAGYPRAVREALEAYGRGDPPPIPASECARAVRLIFDAYRAAGVQ
Ga0306918_106205861	3300031744	Soil	LQVLAPGRDETIPQPPDWQAGYPRAVREALEAYGRGDPPPIPASECARAVRLIFDSYRAAGVR
Ga0318535_105395981	3300031764	Soil	LQILAPGRDETIPQPPDWVAGYPRAVGEALEAYGRGDPPPIPASECARAIRLIFDSYRIAGVQ
Ga0318554_106514212	3300031765	Soil	LQLIGPGHDEFIPQPEGWRAGYPRAIREALEAYGRGDPPPIPASECTRAVRLIFESYRVAAHAA
Ga0318543_101398061	3300031777	Soil	VPAGLQILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDAYRAAGVR
Ga0318503_101285153	3300031794	Soil	VPGGLQILAPGREETISQPPDWVAGYPRAVREALEAYSRGDQPPIPASECVHAVRLIFDAYRAAGER
Ga0318503_101724992	3300031794	Soil	ERLLLRQVSGGLQVLAPGRDETIPQPPDWQAGYPRAVREALEAYGRGDPPPIPASECARAVRLIFDSYRAAGVR
Ga0318523_106129562	3300031798	Soil	AGERLLLREIPEGLRLFAPDREEIIPQPEGWEAGYPRAVREALEAYGRGEPPPIPASECAHAIRLIFDSYRAADGS
Ga0318565_104631111	3300031799	Soil	RQVSGGLQIVGPGRDETIPQPPDWVAGYPRAVKEALEAYGRGDPPPIPASECAHAVRLIFDAYRAAGVG
Ga0318568_101706691	3300031819	Soil	VSGGLQMLAPGRDETIPQPPDWQAGYPRTVKEALEAYGRGDPPPIPASECARAVRLIFDAYRAAGAA
Ga0318527_103571621	3300031859	Soil	VPGGLRILASGRDETIPQPSDWQAGYPRAVREALEAFGRGDPPPIPASECARAVRLIFDAYRAAGET
Ga0306919_106984341	3300031879	Soil	GGLQIVGPGRDEMIPQPPGWVVGYPRAVREALEAYCRGEPPPIPASECSHAVRLIFDAYRAAGER
Ga0306919_108105841	3300031879	Soil	DGEQKVAGERMLLRQVPGGLQILAPGRDETIPQPPDWVAGYPRAVGEALEAYGRGDPPPIPASECARAIRLIFDSYRIAGVQ
Ga0306919_108779592	3300031879	Soil	MLLRQVPGGLQILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDSYRAADEI
Ga0306925_103773102	3300031890	Soil	LRQVSGGLQIVGPGRDETIPQPPDWVAGYPRAVKEALEAYGRDDPPPIPASECAHAVRLIFDAYRAAGVG
Ga0306923_108618021	3300031910	Soil	QIVGPGRDEMIPQPPGWVAGYPRAVREALEAYCRGEPPPIPASECSHAVRLIFDAYRAAGER
Ga0306921_101419745	3300031912	Soil	GGLQILAPGRDEAIPRPPDWVAGYPRAVKEALEAYGRGDPPPIPASECAHAVRLIFDAYRAAGEI
Ga0306921_115742591	3300031912	Soil	GSGRDDFIPQPEGWQAGYPRVIKEALEAYGRGDPPPIPASECAHAVRLIFDSYQAAG
Ga0306921_124325191	3300031912	Soil	LQILASGREETVPQPEGWQAGYPRAIREALEAYGRGDPPPIPASECAQAVRLIFDSYRAAGVR
Ga0310912_115353091	3300031941	Soil	LLRQVPGGLQIVGPGRDETIPQPADWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDAYRAAGVH
Ga0310913_106400551	3300031945	Soil	GLQILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECARAVLLIFDAYRVAGVL
Ga0310910_107834812	3300031946	Soil	RDEIIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECTHAVRLIFDSYHAAGER
Ga0310909_107642842	3300031947	Soil	ERLLLREIPEGLRLFAPDREEIIPQPEGWEAGYPRAVREALEAYGRGEPPPIPASECAHAIRLIFDSYRAADGS
Ga0307479_110421342	3300031962	Hardwood Forest Soil	LLRQVPGGLQILGPGRDETIPQPPDWVAGYPRAVREALEAHGRSDPPPIPASECAHAVRLIFDAYRAAGVT
Ga0318531_105741511	3300031981	Soil	VAGEKILLRQIPGGLQILAPGRDETIPQPPDWVAGYPRAVKEALEAYGGGDPPPIPAGECAHAVRLIFEAYRAAGVQ
Ga0318563_107745541	3300032009	Soil	LLLRQVSGGLQVLAPGRDETIPQPPDWQAGYPRAVREALEAYGRGDPPPIPASECARAVRLIFDSYRAAGVR
Ga0310911_105006381	3300032035	Soil	GRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDSYRAADEI
Ga0318558_104697722	3300032044	Soil	ILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECARAVLLIFDAYRVAGV
Ga0318506_100369314	3300032052	Soil	ETIPQPPDWVAGYPRAVREALEAYSRGDQPPIPASECVHAVRLIFDAYRAAGER
Ga0318570_103395371	3300032054	Soil	LQILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPASECAHAVRLIFDAYRAAGVR
Ga0318575_103479452	3300032055	Soil	MLLRQVPGGLQILAPGRDEMIPQPPDWVAGYPRAVREALEAYGRGEPPPIPASECARAVRLIFEAYRAAGVS
Ga0318505_101252334	3300032060	Soil	REETIPQPPDWVAGYPRAVREALEAYSRGDQPPIPASECVHAVRLIFDAYRAAGER
Ga0318514_106632111	3300032066	Soil	KIAGERLLLREIPEGAQLLAPDREEIIPQPEGWEAGYPRAVKEVLEAYGRGDPPPIPASECAHVVRLIFDSYRAAGVN
Ga0306924_117376942	3300032076	Soil	AANGLQLIGPGHDEFIPQPEGWRAGYPRAIREALEAYGRGDPPPIPASECTRAVRLIFESYRVAAHAA
Ga0306924_117839941	3300032076	Soil	LRQIPGGLQIVGSGRDEMIPEPPDWQTGYPRAVREALEAHGRGDPPPIAASECARAVRLIFDAYHAAGVQ
Ga0318577_103066081	3300032091	Soil	SEQKVAGERLLLRQVSGGLQVLAPGRDETIPQPPDWQAGYPRTVKEALEAYGRGDPPPIPASECARGSPDL
Ga0306920_1002990233	3300032261	Soil	LLRQAPGGLQILAPGRDETIPQPPDWVAGYPGAVKEALEAYGRGDPPPIPASECARAVRLIFDAYRVAGVL
Ga0306920_1003095353	3300032261	Soil	QAVGGLQLIAPGRDDFIPQPADWQAGYPRAIREALEAYGRGDPPPIPASECAHAVRLIFECYRAAGQR
Ga0310914_104476172	3300033289	Soil	LQILAPGRDETIPQPPDWVAGYPRAVREALEAYGRGDPPPIPTSECAHAVRLIFDSYRAADEI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102457

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences