Metagenome / Metatranscriptome Family F102564

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102564
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	81 residues
Representative Sequence	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILT
Number of Associated Samples	36
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	12.50 %
% of genes near scaffold ends (potentially truncated)	4.95 %
% of genes from short scaffolds (< 2000 bps)	3.96 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (96.040 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (35.644 % of family members)
Environment Ontology (ENVO)	Unclassified (46.535 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (51.485 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.14% β-sheet: 1.96% Coil/Unstructured: 54.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00078	RVT_1	1.98
PF00118	Cpn60_TCP1	0.99
PF01544	CorA	0.99
PF04827	Plant_tran	0.99
PF02816	Alpha_kinase	0.99
PF06677	Auto_anti-p27	0.99
PF00226	DnaJ	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.99
COG1645	Uncharacterized Zn-finger containing protein, UPF0148 family	General function prediction only [R]	0.99

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
All Organisms	root	All Organisms	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
cellular organisms	root	All Organisms → cellular organisms	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Thalassiosirophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Thalassiosirales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Thalassiosiraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Thalassiosira pseudonana	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300008263\|Ga0114349_1002324	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	9332	Open in IMG/M
3300008263\|Ga0114349_1033552	Not Available	2554	Open in IMG/M
3300008265\|Ga0114361_1016748	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	2735	Open in IMG/M
3300008265\|Ga0114361_1033784	Not Available	1710	Open in IMG/M
3300020205\|Ga0211731_11331118	All Organisms → cellular organisms → Eukaryota	655	Open in IMG/M
3300021336\|Ga0210307_1353274	Not Available	703	Open in IMG/M
3300033984\|Ga0334989_0050324	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	2286	Open in IMG/M
3300034064\|Ga0335001_0454656	Not Available	683	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	87.13%
Marine	Environmental → Aquatic → Marine	12.87%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	76.24%
Lentic	Environmental → Aquatic → Freshwater → Lentic	10.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.89%
Coastal	Environmental → Aquatic → Marine → Coastal	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	74.26%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	10.89%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	5.94%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	4.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.98%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	35.64%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	33.66%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	10.89%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.96%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	2.97%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.98%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	1.98%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.99%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.99%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.99%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.99%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002370	Freshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003754	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300007552	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007600	Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3	Environmental	Open in IMG/M
3300007861	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um	Environmental	Open in IMG/M
3300008263	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR	Environmental	Open in IMG/M
3300008265	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300011009	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA	Environmental	Open in IMG/M
3300012666	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020496	Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020503	Freshwater microbial communities from Lake Mendota, WI - 03MAY2011 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020548	Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021140	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental	Open in IMG/M
3300021317	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1088 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021336	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027183	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571 (SPAdes)	Environmental	Open in IMG/M
3300027210	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 (SPAdes)	Environmental	Open in IMG/M
3300027836	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027977 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m	Environmental	Open in IMG/M
3300028569 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m	Environmental	Open in IMG/M
3300033984	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental	Open in IMG/M
3300034064	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054	Environmental	Open in IMG/M
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental	Open in IMG/M
3300034068	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M
3300034167	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082	Environmental	Open in IMG/M
3300034168	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29631_1066491	3300002370	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRXQSTDAI
B570J40625_1000459821	3300002835	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNKHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDAITAGSVLKSAKK
Ga0005853_10190462	3300003754	Freshwater And Sediment	MAEACYTARATTKQQVLAGIEKLTLLKNENGQYTHDAILLLQKGITRVLVSQFNPSDPGNGMKKLLDDGTNLLTSVKATDARHSRTRPKRIEGSGGSGSCEHGH*
Ga0049080_100745261	3300005582	Freshwater Lentic	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDAI
Ga0102818_10859362	3300007552	Estuarine	MAEACYTARATTKQQVLDGINKLTLQTNEHGQYTHDAILLLQKGIRRVLISQFNPSDPGKGMEKLLDDGDNLLTRVKSTDAITAGSVVKMAKKRADELS
Ga0102828_10434982	3300007559	Estuarine	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDDDNILTRVQSTDAITAGSVLKSA
Ga0102920_10632492	3300007600	Estuarine	MAEACYTARATTKQQVLDGIDKLILQTNEHGQYTHDAILLLQKGIQRVLISQFNPSDLGKGMVKLLNDGDNILTRVQSTDAITAGSVLKSAKKRAD
Ga0105736_11180022	3300007861	Estuary Water	MAEACYTARATTKQQVLDGFEKLTLAKNKHGQFTHDAILLLCKGIKRVLISQFNPSNPGNGMTKLLELGDNILTLVKATDAITAESILKTSKAEG
Ga0114349_10023248	3300008263	Freshwater, Plankton	MAEACYMARATTKQQEVLDGINKLTLQTNDHGQYTHDAILLLQKVIQRVLVSQFNPSDPGKGMVKLLDNGDNILM*
Ga0114349_10124013	3300008263	Freshwater, Plankton	MAEACYTARATTKQQVLEGINKLTLQTNEHGQYTHDAILLIQKDIQRILISQFNPSNPGKGMVKLLDDEDNILT*
Ga0114349_10335522	3300008263	Freshwater, Plankton	MAEACYTARATTKQQVLDGINKLTLQTNEHGQYTYDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTCIQSTDASD*
Ga0114349_10794292	3300008263	Freshwater, Plankton	MARATTKQQVLEWINKLTLQINEHGQYMHDAILLLQKGIQCVLVSQFNPSDPGKGMVKLLDNGDNILTRVQSTDAITAGSVLKSAKKRADKISTMT
Ga0114349_10862511	3300008263	Freshwater, Plankton	CTARATTKQQVLDGINKLTLHTNKHGQYTHDAILLIQKGVQRILISQFNPSKPGKGMVKLLNDGDNILTRVQLTDALTAESVRKLAKK*
Ga0114349_10973471	3300008263	Freshwater, Plankton	MAEACYTARATTKQQVLYRINKLTLQTNERGQYMHETILLLQKGIQHVLVSQFNSSDPGKGMVKLLDDGDNILTRVQSTDAITAGSVLKSAKKRA
Ga0114349_10974081	3300008263	Freshwater, Plankton	MAEACVTAWATTKQQVLDGINKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNIL
Ga0114349_10990062	3300008263	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYMHDAILLLQKGIQHVLVSQFNPSDPGKGMVKLLDDGDNILT*
Ga0114349_11405113	3300008263	Freshwater, Plankton	MAEACYMARATTKQQVLDGINKLTLQTSKHGQYMHDVILLFQKGIQRVLVSQFNPSDPGKGMVKLLDDGDSILM*
Ga0114349_11405181	3300008263	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLISQFNPSDPGKGMVKLLDDGDNILTRIQSTDAITAGSVLKSAKK
Ga0114349_11548361	3300008263	Freshwater, Plankton	LNNTAMAEACYMARATTKQQVLDGINKLTLQTNEHGQYTHNAILLLQKGIRHVLVSQFNPSDPGKGMVKLLDDGNNKLTQVQSTDAITAGSVLKSAKK*
Ga0114349_11613342	3300008263	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYMHDAILLLQEGIQHVLISQFNPSDPGKGMVKLL
Ga0114349_11780141	3300008263	Freshwater, Plankton	MTEACYTARATTKQQVLNGINKLTLQTNEHGQYMHDAILLFQKGIQRVLVSPFNPSDPGKGMVKLLDDRDNILKRVQSTDAITAELNTQHVSAGHSRSMLHLGSC*
Ga0114349_11816651	3300008263	Freshwater, Plankton	LNNTAMAEACYTTGATTKQQVLDGINKLTLQINEHGQYTHNAILLLQKGIQHVLISQFNPSDPDKGMVKLLDDGDNILTRVQSTDAITAGSVLKSAKKRAD*
Ga0114349_12779151	3300008263	Freshwater, Plankton	MAEECYTARATTKQQVLDGIEKLTLQTNKHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLL
Ga0114349_12781952	3300008263	Freshwater, Plankton	MAEACYTARATTKQQVLDGINKLTLQTNEHGHYTHDAILLLQKGIQCVLINQFNPSDPGKGMVKLLNDGDNILTRIQSTDAITAGSVLKSAKKHAD*
Ga0114361_10139531	3300008265	Freshwater, Plankton	LNNTAMAEACYTARATRKQQVLDRINKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLGIGDNILT*
Ga0114361_10142015	3300008265	Freshwater, Plankton	MVEACYTARATTKQQVLNGINKLTLQTNKHGQYMHDAILLLQKGIQRVLVSQFNPSDP
Ga0114361_10148045	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVYDGINKMTLQTNEHGQYTHNAILLLQKGIQHVLISQFNPSDPGKGMVKLLDDGDNILT*
Ga0114361_10155582	3300008265	Freshwater, Plankton	MAESCCTARATTKQQVLDGINKLTLHTNKHGQYTHDAILLIQKGVQRILISQFNPSKPGKGMVKLLNDGDNILTRVQLTDALTAESVRKLAKK*
Ga0114361_10165624	3300008265	Freshwater, Plankton	MAEACYMARATTKQQVLNGINKLTLQTNEHGQYTHDAILLFQKGIQHVLVSQFNPSDPGKGMVKLLDDGDNILTRVNRLMRSWLDQFSNWKRDE*
Ga0114361_10167485	3300008265	Freshwater, Plankton	NNPAMAEACYTARATTKQQVLDGINKLTLQTNEHGHYTHDAILLLQKGIQCVLINQFNPSDPGKGMVKLLNDGDNILTRIQSTDAITAGSVLKSAKKHAD*
Ga0114361_102143911	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYMHDAILLLQEGIQHVLISQFNPSDPGKGMVKLLDDGDNILM*
Ga0114361_10289851	3300008265	Freshwater, Plankton	MAEECYTARATTKQQVLDGIEKLTLQTNKHGQYTHDAILLLQKGIQRVLVSQFNPSDP
Ga0114361_10337842	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLDWIDKLTLQTNEHGQYTQDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNIL
Ga0114361_10337961	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQTNKHGQYMHDAILLLQKVIQRVLVSQFNPSDPGKGMVKLLDDGDNILT*
Ga0114361_10476301	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLDVINKLTLQTNEHGQYTHNAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNY*
Ga0114361_10554162	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQINEHGQYTHDAILLLQKGIQRVLVSQFNPSDPAKGIVKLLNNGDNILTRIQSTDAITAGSVLKSAKKRAD*
Ga0114361_10554772	3300008265	Freshwater, Plankton	MLHGARATTKQHVLDGINKLTLQTNEHGQYTHDAILLIQKGIQHVLVSQFNPSDPGKGMVKLLDDGNNIDHGWICS*
Ga0114361_10585941	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLNGINKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILMRIQSTNAITAGSVLKSAQQQ*
Ga0114361_10591601	3300008265	Freshwater, Plankton	MAEACYTALATTKQQVLKGINKLTLQTNEHGQYTHDAILLLQKGIQCVLISQFNPSDPGKGMVKLLDDGDNILM*
Ga0114361_10805461	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYMHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDN
Ga0114361_11263322	3300008265	Freshwater, Plankton	MVEACYTARATTKQQVLNGIDKLTLQTNKHGQYTHDAILLLQKCIQRVLVSQFNPSDPGKGMV*
Ga0114361_12063362	3300008265	Freshwater, Plankton	MAEACYTARATTKQQVLDGIDKLTLQTNKHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMV
Ga0102815_106739972	3300009080	Estuarine	MAEACYTARATTKQEVIEGIGKLALQTNKHGQYTHNAILLLQKGIRRVLVSHFNPSNLGKGMEKLLE
Ga0129318_101472832	3300011009	Freshwater To Marine Saline Gradient	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYPHDAILLLQKVIQRVLVSQFNPSDPGKGMVKLLDDGDNILTQVQSTDAIT
Ga0157498_10747991	3300012666	Freshwater, Surface Ice	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDNGNNILTRIQ
Ga0207193_10319266	3300020048	Freshwater Lake Sediment	MAEACYTARATSKHQVLDGINKLTLQTNEHGQYTHDAILLIQNGIKRVLVSQFNPSDPGKGMVKLLDDGDNILTQVKSTDAITAGSVLK
Ga0207193_10855471	3300020048	Freshwater Lake Sediment	MAEACYTARATTKQQVLDGINKLTLQTNKHGQYTHDAILLIQKGIQCVLVSQFNPSDPGKGMVKLLDDG
Ga0211729_100130832	3300020172	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLIQKGIQRALVSQFNPSDPGKGMVKLLDD
Ga0211731_112628311	3300020205	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDDHGWIRSQIGKEMR
Ga0211731_113311181	3300020205	Freshwater	EACYTARATTKQQVLNGIDKLTLQTNEHGQYTHNAILLLQKGIQRILVSRFYPSDPGKAW
Ga0211731_115430121	3300020205	Freshwater	MAEACYTARATTKQQVLDGIGKLTLQTNEHGQYTLDAILLIQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDAITA
Ga0208230_10107161	3300020496	Freshwater	MAEACYTARATTKQQVLDGINKLTLHTNEHGQYTHDAILLIQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRVHSTDAITAGSILK
Ga0208363_10225561	3300020503	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDN
Ga0208856_10488801	3300020548	Freshwater	MAEACYTARATTKQQVLDGINKLTLHTNEHGQYTHDAILLIQKGIQRVLVSQFNPSDPGKGMVKLLDDGNNILTRVQSTDAITAGSVLKSAKKRADKLS
Ga0214168_11234691	3300021140	Freshwater	MAEACYTARATTKQQVLDGINKLTLHTNEHGQYTHDAILLIQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRVHSTDAITAGSVLKSAKKQANELTT
Ga0210309_10902031	3300021317	Estuarine	MAEACYTARATTKQQVLDGINKLTLQINKHRQYTHNAILLIQKGIQHVLVSQFNPSDPDKGMVKLLDDGDNIRT
Ga0210307_10112172	3300021336	Estuarine	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILT
Ga0210307_10566352	3300021336	Estuarine	MAEACYMARATTKQQVLDWINKLTLQTNKHGQYTHDAILLIQEGIQQVLVSQFNPSDPGQGMVKLLYNMDNILT
Ga0210307_11965811	3300021336	Estuarine	MAEACYTARATTKQQVLDGINKLTLQTNKHGQYTHDAILLIQKGIQHVLVSQFNPSDPGKGMVKLLDDGDNILTRVHSADAITAGSVL
Ga0210307_13532742	3300021336	Estuarine	MAEACYTARATTKQQVLDGINKLTLQTNEHGQYTHDAILLLQKGIWRVLISQFNPSDPGKGMEKLLDDGDNLL
Ga0208798_10383121	3300027183	Estuarine	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQ
Ga0208802_10555441	3300027210	Estuarine	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRI
Ga0209230_101331661	3300027836	Freshwater And Sediment	LSNNESRPRATTKQQVLEGIEKLTLLKNENGQYTHDAILLFQKGVTRVLTSQYNPSDPGNGMKK
Ga0209230_105388031	3300027836	Freshwater And Sediment	MADACYTAHATTKQQVLDGIEKLTLLKNENGQYTHNAILLFQKGITRVLASQFNPSDPGNGMKKLLDDGDSPHESEGNRRRHSRGRPKSIKG
Ga0209230_106257751	3300027836	Freshwater And Sediment	MADACYTARATTKQQVLDGIEKLTLLKNENGQYTHDAILLLQKGIIRVLNSQFNPSDPGNGMKKLLDNGDNLLTRVKATDAVTADAVLKESKDEAKS
(restricted) Ga0247834_10474852	3300027977	Freshwater	MADACYTARATTKQQVLEGIEKLTLLKNENGQYTHDAILLFQKGIMRVLTSQYNPSDPGNGMKKLLDRHSRGRPTSIEG
(restricted) Ga0247843_11278022	3300028569	Freshwater	ACYTARATTKQQVLEGIEKLTLLKNENGQYTHDAILLFQKGIMRVLTSQYNPSDPGNGMKKLLDRHSRGRPTSIEG
Ga0334989_0025762_240_497	3300033984	Freshwater	MAEACYTAQVTTKQQVLDGINKLTLHPNKHGQYTHIVILLIQKGIQGVLVSQFNPSNPGKGMVKLLDDRDREEVAAKQLLMVNPS
Ga0334989_0050324_2028_2285	3300033984	Freshwater	MAEACYTARATTKQQVSDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDAITAGS
Ga0334989_0073899_788_1057	3300033984	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLHKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDAITAGSVLK
Ga0334989_0218581_389_613	3300033984	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQHVLVSQFNPSDPGKGMVKLLNDGDNILT
Ga0334989_0398238_519_707	3300033984	Freshwater	MVEACYTARATTKQQVLDGIDKLTHQTNEHGQYTHDAILLLQKDIQRVLVSQFNPSDPGKGMV
Ga0334989_0609853_2_178	3300033984	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNKHGQYTHDAILLLQKGIQRVLVSQFNPSDPG
Ga0334989_0626779_241_510	3300033984	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKSMVKLLDDGDNILTRIQSTDAITAGSVLKS
Ga0335003_0343271_406_654	3300033995	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRVQSTDAIT
Ga0335005_0087865_2_235	3300034022	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQS
Ga0335005_0244877_836_1090	3300034022	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQSNEHGQYTHDAILLLQKGIQHVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDAITAG
Ga0335001_0212704_210_437	3300034064	Freshwater	MAETCDTARAMTKQQVLNGVNKLTLQTNKHGQYTHDAILLLQKGIRCVLISQFNLCNPGKGMEKVLIMAITCLCW
Ga0335001_0333341_2_271	3300034064	Freshwater	MAEACYMARATTKQQVIEGIGKLTLQTNKHRQCTHDAILLLQKGIHCVLVSQFNPSDPGKGMAKLLEDGSNLLTNVKSTDTITANSVLKA
Ga0335001_0359700_520_786	3300034064	Freshwater	MAEACYTARATTKQQVIKGIRKLALQTNEHGQYTHDAILLLQKGIRRVLVSQFNPSNPGKGMEKLLEDGTNLLTNVKSTNAITANSVLK
Ga0335001_0397239_116_424	3300034064	Freshwater	MAEACYTVRATTKQQVIKEIGKLTLQTNKHGQYMHNEILLLQKGVRHVFISQFNPSNPGKDMAKLLEDGTNLLTIVESTDAIMTNLILKAAKNKANAALKAA
Ga0335001_0409005_1_294	3300034064	Freshwater	MAEACYTARATTKQQVIKGIGKLALQTNEHGQYTHDAILLLQKGIPCILVSQFNPSDPGKGMEKLLKDGTNLLTNVKLTNAITANSVLKAAKAKADAA
Ga0335001_0454656_440_637	3300034064	Freshwater	MAQATTKQQVLDGIKKLTLQTNKNRQYTHNAILLLQKGIWCILQSQFNPSNPGKGTEKLLNTGDN
Ga0335001_0528815_314_622	3300034064	Freshwater	TTKQQVIEGIGKLALQTNEHGQYTHNAILLLQKGVHCVLVSQFNPSNPGKGKEKLLEDRTNLLTNVKLTNAITANSVLKAAKARADAASKASSTTITPTITS
Ga0335001_0626256_1_201	3300034064	Freshwater	MAEACYMARATTKQQVIKGIGKLALQTNKHGQYTHDAISLLQKGIRCILVSQFNPSDLGKGMEKLLE
Ga0335001_0645170_208_504	3300034064	Freshwater	MAEACYMARATTKQQVIKEIGKLTLQTNKHGQYTHDAILLLQKGICCVLASQFNPSDPGKGMAKLLKDGLNLLTNVKSTNAIAANSVFKVAKKKRKRH
Ga0335001_0768052_273_500	3300034064	Freshwater	MVWATTKQQVLSGINQLTLQTNEHGQYTHDAILLMHTCIWHVLTSQLNPSNLGKGIKKLLGDSDNLLMLVKSAHAI
Ga0335001_0768898_110_307	3300034064	Freshwater	MAEACYTVRATTKQQVIEGIGKLALQTNKHGQYTHDTILLLQKGIHRILVSQFNPSDPGKGCWNP
Ga0335019_0708327_1_270	3300034066	Freshwater	MAEACYTARATTKQQVLDGINKLTLHTNEHGQYTHDAILLIQKGIQRVLVSQFNPSDPGKGMVNFIDNGDNILTRVQSTDAITAGSVLKS
Ga0334990_0178769_1_195	3300034068	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHNAILLLQKGIQRVLVSQFNPSDPGKGMVKL
Ga0334990_0239593_3_221	3300034068	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLHKGIQRVLVSQFNPSDPGKGMVKLLDDGDNIL
Ga0334990_0380682_561_761	3300034068	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHDAILLLQKGIQRVLISQFNPSDPGKGMVKLLD
Ga0335060_0654293_2_211	3300034122	Freshwater	MAEACYTARATTKQQVLDGINKLTLHTNEHGQYTHDAILLIQKGIQHVLVSQFNPSDPDKGMVKLLDDDD
Ga0335017_0076149_1783_1980	3300034167	Freshwater	MAEACYTARATTKQQVLDGINKLTLQTNEHGQYTHDAILLLQKGIHCVFISQFNPSDPGKGMVKLL
Ga0335017_0192974_66_290	3300034167	Freshwater	MAEACYTARATTKQQVLDGIDKLNLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGNNILT
Ga0335017_0394131_2_223	3300034167	Freshwater	MAEACYMARATTKQQVLDGIGKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILT
Ga0335061_0002964_2_274	3300034168	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTNEHGQYTHNAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRIQSTDAITAGSVLKSA
Ga0335061_0087668_3_254	3300034168	Freshwater	MAEACYTARATTKQQVLDGINKLTLQTNEHGQYTLDAILLIQKGIQRVLVSQFNPSDPGKGMVKLLNDGDNIFTQVQLTDSITA
Ga0335061_0187115_891_1097	3300034168	Freshwater	MAEACYMARATTKQQVLDGIGKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDG
Ga0335061_0468833_2_229	3300034168	Freshwater	MAEACYTARATTKQQVLDGIDKLTLQTIEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNILTRI
Ga0335061_0566552_2_220	3300034168	Freshwater	MAEVYYTARATTKQQVLDRIDKLTLQTNEHGQYTHDAILLLQKGIQRVLVSQFNPSDPGKGMVKLLDDGDNIL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters