NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102638

Metagenome / Metatranscriptome Family F102638

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102638
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 53 residues
Representative Sequence MHEPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPISAGPIVGSDPFPEMS
Number of Associated Samples 61
Number of Associated Scaffolds 84

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 76.24 %
% of genes near scaffold ends (potentially truncated) 22.77 %
% of genes from short scaffolds (< 2000 bps) 93.07 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction Yes
3D model pTM-score0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (70.297 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(40.594 % of family members)
Environment Ontology (ENVO) Unclassified
(47.525 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(41.584 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.16
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 84 Family Scaffolds
PF00196GerE 13.10
PF00733Asn_synthase 9.52
PF05402PqqD 5.95
PF00106adh_short 1.19
PF13646HEAT_2 1.19
PF027373HCDH_N 1.19
PF01513NAD_kinase 1.19
PF00625Guanylate_kin 1.19
PF13471Transglut_core3 1.19

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 84 Family Scaffolds
COG0194Guanylate kinaseNucleotide transport and metabolism [F] 1.19
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 1.19
COG0287Prephenate dehydrogenaseAmino acid transport and metabolism [E] 1.19
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 1.19
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 1.19
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 1.19
COG1748Saccharopine dehydrogenase, NADP-dependentAmino acid transport and metabolism [E] 1.19
COG20843-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenaseLipid transport and metabolism [I] 1.19


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A70.30 %
All OrganismsrootAll Organisms29.70 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_111323393Not Available615Open in IMG/M
3300003324|soilH2_10034015Not Available1702Open in IMG/M
3300003324|soilH2_10034015Not Available1702Open in IMG/M
3300004114|Ga0062593_102717082Not Available564Open in IMG/M
3300004114|Ga0062593_102717082Not Available564Open in IMG/M
3300004156|Ga0062589_100876341Not Available823Open in IMG/M
3300004157|Ga0062590_100311210All Organisms → cellular organisms → Bacteria → Terrabacteria group1233Open in IMG/M
3300004463|Ga0063356_100393120All Organisms → cellular organisms → Bacteria1778Open in IMG/M
3300004480|Ga0062592_101240764Not Available700Open in IMG/M
3300004480|Ga0062592_101240764Not Available700Open in IMG/M
3300004480|Ga0062592_101373548Not Available671Open in IMG/M
3300004643|Ga0062591_101552889Not Available664Open in IMG/M
3300004643|Ga0062591_101958857Not Available603Open in IMG/M
3300005093|Ga0062594_101331320Not Available723Open in IMG/M
3300005093|Ga0062594_102076664Not Available610Open in IMG/M
3300005093|Ga0062594_102150099Not Available602Open in IMG/M
3300005331|Ga0070670_101624444Not Available594Open in IMG/M
3300005340|Ga0070689_100948617Not Available763Open in IMG/M
3300005353|Ga0070669_100981605Not Available724Open in IMG/M
3300005440|Ga0070705_101306301Not Available602Open in IMG/M
3300005440|Ga0070705_101306301Not Available602Open in IMG/M
3300005440|Ga0070705_101956756Not Available500Open in IMG/M
3300005444|Ga0070694_101712345Not Available535Open in IMG/M
3300005545|Ga0070695_100473225Not Available964Open in IMG/M
3300005549|Ga0070704_100232791All Organisms → cellular organisms → Bacteria → Terrabacteria group1504Open in IMG/M
3300005615|Ga0070702_101734620Not Available520Open in IMG/M
3300007004|Ga0079218_10275416All Organisms → cellular organisms → Bacteria → Terrabacteria group1348Open in IMG/M
3300007004|Ga0079218_11214936Not Available783Open in IMG/M
3300009156|Ga0111538_10512811All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1520Open in IMG/M
3300009553|Ga0105249_10864131Not Available970Open in IMG/M
3300009553|Ga0105249_10864131Not Available970Open in IMG/M
3300010039|Ga0126309_10430101Not Available797Open in IMG/M
3300010040|Ga0126308_10527041Not Available800Open in IMG/M
3300012897|Ga0157285_10096039Not Available808Open in IMG/M
3300012911|Ga0157301_10377558Not Available542Open in IMG/M
3300014259|Ga0075311_1069455All Organisms → cellular organisms → Bacteria → Terrabacteria group713Open in IMG/M
3300014302|Ga0075310_1069101Not Available711Open in IMG/M
3300014302|Ga0075310_1069101Not Available711Open in IMG/M
3300014745|Ga0157377_10991056Not Available635Open in IMG/M
3300015201|Ga0173478_10369796Not Available676Open in IMG/M
3300015373|Ga0132257_102813698Not Available634Open in IMG/M
3300017965|Ga0190266_10953641Not Available569Open in IMG/M
3300017965|Ga0190266_10953641Not Available569Open in IMG/M
3300018422|Ga0190265_10292603Not Available1695Open in IMG/M
3300018422|Ga0190265_10292603Not Available1695Open in IMG/M
3300018422|Ga0190265_11653652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria751Open in IMG/M
3300018422|Ga0190265_12629153Not Available601Open in IMG/M
3300018422|Ga0190265_12629153Not Available601Open in IMG/M
3300018432|Ga0190275_10000030All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia194892Open in IMG/M
3300018432|Ga0190275_10155056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2115Open in IMG/M
3300018432|Ga0190275_10245036Not Available1726Open in IMG/M
3300018432|Ga0190275_12785489Not Available565Open in IMG/M
3300018469|Ga0190270_10140422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1941Open in IMG/M
3300018469|Ga0190270_10271927All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1490Open in IMG/M
3300018469|Ga0190270_11873610Not Available656Open in IMG/M
3300018469|Ga0190270_11873610Not Available656Open in IMG/M
3300018469|Ga0190270_12882290Not Available543Open in IMG/M
3300018481|Ga0190271_11138550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia903Open in IMG/M
3300018481|Ga0190271_11138550All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia903Open in IMG/M
3300019356|Ga0173481_10247138Not Available801Open in IMG/M
3300019377|Ga0190264_10714246Not Available743Open in IMG/M
3300019377|Ga0190264_10714246Not Available743Open in IMG/M
3300025925|Ga0207650_10418920All Organisms → cellular organisms → Bacteria → Terrabacteria group1111Open in IMG/M
3300025936|Ga0207670_10459515All Organisms → cellular organisms → Bacteria → Terrabacteria group1028Open in IMG/M
3300025961|Ga0207712_11520408Not Available600Open in IMG/M
3300025972|Ga0207668_12112092Not Available507Open in IMG/M
3300027636|Ga0214469_1140112Not Available687Open in IMG/M
3300027636|Ga0214469_1140112Not Available687Open in IMG/M
3300027650|Ga0256866_1113955Not Available731Open in IMG/M
3300027650|Ga0256866_1113955Not Available731Open in IMG/M
3300027907|Ga0207428_10184035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1577Open in IMG/M
3300027907|Ga0207428_10184035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1577Open in IMG/M
3300028721|Ga0307315_10052603All Organisms → cellular organisms → Bacteria → Terrabacteria group1137Open in IMG/M
3300028755|Ga0307316_10089772All Organisms → cellular organisms → Bacteria → Terrabacteria group1065Open in IMG/M
3300030006|Ga0299907_10032719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales4045Open in IMG/M
3300030006|Ga0299907_10685758Not Available786Open in IMG/M
3300030006|Ga0299907_10685758Not Available786Open in IMG/M
3300030785|Ga0102757_11187214Not Available685Open in IMG/M
3300030829|Ga0308203_1077454Not Available543Open in IMG/M
3300030829|Ga0308203_1084704Not Available526Open in IMG/M
3300030902|Ga0308202_1019297All Organisms → cellular organisms → Bacteria → Terrabacteria group1053Open in IMG/M
3300030902|Ga0308202_1076088Not Available659Open in IMG/M
3300030902|Ga0308202_1154622Not Available513Open in IMG/M
3300030988|Ga0308183_1213775Not Available508Open in IMG/M
3300030993|Ga0308190_1193284Not Available509Open in IMG/M
3300031039|Ga0102760_10936506Not Available519Open in IMG/M
3300031091|Ga0308201_10268132Not Available595Open in IMG/M
3300031123|Ga0308195_1015609All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes884Open in IMG/M
3300031228|Ga0299914_10031385All Organisms → cellular organisms → Bacteria4431Open in IMG/M
3300031228|Ga0299914_10134127All Organisms → cellular organisms → Bacteria → Terrabacteria group2191Open in IMG/M
3300031228|Ga0299914_10332411All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1334Open in IMG/M
3300031228|Ga0299914_10958244Not Available701Open in IMG/M
3300031228|Ga0299914_11145021Not Available626Open in IMG/M
3300031229|Ga0299913_10124419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2534Open in IMG/M
3300031229|Ga0299913_11043252Not Available782Open in IMG/M
3300031422|Ga0308186_1038752Not Available514Open in IMG/M
3300031731|Ga0307405_10152711All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1625Open in IMG/M
3300031731|Ga0307405_10152711All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1625Open in IMG/M
3300031824|Ga0307413_10054736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2423Open in IMG/M
3300031852|Ga0307410_10306247Not Available1255Open in IMG/M
3300032126|Ga0307415_100245029All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1452Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil40.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil11.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil8.91%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere4.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.96%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands2.97%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.97%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.97%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.98%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.98%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.99%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300014259Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1EnvironmentalOpen in IMG/M
3300014302Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2EnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027636Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57 HiSeqEnvironmentalOpen in IMG/M
3300027650Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeqEnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030785Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030829Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030902Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030988Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030993Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031039Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031091Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031123Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031422Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11132339313300000956SoilMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPISADPIVGSDPF
soilH2_1003401523300003324Sugarcane Root And Bulk SoilVAETSYEAPRVTDYGDLRELTANNAVPMFVDVPQGTQVGTDPIVGSDPFPEMS*
soilH2_1003401533300003324Sugarcane Root And Bulk SoilMHEPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPISAGPIVGSDPFPEMS*
Ga0062593_10271708213300004114SoilGGRVPENSYEAPKVTDYGELRDLTANNALPMFVDVPQGTQVGTDPIVGSDPFPEMS*
Ga0062593_10271708223300004114SoilMQEPKYETPAVTDYGDLEEITANNAIPQFVDVPQGTPITQGPTVGSDPFPEMS*
Ga0062589_10087634123300004156SoilVPENSYEAPKVTDYGELRDLTANNALPMFVDVPQGTQVGTDPIVGSDPFPEMS*
Ga0062590_10031121023300004157SoilMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPISADPIVGSDPFPEMS*
Ga0063356_10039312033300004463Arabidopsis Thaliana RhizosphereMQTPKYEAPTVTDYGDLQEITANNAIPQFVDVPQGTPISDGPIVGSDPFPEMS*
Ga0062592_10124076423300004480SoilVPENSYEAPKVTDYGDLRELTANNAVPMFVDVPQGTQVGTDPIVGSDPFPEMS*
Ga0062592_10124076433300004480SoilMHEPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS*
Ga0062592_10137354823300004480SoilVAEKERAGMHEPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPISADPIVGSDPFPEMS*
Ga0062591_10155288933300004643SoilPLGGRVPENSYEAPKVTDYGELRDLTANNALPMFVDVPQGTQVGTDPIVGSDPFPEMS*
Ga0062591_10195885723300004643SoilMAEKERAGMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPISADPIVGSDPFPEMS*
Ga0062594_10133132013300005093SoilVDTDAPKYEAPRVTDYGDLEELTANNNIPQFVDVPQGTPVGQGPIIGSDPFPEMS*
Ga0062594_10207666423300005093SoilMEPVKYEQPTVTDYGSLAELTANNAIPAFVDVPQGTPIGTDPVVGNDPFPEMS*
Ga0062594_10215009923300005093SoilMHEPKYEPPTVTDYGDLEELTANNAIPQFVDVPQGTPITSGPTIGSDPFPEMS*
Ga0070670_10162444423300005331Switchgrass RhizosphereVAEKERAGMHEPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS*
Ga0070689_10094861713300005340Switchgrass RhizosphereMHEPKYEPPTVTDYGDLEEITANNAIPQFVDVPQGTPITSGPTIGSDPFPEMS*
Ga0070669_10098160513300005353Switchgrass RhizosphereMHEPKYEAPTVTDYGDLEEITANNAIPQFVDVAQGTPITPGPIVGSDPFPEMS*
Ga0070705_10130630113300005440Corn, Switchgrass And Miscanthus RhizosphereMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPITPGPIVGSEPFPEMS*
Ga0070705_10130630123300005440Corn, Switchgrass And Miscanthus RhizosphereVPENSYEAPKVTDYGDLREITANNAVPMFVDVPQGTQVGTDPIVGSDPFPEMS*
Ga0070705_10195675623300005440Corn, Switchgrass And Miscanthus RhizospherePTVTDYGDLEEITANNAIPQFVDVPQGTPITSGPTIGSDPFPEMS*
Ga0070694_10171234523300005444Corn, Switchgrass And Miscanthus RhizosphereYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS*
Ga0070695_10047322523300005545Corn, Switchgrass And Miscanthus RhizosphereVPENSYEAPKVTDYGDLREITANNAVPMFVDVPQGTQVGTDPIVGSDPFPEM
Ga0070704_10023279123300005549Corn, Switchgrass And Miscanthus RhizosphereMHEPRYETPTVTDYGDLEEITANNAIPQFVDVPQGTPITPGPIVGSEPFPEMS*
Ga0070702_10173462023300005615Corn, Switchgrass And Miscanthus RhizosphereMHEPKYEPPTVTDYGDLEEITANNAIPQFVDVPQGTPITPGPIVGSDP
Ga0079218_1027541613300007004Agricultural SoilDYGDLQEITANNAVPQFSDVPQGTPISEGPIVGSDPFPQMS*
Ga0079218_1121493623300007004Agricultural SoilLQTPIYESPKVTDYGDLQEVTANNAIPQFVDVPQGTPVGTDPIVGNDPFPEMS*
Ga0111538_1051281113300009156Populus RhizosphereVPDNSYEAPKVTDYGDLRELTANNAVPMFVDVPQGTQVGTDPIVGSDPFPEMS*
Ga0105249_1086413123300009553Switchgrass RhizosphereMHKPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS*
Ga0105249_1086413133300009553Switchgrass RhizosphereVPENSYEAPKVTDYGDLRELTANNAVPMFVDVPQGTQDGTDPIVGSDPFPEMS*
Ga0126309_1043010123300010039Serpentine SoilMGKEPYETPTLTDYGELADLTASNLIPSFVDVPQGTPTVPGPIVGDDPFPEMS*
Ga0126308_1052704123300010040Serpentine SoilMGTEPYETPTLTDYGDLAEMTASNLIPSFVDVPQGTPTVPGPIVGDDPFPEMS*
Ga0157285_1009603923300012897SoilMAEKERAGMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPITQGPTVGSDPFPEMS*
Ga0157301_1037755823300012911SoilMAEKERAGMHEPKYETPPVTDYGDLEEITANNAIPQFVDVPQGTPISADPIVGSDPFPEMS*
Ga0075311_106945513300014259Natural And Restored WetlandsLQEITANNAIPQFSDVPQGTPISDGPIVGSDPFPQMS*
Ga0075310_106910123300014302Natural And Restored WetlandsMQTPKYEEPTVTDYGDLQEITANNAIPQFSDVPQGTPISDGPIVGSDPFPQMS*
Ga0075310_106910133300014302Natural And Restored WetlandsYGDLQEITANNAIPQFVDVPQGTPIGDGPIVGDDPFPEMS*
Ga0157377_1099105623300014745Miscanthus RhizosphereMHEPKYEPPTVTDYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS*
Ga0173478_1036979613300015201SoilERAGMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS*
Ga0132257_10281369823300015373Arabidopsis RhizosphereMHEPKYETPTVVDYGDLEEITANNAIPQFVDVPQGTPITPGPIVGSDPFPEMS*
Ga0190266_1095364113300017965SoilMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPITPGPIVGSDPFPEMS
Ga0190266_1095364123300017965SoilVPENSYEAPKVTDYGDLREITANNAVPMFVDVPQGTQVGTDPIVGSDPFPEMS
Ga0190265_1029260323300018422SoilMADARTQSPVYEAPTLVDYGDLREITANNAIPMFVDVPQGTPVGAGPITGDEPFPQMS
Ga0190265_1029260333300018422SoilMKTPDYEKPRVEDYGDLTEITANNAIPMFVDVPQGTPVTGAPITGDEPFPEMS
Ga0190265_1165365223300018422SoilMGTPEYEAPRLTDYGELQELTANNAVPEFVDVPQGTPVGTDPIVGNDPFPEMS
Ga0190265_1262915313300018422SoilQLGGCAVLDKSYEAPSVTDYGDLKDLTANNAVPMFVDVPQGTQVGVDPIVGDDPFPEMS
Ga0190265_1262915323300018422SoilMQKPTYETPTVADYGDLEEITANNAIPAFVDVPQGTPISEGPIAGSEPFPQMS
Ga0190275_100000301463300018432SoilMYDERKYEAPAVTDYGDLQELTANNAIPMFVDVPQGTPATPGPIVGDDPEPGMS
Ga0190275_1015505623300018432SoilMEPVRYQQPKITDLGDLAELTANNAVPQFVDVPQGTPVGTEPVVGSDPHPQMS
Ga0190275_1024503643300018432SoilVEYQAPTLSDYGDLKEITANNSIPQFVDVPQGTPVDGSPIVGDDPFPEMS
Ga0190275_1278548923300018432SoilMIDKNAKYEVPRLTDYGDLQELTANNAIPQFVDVPQGTPIDGSPIVGDDPFPEMS
Ga0190270_1014042223300018469SoilMEPVKYEQPTVTDYGNLAELTANNAIPAFVDVPQGTPIGTDPVVGNDPFPEMS
Ga0190270_1027192723300018469SoilMERYETPALTDYGDLREITANNAVPAFVDVPQGTPAVPGPIVGDDPFPEMS
Ga0190270_1187361023300018469SoilMSHGKYELPTVTDYGDLQEITANNAIPQFVDVPQGTPVDGSPIVGDDPFPEMS
Ga0190270_1187361033300018469SoilMQIPGYEEPMITDYGELQEITANNAVPQFVDVPQGTPVTAGPIVGDEPFPQMS
Ga0190270_1288229013300018469SoilMEPVKYQPPTVTDYGDLAELTANNAIPQFVDVPQGTPIGPDPVVGNDPFPQMS
Ga0190271_1113855033300018481SoilMETLRYEQPTLTDYGDLAELTANNAVPQFVDVPQGTPVGTDPVVGSDPYPQMS
Ga0190271_1113855043300018481SoilMPGMETVRYERPSVTDHGDLQEITANNMIPQFVDVPQGTPIGMDPVVGSDPFPQMS
Ga0173481_1024713823300019356SoilMHEPKYETPTVTDYGDLEEITANNAIPQFVDVPQGTPISADPIVGSDPFPEMS
Ga0190264_1071424613300019377SoilGSPPRLIGEAKGLQTPNYESPTVTDYGDLQEITANNAIPQFVDVPQGTPIGDGPIVGDDPFPEMS
Ga0190264_1071424623300019377SoilMQTPKYEEPAITDYGDLQEITANNAVPQFSDVPQGTPISDGPIVGSDPFPQMS
Ga0207650_1041892023300025925Switchgrass RhizosphereVAEKERAGMHEPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPISADPIVGSDPFPEM
Ga0207670_1045951533300025936Switchgrass RhizosphereTDYGDLEEITANNAIPQFVDVPQGTPITSGPTIGSDPFPEMS
Ga0207712_1152040823300025961Switchgrass RhizosphereMHKPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS
Ga0207668_1211209213300025972Switchgrass RhizosphereVTDYGDLEEITANNAIPQFVDVPQGTPITPGPIVGSDPFPEMS
Ga0214469_114011213300027636SoilIGRLHVLDKSYEAPRVTDYGDLKDLTANNAIPMFVDVPQGTQVGVDPVIGDDPFPEMS
Ga0214469_114011223300027636SoilMHTPKYEAPTVVDYGDLEEITANNAIPAFVDVPQGTAISDGPIVGDEPFPQMS
Ga0256866_111395513300027650SoilVQTPQYQPPRIKDYGELEEITANNAIPQFVDVPQGTPVIGDGPI
Ga0256866_111395523300027650SoilMSPEKYEAPVVTDYGDLKDLTANNAIPQFVDVPQGTPVGPDPIVGDEPFPQMS
Ga0207428_1018403543300027907Populus RhizosphereMHEPKYEAPTVTDYGDLEEITANNAIPQFVDVPQGTPINAGPIVGSDPFPEMS
Ga0207428_1018403553300027907Populus RhizosphereVPENSYEAPKVTDYGDLRELTANNAVPMFVDVPQGTQVGTDPIVGSDPFPEMS
Ga0307315_1005260333300028721SoilMDTPEYQAPKVTDYGDLEELTANNNIPAFVDVPQGTPVGQGPIVGSDPYPDMS
Ga0307316_1008977213300028755SoilRDAPNYEAPRVTDYGDLEELTANNNIPAFVDVPQGTPATGQGPIVGSDPYPDMS
Ga0299907_1003271933300030006SoilVQTPQYQPPRIKDYGELEEITANNAIPQFVDVPQGTPVIGDGPIVGDDPFPGMS
Ga0299907_1068575823300030006SoilMHTPKYEAPTVVDYGDLEEITANNAIPAFVDVPQGTPIGEGPIVGSEPFPQMS
Ga0299907_1068575833300030006SoilVPDKSYEAPRVTDYGDLKDLTANNAIPMFVDVPQGTQVGTDPIVGDDPFPEMS
Ga0102757_1118721433300030785SoilMDSSTPKYEAPSVTDYGNLEELTANNNIPAFVDVPQGTPVGQGPIVGSEPFPEGMS
Ga0308203_107745413300030829SoilMDAPKYEAPKVTDYGDLEELTANNNVPAFVDVPQGTPVGQGPIVGSDPYPDMS
Ga0308203_108470433300030829SoilMDPRTPKYQTPKLTDYGDLTEITANNSIPQFVDVPQGTPVGQGPIVGDDPFPEMS
Ga0308202_101929723300030902SoilMDTPEYQAPKVTDYGDLEELTANNNVPAFVDVPQGTPVGQGPIVGSDPYPDMS
Ga0308202_107608833300030902SoilMDRPKYEVPSVTDYGDLQELTANNNVPVVTDVPQGTPVSPGPIVGDDDNLS
Ga0308202_115462213300030902SoilVDSKYESPTVTDYGDLQALTANNNVPVVTDVPQGTPVSPGPIVGSDDNLS
Ga0308183_121377513300030988SoilMDSSTPKYEAPSVTDYGDLEELTANNNVPAFVDVPQGTPVGQGPIVGSDPYPDMS
Ga0308190_119328413300030993SoilMDRDAPNYEAPRVTDYGDLEELTANNNIPAFVDVPQGTPATGQGPIVGSDPYPDM
Ga0102760_1093650613300031039SoilMEYEAPKVTDYGDLQELTANNGVPVFVDVPQGTPVQGNPIIVGDEPFPEMS
Ga0308201_1026813233300031091SoilMDRDAPNYEAPRVTDYGDLEELTANNNIPAFVDVPQGTPATGQGPIVGSDPYPDMS
Ga0308195_101560923300031123SoilMDSSTPKYEAPRVTDYGDLEELTANNNIPAFVDVPQGTPVGQGPIVGSDPYPDMS
Ga0299914_1003138543300031228SoilMQTPDYEGPTITDYGDLQEITANNAIPQFSDVPQGTPISDGPIVGSDPFPQMS
Ga0299914_1013412723300031228SoilVPDKSYEAPMVTDYGDLKDLTANNAIPMFVDVPQGTQVGVDPVIGDDPFPEMS
Ga0299914_1033241113300031228SoilMHTPKYEAPTVVDYGDLEEITANNAIPAFVDVPQGTPISEGPIVGDEPFPQMS
Ga0299914_1095824413300031228SoilMHTPKYEAPTVVDYGDLEEITANNAIPAFVDVPQGTPISEGPVVGDEPFPQMS
Ga0299914_1114502113300031228SoilITDYGDLQQITANNAVPQFVDVPQGTPVTAGPIVGDEPFPQMS
Ga0299913_1012441913300031229SoilMQKPTYETPTIADYGDLEEITANNAIPAFVDVPQGTPIGEGPIVGDDPFPEMS
Ga0299913_1104325223300031229SoilVLDKSYEAPSVTDYGHLKDLTANNAIPMFVDVPQGTQVGVDPIVGDDPFPEMS
Ga0308186_103875213300031422SoilMDSNTPEYEAPSVTDYGDLEELTANNNIPAFVDVPQGTPVGQGPIVGSDPYPDMS
Ga0307405_1015271113300031731RhizospherePKYEAPTVTDYGDLHEITANNAIPQFVDVPQGTPINEGPTVGSDPFPEMS
Ga0307405_1015271123300031731RhizosphereMATQDYETPSVTDYGTLEDVTANNAVPMFVDVPQGTQVGTDPIVGSDPFPEMS
Ga0307413_1005473613300031824RhizosphereMKTPKYEAPTVTDYGDLHEITANNAIPQFVDVPQGTPINEGPTVGSD
Ga0307410_1030624733300031852RhizosphereMKTPKYEAPTVTDYGDLHEITANNAIPQFVDVPQGTPINEGPTVGSDPFPEMS
Ga0307415_10024502913300032126RhizosphereMKTPKYEAPTVTDYGDLHEITANNAIPQFVDVPQGTPINEGPTVGSDP


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