Metagenome Family F102641

Basic Information
Family ID	F102641
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	72 residues
Representative Sequence	VTEYAERFKHLNCFYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKHEVEGQRPQQP
Number of Associated Samples	7
Number of Associated Scaffolds	99

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Unclassified (89.109 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules (51.485 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.64% β-sheet: 0.00% Coil/Unstructured: 64.36%
Feature Viewer

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Pfam ID	Name	% Frequency in 99 Family Scaffolds
PF08284	RVP_2	28.28
PF00078	RVT_1	22.22
PF03732	Retrotrans_gag	9.09
PF00665	rve	7.07
PF07727	RVT_2	2.02
PF10551	MULE	1.01
PF00634	BRCA2	1.01
PF03108	DBD_Tnp_Mut	1.01
PF14214	Helitron_like_N	1.01
PF14244	Retrotran_gag_3	1.01
PF13976	gag_pre-integrs	1.01

COG ID	Name	Functional Category	% Frequency in 99 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	7.07
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	7.07
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	7.07
COG4584	Transposase	Mobilome: prophages, transposons [X]	7.07

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
All Organisms	root	All Organisms	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
cellular organisms	root	All Organisms → cellular organisms	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Fabales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Fabaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Papilionoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
50 kb inversion clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
NPAAA clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
indigoferoid/millettioid clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Phaseoleae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	10.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Vigna	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	4.95 %
Glycine	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3.96 %
Glycine subgen. Soja	subgenus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Glycine max	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	3.96 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006943\|Ga0099822_1004881	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	17494	Open in IMG/M
3300006943\|Ga0099822_1006041	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	15788	Open in IMG/M
3300006943\|Ga0099822_1006831	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	14810	Open in IMG/M
3300006943\|Ga0099822_1028025	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	4562	Open in IMG/M
3300006943\|Ga0099822_1037519	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	2944	Open in IMG/M
3300021320\|Ga0214544_1000332	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	81921	Open in IMG/M
3300021320\|Ga0214544_1008322	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	17355	Open in IMG/M
3300021320\|Ga0214544_1008903	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	16270	Open in IMG/M
3300021320\|Ga0214544_1014180	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	9129	Open in IMG/M
3300021320\|Ga0214544_1016707	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	6955	Open in IMG/M
3300021320\|Ga0214544_1020663	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	4591	Open in IMG/M

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	100.00%

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0099822_100292620	3300006943	Root Nodules	VAEYAEKFKHLSRFYNMPLDEEWRCRKFENGLKGDIRLMVALLSIKDFATLVEKAKVIEKMKVKVEAQQSRQ*
Ga0099822_100422312	3300006943	Root Nodules	VVEYVERFKHLSHFYTLPLDEEWRCCKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQP*
Ga0099822_100487514	3300006943	Root Nodules	VSEYVERFKHLSHFYTLPLDEEWRCRKFENGLCGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRRQQPQPPQRIG*
Ga0099822_100488116	3300006943	Root Nodules	MLVALYVERFKHLGRFYTIPLDEEWQCKKFENDLCVDIRLMVAPLSIKDFAALVEKGKVMEKMKVEVEAQCPEQ*
Ga0099822_10053121	3300006943	Root Nodules	VTEYAERFKHLSRFYTLPLDEERRCRKFENGLRGDIRLMVVPLSIKDFATLVEKARVMEKMKREVEGQRPQQPQQSQRVRGPSR*
Ga0099822_100556219	3300006943	Root Nodules	VIEYAEKFKHLSRFYTLPFDDKWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKAKVIEKMKREVEGLRP*
Ga0099822_100574911	3300006943	Root Nodules	VEFLQVTQGGKSVIEYAEKFKHLGRFYTLPLDEEWRCHKFENDLRGDICLMVAPLSTKDFAALAEKARVMKKMKNEVEGQRSQQ*
Ga0099822_100574931	3300006943	Root Nodules	MAYYAEKFKHLSRFYTLPLDEKWRCRKFENGLRGDIHLMVAPLSIKDFAALVEKARVMEKMKNQVEG*
Ga0099822_100604130	3300006943	Root Nodules	VAEYAEKFKHLSRFYTMPLDEEWRCRKFKNGLRGDLRLMVALLSIKDFAALVEKARVMEKMKVEVETQHLHQ*
Ga0099822_10068314	3300006943	Root Nodules	MTKYAEKFKHLSHFYTLPLDEEWRCRKFENDLKGDVWLMVAPLSIKDFATLVKKARMMEKMKNEVEGQRL*
Ga0099822_10083426	3300006943	Root Nodules	VAEYAERFKHLGRFYTMPLDEEWRCKNFENGLRGDIRLMVAPLSIKDFTALVERARVMEQMKAEVEAQQSQQ*
Ga0099822_10124505	3300006943	Root Nodules	VTESAKRFKHLSRFYTLPLDEEWQCRKFKNCLCGDIRLMVAPLFIKDFAALVEKARVMEKMKREVEGQHL*
Ga0099822_101270516	3300006943	Root Nodules	VSEYAEKFKQLGRFHILKMAEDWQCRKFKNGLRGDLKLMVAPLSIKEFPALVEMARVMEKLKAEVEAQ*
Ga0099822_101380215	3300006943	Root Nodules	MTKYAEKFKHLNCFYTLPFNEEWRCRKFENGLRGDIRLMMAPLSIKDFVALVEKARVMEKMKREVEGQRPQQP*
Ga0099822_10151475	3300006943	Root Nodules	VADYTEKFKHLNRFYTLSLDEEWRCWKFENALSGDIRLMVAPLSIKDFAALVEKARVNGEDEE*
Ga0099822_10154934	3300006943	Root Nodules	VANYAEKFKHLTRFYTLPLDEEWRCRKFKNGLRDNIRLMVAPLSIKDFAALVEKARVMEKMKNEVEGQRLQQPQKIGGPSGSS*
Ga0099822_101676612	3300006943	Root Nodules	VAKYVERFKHLNRFYTLPLNEEWRCRKFENGLRDDMRLMVAPLSIKDFVALVEKARVMEKMKHEVEGHQPQQP*
Ga0099822_101900912	3300006943	Root Nodules	VTEYAERFKHLSRFYTLPLDEEWRCRKFESGLRGDIRLMVAPLSIKDFAALVEKAMVMEKMKREVESQRPQQP*
Ga0099822_10193073	3300006943	Root Nodules	VAEYAERFKHLSRFYTLPLDEEWRCHKFENGLCGDVLLMVALMSIKDFPALMEKARVMEKMKHEVEGQRPQQSQ*
Ga0099822_10195778	3300006943	Root Nodules	VAEYAERFKHLIRFYTLPLNEELRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQPQ*
Ga0099822_102022212	3300006943	Root Nodules	VAEYAEKFKHLSRFYTMPLDKEWRCRKFENGLRGDLCLIVAPLSIKDFTALVEKAKVMEKMKVEVETQHPHQ*
Ga0099822_10215363	3300006943	Root Nodules	VADYAERFKHLSRCYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKAQVMEKMKNEVEGQRPQ*
Ga0099822_10220796	3300006943	Root Nodules	VTEYAERYKHLSRFYTLPLDEEWRCRKFENGLCGDIRLIVAPLCIKDFATLVEKTRVMEKMKREVEGQRPQQPQQP*
Ga0099822_10230864	3300006943	Root Nodules	VTDYAEKFKHLSRFYTLPLDEEWSCWKFENGLRGDIRLMVAPISIQDFAALVEKAKVMEKMKNEVEG*
Ga0099822_10245462	3300006943	Root Nodules	VTEYAEKFKHLICFYTMPLDKEWRCRKFENGLRGDLRLLVAPLSIKDFAALVEKARVMEKMKVEVETQHPHQ*
Ga0099822_10245579	3300006943	Root Nodules	VFSFSLFFLRSYIKHLGRFFTMTLDEEWFRKFENDLRGDIFLMVASLSIKDFAALVEKARVMERMKVEVEAQHPQQ
Ga0099822_102495610	3300006943	Root Nodules	VLECAEKFKHLSRFYTLSLDEEWRCRKFENGLRGDIRYMVAPLSIKDFVALVEKARVMEKIKREVEGQRP*
Ga0099822_10261411	3300006943	Root Nodules	GKTVTEYAERFKHLSRFYTLPLDEEWRCRKFKNGLRGDIRLMVAPLSIKDFAALVEKVRVMEKMKC*
Ga0099822_10276573	3300006943	Root Nodules	VTEYVEKFKHLGCFYTLPLDEEWRCRKFENGLRGDICLMVALLSIKDFAALVEKAKVMEKMKNEVEGQRPQH*
Ga0099822_10280256	3300006943	Root Nodules	VTEYAERFKHLSRFYTLPLDKEWRCRKFKNGLRGDIRLMVALLSIKDFATLVEKAKVMGKMKREVEGQRPQQPQPP*
Ga0099822_10300807	3300006943	Root Nodules	VTEYAEKFKYFNHFYTLPLNEEWRCQKFENGLWGDIHLMVAPLSIMDFATLVEKAKVMEKMKHISCYVIMTG*
Ga0099822_10328896	3300006943	Root Nodules	VTEYVERFKHLNRFYTLPLDEEWRCRKFENGVRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQP*
Ga0099822_10369274	3300006943	Root Nodules	VAEYAKKFKHLSRFYTMPLDKEWRCRKFENDLRVDLRLMVAPLSIKDFVALVEKARVMKKMKVEVETQHPHQ*
Ga0099822_10372673	3300006943	Root Nodules	VTKYAERFKHLSRFYNLPLDEEWRCRKFENGLRDDIRLTLAPLSIKDFAALVEKARVMEKMKREVEGQRPQ*
Ga0099822_10375195	3300006943	Root Nodules	VTEYAERFKHLNCFYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKHEVEGQRPQQP*
Ga0099822_10466462	3300006943	Root Nodules	LTQGGKSLTEYAKKFKHLNCFYTLPLDEEWRCHKFENGLRGDICLMVAPLSIKDFATLVEKDKVMEKMKREGEGQRPQQPQQQ*
Ga0099822_10541562	3300006943	Root Nodules	VAEYAERFKHLSRFYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKRGVEGQRPKQPQQP*
Ga0099822_10583561	3300006943	Root Nodules	LTQGGKTVAEYAERLKHLSHFYTLPLDEEWRCRKFENDLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQPQP
Ga0099822_10613431	3300006943	Root Nodules	MAEYAERFKHLEHFYTMPLDEEWRCRKFENGLQRDIRLMVAPLSIKDFAALVERV*
Ga0099822_10650403	3300006943	Root Nodules	VTSYAEKFKHLNRFYTLPLDEEWRCRKLENGLREDIRLMVAPLSIKDFAAPEEKSRVMEKMKNEVEGQRPQQPQRI
Ga0099822_10773783	3300006943	Root Nodules	FKHLSRFYTLPLDEEYRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVIEKMKREVEGQRP*
Ga0099822_10914351	3300006943	Root Nodules	VAKYAEKFKHLKRFYTLQLDKEWRCRKFENGVRCDIRLMVAPLSIKDFAALVEKTRAMEKMKHEVVGQRPQQP*
Ga0099823_10233241	3300006944	Root Nodules	VAEYAERFKHLSRFYTLPLDEEWRCRKFENGLYGDICLMVAPLSVKDFAALVEKVRVMEKMKREVEG*
Ga0099823_10471574	3300006944	Root Nodules	VTEYAEKFKHFSCFYTLPLDEEWRCRKFENGLRGDICLMVAPLSIKDFTSLVEKARVMEKMKREVEGQRPQ*
Ga0099823_10607814	3300006944	Root Nodules	VTEYAERFKHLNCFYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKHEVE
Ga0099823_11094111	3300006944	Root Nodules	GKTVTDYAEKFKHLSRFYTLPLDEEWRCQKFENGLRGDIRLMVAPLSIKDFAALVEKAWVMEKMKNEVEGQRP*
Ga0214544_100033239	3300021320	Root Nodules	VAEYAERFKHLIRFYTLPLNEELRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQPQ
Ga0214544_100117817	3300021320	Root Nodules	VTEYAERFKHLSRFYTLPLDEERRCRKFENGLRGDIRLMVVPLSIKDFATLVEKARVMEKMKREVEGQRPQQPQQSQRVRGPSR
Ga0214544_10012136	3300021320	Root Nodules	MTKYAEKFKHLNCFYTLPFNEEWRCRKFENGLRGDIRLMMAPLSIKDFVALVEKARVMEKMKREVEGQRPQQP
Ga0214544_100159565	3300021320	Root Nodules	VTEYAEKFKHLICFYTMPLDKEWRCRKFENGLRGDLRLLVAPLSIKDFAALVEKARVMEKMKVEVETQHPHQ
Ga0214544_10018343	3300021320	Root Nodules	VADYTEKFKHLNRFYTLSLDEEWRCWKFENALSGDIRLMVAPLSIKDFAALVEKARVNGEDEE
Ga0214544_100303623	3300021320	Root Nodules	MAEYAEKFKHVSRFYTMPLDEEXRCRKFENGLKGDICLMVAPLSIKDFAALVEKVRVMEKMKVKVETQNPQQ
Ga0214544_100319826	3300021320	Root Nodules	VVEYVERFKHLSHFYTLPLDEEWRCCKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQP
Ga0214544_10032804	3300021320	Root Nodules	VTESAKRFKHLSRFYTLPLDEEWQCRKFKNCLCGDIRLMVAPLFIKDFAALVEKARVMEKMKREVEGQHL
Ga0214544_100363015	3300021320	Root Nodules	VTEYVEKFKHLGCFYTLPLDEEWRCRKFENGLRGDICLMVALLSIKDFAALVEKAKVMEKMKNEVEGQRPQH
Ga0214544_100541913	3300021320	Root Nodules	VSEYVERFKHLSHFYTLPLDEEWRCRKFENGLCGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRRQQPQPPQRIG
Ga0214544_100602915	3300021320	Root Nodules	MTKYAEKFKHLSHFYTLPLDEEWRCRKFENDLKGDVWLMVAPLSIKDFATLVKKARMMEKMKNEVEGQRL
Ga0214544_100626216	3300021320	Root Nodules	VAEYAEKFKHLSRFYNMPLDEEWRCRKFENGLKGDIRLMVALLSIKDFATLVEKAKVIEKMKVKVEAQQSRQ
Ga0214544_100637510	3300021320	Root Nodules	VLECAEKFKHLSRFYTLSLDEEWRCRKFENGLRGDIRYMVAPLSIKDFVALVEKARVMEKIKREVEGQRP
Ga0214544_100666816	3300021320	Root Nodules	VTEYAERFKHLSRFYTLPLDEEWRCRKFESGLRGDIRLMVAPLSIKDFAALVEKAMVMEKMKREVESQRPQQP
Ga0214544_100735415	3300021320	Root Nodules	VSEYAEKFKQLGRFHILKMAEDWQCRKFKNGLRGDLKLMVAPLSIKEFPALVEMARVMEKLKAEVEAQ
Ga0214544_10076562	3300021320	Root Nodules	VANYAEKFKHLTRFYTLPLDEEWRCRKFKNGLRDNIRLMVAPLSIKDFAALVEKARVMEKMKNEVEGQRLQQPQKIGGPSGSS
Ga0214544_100774516	3300021320	Root Nodules	VAKYVERFKHLNRFYTLPLNEEWRCRKFENGLRDDMRLMVAPLSIKDFVALVEKARVMEKMKHEVEGHQPQQP
Ga0214544_100799411	3300021320	Root Nodules	VIEYAEKFKHLSRFYTLPFDDKWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKAKVIEKMKREVEGLRP
Ga0214544_10083226	3300021320	Root Nodules	VAEYAEKFKHLSRFYTMPLDEEWRCRKFKNGLRGDLRLMVALLSIKDFAALVEKARVMEKMKVEVETQHLHQ
Ga0214544_100840213	3300021320	Root Nodules	MAYYAEKFKHLSRFYTLPLDEKWRCRKFENGLRGDIHLMVAPLSIKDFAALVEKARVMEKMKNQVEG
Ga0214544_100840229	3300021320	Root Nodules	VEFLQVTQGGKSVIEYAEKFKHLGRFYTLPLDEEWRCHKFENDLRGDICLMVAPLSTKDFAALAEKARVMKKMKNEVEGQRSQQ
Ga0214544_100884615	3300021320	Root Nodules	VAEYAERFKHLSRFYTLPLDEEWRCHKFENGLCGDVLLMVALMSIKDFPALMEKARVMEKMKHEVEGQRPQQSQ
Ga0214544_10089036	3300021320	Root Nodules	MLVALYVERFKHLGRFYTIPLDEEWQCKKFENDLCVDIRLMVAPLSIKDFAALVEKGKVMEKMKVEVEAQCPEQ
Ga0214544_10141805	3300021320	Root Nodules	VTEYAERFKHLNCFYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKHEVEGQRPQQP
Ga0214544_10142639	3300021320	Root Nodules	VTDYAEKFKHLSRFYTLPLDEEWSCWKFENGLRGDIRLMVAPISIQDFAALVEKAKVMEKMKNEVEG
Ga0214544_10154542	3300021320	Root Nodules	VTEYAEKFKHFSCFYTLPLDEEWRCRKFENGLRGDICLMVAPLSIKDFTSLVEKARVMEKMKREVEGQRPQ
Ga0214544_10159173	3300021320	Root Nodules	VADYAERFKHLSRCYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKAQVMEKMKNEVEGQRPQ
Ga0214544_10159383	3300021320	Root Nodules	VTEYAEKFKYFNHFYTLPLNEEWRCQKFENGLWGDIHLMVAPLSIMDFATLVEKAKVMEKMKHISCYVIMTG
Ga0214544_10167075	3300021320	Root Nodules	VAEYAKKFKHLSRFYTMPLDKEWRCRKFENDLRVDLRLMVAPLSIKDFVALVEKARVMKKMKVEVETQHPHQ
Ga0214544_101742011	3300021320	Root Nodules	VAEYAEKFKHLSRFYTMPLDKEWRCRKFENGLRGDLCLIVAPLSIKDFTALVEKAKVMEKMKVEVETQHPHQ
Ga0214544_10195084	3300021320	Root Nodules	VTKYAERFKHLSRFYNLPLDEEWRCRKFENGLRDDIRLTLAPLSIKDFAALVEKARVMEKMKREVEGQRPQ
Ga0214544_10206633	3300021320	Root Nodules	VTEYAERFKHLSRFYTLPLDKEWRCRKFKNGLRGDIRLMVALLSIKDFATLVEKAKVMGKMKREVEGQRPQQPQPP
Ga0214544_10229746	3300021320	Root Nodules	VTEYVERFKHLNRFYTLPLDEEWRCRKFENGVRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQP
Ga0214544_10272593	3300021320	Root Nodules	MAEYAERFKHLEHFYTMPLDEEWRCRKFENGLQRDIRLMVAPLSIKDFAALVERV
Ga0214544_10295334	3300021320	Root Nodules	VAEYAERFKHLSHFYTLPLDEEWRCHKFENGLRGDIRLMVAPLSIKDFAALVKKARVMEK
Ga0214544_10344581	3300021320	Root Nodules	VTSYAEKFKHLNRFYTLSLDEEWRCRKFENGLREDIRLMVAPLSIKDFAAPEEKSRVMEKMKNEVEGQRP
Ga0214544_10413264	3300021320	Root Nodules	KFKHLSRFYTLPLDEEYRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVIEKMKREVEGQRP
Ga0214544_10439091	3300021320	Root Nodules	KSLTEYAKKFKHLNCFYTLPLDEEWRCHKFENGLRGDICLMVAPLSIKDFATLVEKDKVMEKMKREGEGQRPQQPQQQ
Ga0214542_10020268	3300021321	Root Nodules	VTEYAERYKHLSRFYTLPLDEEWRCRKFENGLCGDIRLIVAPLCIKDFATLVEKTRVMEKMKREVEGQRPQQPQQP
Ga0214542_10362351	3300021321	Root Nodules	LTQGGKSLTEYAKKFKHLNCFYTLPLDEEWRCHKFENGLRGDICLMVAPLSIKDFATLVEKDKVMEKMKREGEGQRPQQPQQQ
Ga0214542_10430682	3300021321	Root Nodules	LTQGGKTVAEYAERLKHLSHFYTLPLDEEWRCRKFENDLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQR
Ga0214542_10558122	3300021321	Root Nodules	VAKYAEKFKHLKRFYTLQLDKEWRCRKFENGVRCDIRLMVAPLSIKDFAALVEKTRAMEKMKHEVVGQRPQQP
Ga0214542_10569732	3300021321	Root Nodules	EYAERFKHLSRFYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQPQPPQRIGGPSGSRPRHEE
Ga0214542_10592482	3300021321	Root Nodules	VTSYAEKFKHLNRFYTLPLDEEWRCRKLENGLREDIRLMVAPLSIKDFAAPEEKSRVMEKMKNEVEGQRP
Ga0214545_10025085	3300021324	Root Nodules	VKFLQLTEGGKSEAEYTEWFKHLSRFYTMPLDEEWRCRKFENDLRGDIHLMEALLSIKDFAVLVEKARVMKKMKIEVEAQRPQQ
Ga0214545_10172649	3300021324	Root Nodules	VAEYAERFKHLSRFYTLPLDEEWRCRKFENGLYGDICLMVAPLSVKDFAALVEKVRVMEKMKREVEG
Ga0214545_10202641	3300021324	Root Nodules	VFSFSLFFLRSYIKHLGRFFTMTLDEEWXFRKFENDLRGDIFLMVASLSIKDFAALVEKARVMERMKVEVEAQHPQQ
Ga0214545_10391062	3300021324	Root Nodules	LTQGGKTVAEYAERLKHLSHFYTLPLDEEWRCRKFENDLRGDIRLMVAPLSIKDFAALVEKARVMEKMKREVEGQRPQQPQ
Ga0214543_10212421	3300021327	Root Nodules	TVTEYAERFKHLSRFYTLPLDEEWRCRKFKNGLRGDIRLMVAPLSIKDFAALVEKVRVMEKMKC
Ga0209389_10065625	3300027296	Root Nodules	VAEYAERFKHLGCFYIMPLAKECQCKKFENGLHGDIRFMVIPLSIKDFAALVERTRVMKRMKAEVEAQQSHHQ
Ga0209389_10167786	3300027296	Root Nodules	VAEYAERFKHLGRFYTMPLDEEWRCKNFENGLRGDIRLMVAPLSIKDFTALVERARVMEQMKAEVEAQQSQQ
Ga0209389_10438391	3300027296	Root Nodules	ERFKHLSRFYTLPLDEEWRCRKFKNGLRGDIRLMVAPLSIKDFAALVEKVRVMEKMKC
Ga0209389_10511531	3300027296	Root Nodules	GNKSVAEYAERFKHLGRFYTMPLDEEWRCRKFENGLKGDIHLMVAPLSIKDFAALVENARVME
Ga0209389_10690311	3300027296	Root Nodules	VAEYAERFKHLSRFYTLPLDEEWRCRKFENGLRGDIRLMVAPLSIKDFAALVEKARVMEKMKRGVEGQRPKQPQQP
Ga0209389_11147451	3300027296	Root Nodules	DKSVAEYAERFKHLGRFYTMSLDEEWLCRKFENGLRGDIRLMVVALSIKDFAALVEKATVMERMKVEVEAQQQPQ

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102641

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006943	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW	Host-Associated	Open in IMG/M
3300006944	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW	Host-Associated	Open in IMG/M
3300021320	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3	Host-Associated	Open in IMG/M
3300021321	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1	Host-Associated	Open in IMG/M
3300021324	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4	Host-Associated	Open in IMG/M
3300021327	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2	Host-Associated	Open in IMG/M
3300027296	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)	Host-Associated	Open in IMG/M

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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