Metagenome / Metatranscriptome Family F102644

Basic Information
Family ID	F102644
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	46 residues
Representative Sequence	VGRPRCESGESEPGTREVRVHAVRLGGRHRLDASRVFSTGRSQGLLV
Number of Associated Samples	81
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.89 %
% of genes near scaffold ends (potentially truncated)	8.91 %
% of genes from short scaffolds (< 2000 bps)	8.91 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (22.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (38.614 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 36.00% Coil/Unstructured: 64.00%
Feature Viewer

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Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007219\|Ga0075025_1335237	Not Available	537	Open in IMG/M
3300011120\|Ga0150983_15101512	Not Available	798	Open in IMG/M
3300012399\|Ga0134061_1007418	Not Available	804	Open in IMG/M
3300012469\|Ga0150984_120856306	Not Available	787	Open in IMG/M
3300020082\|Ga0206353_10818306	Not Available	825	Open in IMG/M
3300021257\|Ga0210329_142972	Not Available	1696	Open in IMG/M
3300031123\|Ga0308195_1002586	Not Available	1694	Open in IMG/M
3300034663\|Ga0314784_004709	Not Available	1685	Open in IMG/M
3300034664\|Ga0314786_005184	Not Available	1674	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.04%
Host-Associated	Host-Associated	3.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.35%
Aquatic	Environmental → Aquatic	30.69%
Plants	Host-Associated → Plants	2.97%
Human	Host-Associated → Human	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.35%
Freshwater	Environmental → Aquatic → Freshwater	29.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Marine	Environmental → Aquatic → Marine	0.99%
Digestive System	Host-Associated → Human → Digestive System	0.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.38%
Sediment	Environmental → Aquatic → Freshwater → Sediment	22.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	4.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.98%
River	Environmental → Aquatic → Freshwater → River	0.99%
Creek	Environmental → Aquatic → Freshwater → Creek	0.99%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.99%
Loam	Environmental → Terrestrial → Soil → Loam	0.99%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.62%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	22.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	16.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.94%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.95%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.99%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	16.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	16.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	13.86%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	5.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	5.94%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.98%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.98%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.99%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.99%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.99%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300006933	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A100I (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300006939	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007219	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010108	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010111	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010116	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010119	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010125	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010126	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010905	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011282	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2012 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012407	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019232	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019241	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019265	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020064	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020066	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021257	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.272 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021947	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022501	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023708	Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024532	Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030812	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031677	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034448	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034479	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034480	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034668	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034670	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034674	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034675	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034677	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058859_115997241	3300004798	Host-Associated	MLHGALDSVGRPRCESGESELGTHEVRVHVIRMGGRHRLDASRVFFT
Ga0081247_12036022	3300006933	Tropical Rainforest Soil	DSVGRPRGESCESEPGTREVRVHMIRLGGRNRSDASRVFSTGRLQGLLVSKRGR*
Ga0081244_10248771	3300006939	Tropical Rainforest Soil	MGHPRCESGESESGTHEVRVHAVRLGGRDRLDALSVF
Ga0075025_10491732	3300007219	Watersheds	VGRPRSESCDSELGTHEVRVHVVRLGGRHRLDALRVFSTGRSQGLLVNQRG
Ga0075025_13352371	3300007219	Watersheds	MGHPRCESGESESGTHEVRVHAVRLGGRNRLDALRVFSTGRSQGLLVIREGAS
Ga0127474_10559001	3300010108	Grasslands Soil	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALSVFSTGRSQGLLVKKREGS
Ga0126316_10379111	3300010110	Soil	MGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTG
Ga0127491_10071841	3300010111	Grasslands Soil	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALSV
Ga0127466_10146091	3300010116	Grasslands Soil	VGRPRRESGEREPGTHEVWVHAVRLGGRYRSDASRVFHAGSSQGLVVARRALARKKFA
Ga0127452_11589601	3300010119	Grasslands Soil	VGHPRCESGESESGTHEVRVHAVRLGGRYRLDALRVF
Ga0127443_11395061	3300010125	Grasslands Soil	MRHPRCESGVSESGTHEVWVNAVRLGGRYRLDALRVFSTGRSQGLL
Ga0127482_10202831	3300010126	Grasslands Soil	VGHPRCESGESEPGTHEVRVHAVRLGGRYRLDALRVFSTGRSQG
Ga0127482_11292942	3300010126	Grasslands Soil	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALRVFSTGRSQGLLVKK
Ga0127486_11517961	3300010128	Grasslands Soil	VGRPRSESCESEPGTREVRVHTVRLGGRHRLDASRVFSTGRSQGLLVIREGASQ
Ga0127503_104198251	3300010154	Soil	VGRPRSESCESESGTRKVRVHAVRLGGRHRLDASRVFSTGRSQGLLVIREGAS
Ga0127503_104208333	3300010154	Soil	VGRPRSESCVSEPGTREVRVHAVRLGGRHRLDASRVFSTGRSQGLLVIREGAS
Ga0138112_10798011	3300010905	Grasslands Soil	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALRVFSTGRSQGLLV
Ga0150983_151015122	3300011120	Forest Soil	VGRPRSESCESEPGTHEVRVHTVRMGGRHRLDASRVFSTGRPQGLLVKREGASRE
Ga0138293_1428172	3300011282	Watersheds	VGRPRSESCVSEPGTREVRVHVVRLGGSHRLDALRVFSAGRSQGLLVRE
Ga0127502_108075081	3300011333	Soil	VVCPRRESGESEPGAREVRVHASRLGGRHRLDASRVFSTGRS
Ga0127502_108855422	3300011333	Soil	VGCPRCESGVSELGTCEVRVHAVRLGGRHRLDASRVFSTGRSQGLLV
Ga0150985_1094030713	3300012212	Avena Fatua Rhizosphere	MPGGALVSVGRPRSESCEREPGTREVRVHTVRLGGRYRSDASRVFSTGRSQGLLV
Ga0134047_11638822	3300012380	Grasslands Soil	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALRVFS
Ga0134043_11484381	3300012392	Grasslands Soil	VGHPRCESGESEPGTHEVRVHAVRLGGRYRLDALRVFSTGRSQGLLV
Ga0134061_10074182	3300012399	Grasslands Soil	VGRPRRESGEREPGTHEVWVHAVRLGGRNRLDASRVFHAGRSQGLLVSKGASQ
Ga0134061_10329452	3300012399	Grasslands Soil	MSHPRCESGESESGTHEVRVHAVRLGGRYRLDALRVFSTGRSQGLLVIKE
Ga0134050_10092481	3300012407	Grasslands Soil	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALRVFSTGRS
Ga0150984_1016143533	3300012469	Avena Fatua Rhizosphere	MPGGALVSVGRPRSESCEREPGTREVRVHTVRLGGRYRSDASRVFSTGRSQ
Ga0150984_1208563062	3300012469	Avena Fatua Rhizosphere	VGRPRRESGESEPGTREVRVHAVRLGGRHRLDASRVFSTGRSQGLLMIREGASQ
Ga0180119_13867041	3300019228	Groundwater Sediment	VGRPRCESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRSQDLLV
Ga0180116_10021211	3300019229	Groundwater Sediment	VGRPRRESGESELGTRKVRVHVVRLGGRHRLDASRVFSA
Ga0180116_12796382	3300019229	Groundwater Sediment	VGCLCRESGESELGTREVRVHVVRMGGRHRSVASRVFS
Ga0180114_11693201	3300019232	Groundwater Sediment	VGRPRCESGESEPGTREVRVHAVRLGGRHRLDASRVFSTGRSQGLLV
Ga0184645_10534972	3300019233	Groundwater Sediment	VGRPRCESGESESGTHEVRVHAVRLGGRYRLDALSIFSTGRSQGLLVKN
Ga0187793_14488861	3300019241	Peatland	VSVGHPRRESGEREPGTREVRVHTIRLGGRHRLDASRVFSAGRSQGLLAIREG
Ga0180111_11528031	3300019244	Groundwater Sediment	VGNPRSESCESEPGTREVRVHVVRMGGRSWFDASRVFFTGRSQGRT
Ga0184643_14769431	3300019255	Groundwater Sediment	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALRVFSTGRSQGL
Ga0180115_12297581	3300019257	Groundwater Sediment	MPGEALVFVGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVF
Ga0184646_12477611	3300019259	Groundwater Sediment	VGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGRS
Ga0187792_16586571	3300019265	Peatland	CESGESESGTHEVRVHAVRLGGRDRLDALSVFFTGRLQGLLVRRGR
Ga0184642_15036441	3300019279	Groundwater Sediment	VGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGRSQGLLVTREGASQ
Ga0180118_11505541	3300020063	Groundwater Sediment	VGRPRSESCESEPGTHEVRVHVVRLGGRNRLDASRVF
Ga0180107_10914061	3300020064	Groundwater Sediment	VGRPRCESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRSQGLLVT
Ga0180107_11821921	3300020064	Groundwater Sediment	VGRPRCESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRSQDLL
Ga0180108_11603922	3300020066	Groundwater Sediment	VGRPRYESGESEPGTHEVRVHAVRLGGRHRLDASRVFSTGRSQGLLV
Ga0180108_12592291	3300020066	Groundwater Sediment	VGNPRSESCESEPGTREVRVHVVRMGGRHRLDASRVFSTGRSQDLLV
Ga0180109_12903422	3300020067	Groundwater Sediment	MGCPRRESGESEPGTSEVRVHVDRLGGRSRFDASRVFFTGRS
Ga0197907_101190312	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VGHPRRESGESEPGTREVRVHTIRLGGRHRLDASRVFSAGRS
Ga0206356_113776671	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGRSQGLLV
Ga0206351_106220982	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	VGHPRRESGESEPGTREVRVHTIRLGGRHRLDASR
Ga0206354_102488751	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MPYGALDSVGRPRRESGEREPGTHAVRVHAVRLGGRNRSDASRVFH
Ga0206353_108183062	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	NTRSPGQPDGALDSVGRPRGESCESEPGTREVRVHTIRLGGRNRSDASRVFSTGRLQGLLVTTRGR
Ga0206353_109474781	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MPRGAKDSVGCPRSESCESEPGTHEVRVHVVRLGGRYRSDASRVFSTGRSQ
Ga0210329_1429721	3300021257	Estuarine	VGHPRCESGESEPGTHEVRVHAVRLGGRNRLDALRVFSTGRLQGLL
Ga0179585_10155671	3300021307	Vadose Zone Soil	VGRPRSESCESESGTRKVRVHAVRLGGRHRLDASRVFSTGRSQGLLV
Ga0213856_10775202	3300021947	Watersheds	VGRPRGESRESEPGTREVRVHAVRLGGRNRLDASRVFSAGRSQGLLV
Ga0213856_11097753	3300021947	Watersheds	VGRPRSESCESEPGTREVRVHVVRLGGRHRLDASRVFSTGRS
Ga0213856_12944901	3300021947	Watersheds	VGRPRCESGESELGTHEVRVHVVRLGGRNRLDASRVFST
Ga0222625_10067921	3300022195	Groundwater Sediment	MGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGR
Ga0242645_10046462	3300022501	Soil	VGRPRSESCESEPGTHEVRVHTVRMGGRHRLDASRVFSTGRPQGLLVKR
Ga0228709_11020201	3300023708	Freshwater	MPCGALVSVGPPRSESCEREPGTHEVRVHVVRLGGRHRLDASRVFSTG
Ga0256352_10858511	3300024532	Freshwater	VGRPRGESREREPGTREVRVHAVRLGGRHRLDASRVFSTGRSQGLL
Ga0265734_1003521	3300030812	Soil	VGRPRSESCEREPGTHEVRVHTVRLGGRHRLDASRVFSTGR
Ga0308152_1049391	3300030831	Soil	VRRPRCESGESETGTHEVRVHVVRLGGRHRLDASRVFSTGRSQGLLVKR
Ga0308152_1154021	3300030831	Soil	VGRPRSESCESEPGTRKVRVHAVRLGGRNRLDASRVFSTGRSQGLLV
Ga0308198_10951531	3300030904	Soil	VGRPRCESGESEPGTHEVRVHAVRLGGRSRLDTSRVFFAGRSQDLSVLE
Ga0075394_110422481	3300030969	Soil	VRNPRCESGARSREHDEVRVHAVRLGGRYRLDASRVFSAVASQDAVT
Ga0308155_10008072	3300030987	Soil	VGRPRSESCESEPGTREVRVHAVRLGGRNRLDASRVFSTGRSQGLLV
Ga0308155_10118982	3300030987	Soil	VGRPRSESCESEPGTREVRVHAVRLGGRNRLDASRAFSTGRSQDLLVK
Ga0308183_10060853	3300030988	Soil	VGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGRSQGLLVTR
Ga0308196_10205071	3300030989	Soil	VPRGAQDSVGTPRHESGEREPGTREVRVHVDRMGGRRRLDAS
Ga0170834_1065017012	3300031057	Forest Soil	VGRPRSESCEREPGTREVRVHTVRLGGRHRLDASRVFSTGRPQGLLV
Ga0308192_10338802	3300031082	Soil	VGRPRCESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRSQGLLV
Ga0308201_101328551	3300031091	Soil	VGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRV
Ga0308184_10160971	3300031095	Soil	VGRPRCESGESEPGTHEVRVHVVRLGGRHRLDASRVFST
Ga0308184_10259551	3300031095	Soil	MRHPRCESGVSESGTHEVRVHAVRLGGRYRLDALSVFSTGRSQGLLVKK
Ga0308184_10545711	3300031095	Soil	VGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGRSQGLLVTREGAS
Ga0308195_10025862	3300031123	Soil	MRHPRCESGESELGTHEVRVHAVRLSGRYRLDALRVFSTR
Ga0170824_1248904981	3300031231	Forest Soil	VGRPRSESCEREPGTREVRVHTVRLGGRHRLDASRVFSTGRPQGLLVN
Ga0307480_10071462	3300031677	Hardwood Forest Soil	VPRGAEDSVGTPRRESGESEPGTREVRVHADRLGGRRRLDASRVFST
Ga0307480_10182551	3300031677	Hardwood Forest Soil	MPGGALVSVGRPRSESCEREPGTREVRVHTVRLGGRHRLDASRVFSTGRSQGLLVNR
Ga0370540_08107_473_631	3300034448	Soil	MGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGRSQGLLVTREGAS
Ga0314785_005625_711_824	3300034479	Soil	MGTPRRESGESEPGTREVRVHAGRLGGRRRLNASRVFS
Ga0314789_002445_2_112	3300034480	Soil	MGRPRCESGASEPGTDEVRVHAVRLGGRRRLDTSRVF
Ga0314789_023939_454_567	3300034480	Soil	MGRPRCESGEREPGTHEVRVHAVRLGGRHRLDASRVFS
Ga0314780_084024_558_698	3300034659	Soil	MGRPRYESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRSQDLLV
Ga0314784_004709_1519_1683	3300034663	Soil	MGCPRCESGESEPGTNEVRVHAVRMGGRNRLDASRVFSTGRSQGLLVNREGASRE
Ga0314786_005184_1533_1673	3300034664	Soil	MGRPRSESCESEPGTREVRVHVVRLGGRHRLDASRVFSTGRSQDLLV
Ga0314788_008665_1306_1455	3300034666	Soil	MGRPRCESGESEPGTREVRVHAGRLGGRHRFDASRVFSAKGSQGLLVTRG
Ga0314788_125135_487_603	3300034666	Soil	MGRPRYESGESEPGTHEVRVHVVRLGGRHRLDASRVFST
Ga0314793_004978_1547_1663	3300034668	Soil	MGRPRSESCESEPGTREVRVHVVRLGGRHRLDASRVFST
Ga0314795_036498_2_160	3300034670	Soil	MGCPRRESGESEPGTREVRVHASRLGGRHRSDASRVFSTGRSQGLLVTREGTS
Ga0314796_152538_2_127	3300034671	Soil	MGRPRCESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRS
Ga0314797_121701_2_133	3300034672	Soil	MLHGAQDSVGCPRRESGESELRTREVRVHVVRMGGRYRSVASRA
Ga0314799_021456_2_127	3300034674	Soil	MRRPRRESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRS
Ga0314800_000834_1587_1739	3300034675	Soil	MPYGALDSVGRPRCESGESELGTHEVRVHAVRLDGRYRLDALSVFLAGRS
Ga0314800_047984_459_599	3300034675	Soil	MGRPRYESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRSQGLLV
Ga0314801_072041_1_114	3300034676	Soil	MPYGAKDSVGRPRCESGESEPGTHEVRVHAVRLGGTHR
Ga0314802_017407_546_704	3300034677	Soil	MGCPRCESGVSESGTREVQVHAVRLGGRHRLDTSRVFSTGRSQDLLVNERALA
Ga0370541_000710_515_673	3300034680	Soil	MGRPRSESCESELGTRKVRVHVVRLGGRHRLDASRVFSTGRSQGLLVTKRGR
Ga0370546_097000_375_506	3300034681	Soil	MGRPRCESGESEPGTHEVRVHVVRLGGRHRLDASRVFSTGRSQG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102644

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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