Metagenome / Metatranscriptome Family F102753

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102753
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	65 residues
Representative Sequence	PLVNLRFTTSFPKLVEGILGLSEEVELVNRSDFYDERYPFGTRVPAVATSAFTIVGTGSGPGL
Number of Associated Samples	92
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.98 %
% of genes near scaffold ends (potentially truncated)	97.03 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.129 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.752 % of family members)
Environment Ontology (ENVO)	Unclassified (27.723 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.614 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.40% β-sheet: 6.59% Coil/Unstructured: 89.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03840	SecG	8.91
PF02597	ThiS	7.92
PF02012	BNR	3.96
PF00072	Response_reg	2.97
PF15899	BNR_6	1.98
PF05721	PhyH	0.99
PF09339	HTH_IclR	0.99
PF00534	Glycos_transf_1	0.99
PF01523	PmbA_TldD	0.99
PF08281	Sigma70_r4_2	0.99
PF13439	Glyco_transf_4	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1314	Protein translocase subunit SecG	Intracellular trafficking, secretion, and vesicular transport [U]	8.91
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	7.92
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	7.92
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.99
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.13 %
Unclassified	root	N/A	12.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.13 %
Unclassified	root	N/A	12.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.13 %
Unclassified	root	N/A	12.87 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	63.37 %
Unclassified	root	N/A	12.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.37 %
Unclassified	root	N/A	12.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	30.69 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	20.79 %
Unclassified	root	N/A	12.87 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.69 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	19.80 %
Unclassified	root	N/A	12.87 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.69 %
Unclassified	root	N/A	12.87 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.69 %
Unclassified	root	N/A	12.87 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.69 %
Unclassified	root	N/A	12.87 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	1.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.69 %
Unclassified	root	N/A	12.87 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.99 %
Solirubrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig66616	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300000891\|JGI10214J12806_10950288	Not Available	823	Open in IMG/M
3300000956\|JGI10216J12902_112671362	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300002407\|C687J29651_10181220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	679	Open in IMG/M
3300002568\|C688J35102_117905737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	514	Open in IMG/M
3300003987\|Ga0055471_10149354	Not Available	712	Open in IMG/M
3300004081\|Ga0063454_102022363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	510	Open in IMG/M
3300004114\|Ga0062593_103212842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	524	Open in IMG/M
3300004463\|Ga0063356_100514643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	1588	Open in IMG/M
3300004463\|Ga0063356_105539121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	542	Open in IMG/M
3300004479\|Ga0062595_102589953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300004480\|Ga0062592_100251763	Not Available	1296	Open in IMG/M
3300004643\|Ga0062591_102991854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	502	Open in IMG/M
3300004801\|Ga0058860_12111286	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300005329\|Ga0070683_101761239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	596	Open in IMG/M
3300005353\|Ga0070669_101886499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300005355\|Ga0070671_100949875	Not Available	752	Open in IMG/M
3300005549\|Ga0070704_101552934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300005563\|Ga0068855_101765571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300005564\|Ga0070664_101496159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300006846\|Ga0075430_100198280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1667	Open in IMG/M
3300006876\|Ga0079217_11120320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	590	Open in IMG/M
3300006881\|Ga0068865_100390893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1137	Open in IMG/M
3300006918\|Ga0079216_10351207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	900	Open in IMG/M
3300009094\|Ga0111539_10738547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1146	Open in IMG/M
3300009162\|Ga0075423_12725916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300009176\|Ga0105242_11170095	Not Available	787	Open in IMG/M
3300009811\|Ga0105084_1120008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300009818\|Ga0105072_1125303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300009819\|Ga0105087_1011433	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300010041\|Ga0126312_10921261	Not Available	637	Open in IMG/M
3300010044\|Ga0126310_11477681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300010145\|Ga0126321_1002981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300010147\|Ga0126319_1441622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300010375\|Ga0105239_12897560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300010399\|Ga0134127_10501445	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300011119\|Ga0105246_10817012	Not Available	828	Open in IMG/M
3300012900\|Ga0157292_10128860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300012908\|Ga0157286_10014026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1633	Open in IMG/M
3300013308\|Ga0157375_10477283	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300014259\|Ga0075311_1155690	Not Available	526	Open in IMG/M
3300014314\|Ga0075316_1032065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1080	Open in IMG/M
3300014320\|Ga0075342_1172790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300014325\|Ga0163163_10184852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2132	Open in IMG/M
3300014487\|Ga0182000_10316859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	657	Open in IMG/M
3300014965\|Ga0120193_10050562	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300015201\|Ga0173478_10647865	Not Available	556	Open in IMG/M
3300018027\|Ga0184605_10005774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4485	Open in IMG/M
3300018061\|Ga0184619_10037881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2061	Open in IMG/M
3300018071\|Ga0184618_10016662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2335	Open in IMG/M
3300018072\|Ga0184635_10058682	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300018076\|Ga0184609_10426337	Not Available	613	Open in IMG/M
3300018082\|Ga0184639_10502950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300018432\|Ga0190275_11106557	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300018433\|Ga0066667_10319972	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300018466\|Ga0190268_10096700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1358	Open in IMG/M
3300019361\|Ga0173482_10450251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	612	Open in IMG/M
3300019362\|Ga0173479_10079056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1164	Open in IMG/M
3300019767\|Ga0190267_10086170	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300021078\|Ga0210381_10019177	All Organisms → cellular organisms → Bacteria	1795	Open in IMG/M
3300022195\|Ga0222625_1569010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	741	Open in IMG/M
3300022756\|Ga0222622_10061989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2163	Open in IMG/M
3300025322\|Ga0209641_10106195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2146	Open in IMG/M
3300025325\|Ga0209341_10838591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300025325\|Ga0209341_11027429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300025326\|Ga0209342_10121110	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300025919\|Ga0207657_11138109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300025933\|Ga0207706_11720891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300025945\|Ga0207679_10290315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	1406	Open in IMG/M
3300026121\|Ga0207683_12004891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300027650\|Ga0256866_1113564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	732	Open in IMG/M
3300027650\|Ga0256866_1209305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	526	Open in IMG/M
3300028592\|Ga0247822_10578641	Not Available	897	Open in IMG/M
3300028708\|Ga0307295_10027276	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300028711\|Ga0307293_10000363	All Organisms → cellular organisms → Bacteria	11392	Open in IMG/M
3300028778\|Ga0307288_10265889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	675	Open in IMG/M
3300028787\|Ga0307323_10014274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2674	Open in IMG/M
3300028793\|Ga0307299_10037462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1773	Open in IMG/M
3300028796\|Ga0307287_10028207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1993	Open in IMG/M
3300028875\|Ga0307289_10408044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300028881\|Ga0307277_10046923	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300028881\|Ga0307277_10075109	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300028881\|Ga0307277_10188619	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300030006\|Ga0299907_10934173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	642	Open in IMG/M
3300030006\|Ga0299907_11341242	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031114\|Ga0308187_10117884	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031114\|Ga0308187_10162959	Not Available	753	Open in IMG/M
3300031114\|Ga0308187_10387781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300031228\|Ga0299914_10778004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	800	Open in IMG/M
3300031847\|Ga0310907_10470866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	667	Open in IMG/M
3300031858\|Ga0310892_10176556	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300031901\|Ga0307406_10104502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1936	Open in IMG/M
3300031949\|Ga0214473_12219765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300031995\|Ga0307409_100014714	All Organisms → cellular organisms → Bacteria	5103	Open in IMG/M
3300031995\|Ga0307409_102792150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300032004\|Ga0307414_11937507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300032122\|Ga0310895_10413985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	663	Open in IMG/M
3300033417\|Ga0214471_10500432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	972	Open in IMG/M
3300033550\|Ga0247829_10955182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	713	Open in IMG/M
3300034151\|Ga0364935_0092210	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300034678\|Ga0314803_047804	Not Available	732	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.24%
Host-Associated	Host-Associated	23.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.36%
Plants	Host-Associated → Plants	22.77%
Aquatic	Environmental → Aquatic	11.88%
Human	Host-Associated → Human	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.83%
Sediment	Environmental → Aquatic → Sediment	6.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.95%
Freshwater	Environmental → Aquatic → Freshwater	3.96%
Marine	Environmental → Aquatic → Marine	0.99%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%
Digestive System	Host-Associated → Human → Digestive System	0.99%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.89%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.97%
Sand	Environmental → Terrestrial → Soil → Sand	2.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.98%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.99%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.94%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	4.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.97%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.98%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002407	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034678	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_09761280	2124908045	Soil	VTKPLVNLRFTTSFPKLAETILGLGNDVELVNRSDFYDQRYPFGTLVPTVATEAFTIVGTGSGPGL
JGI10214J12806_109502882	3300000891	Soil	VTKPLVNLRFTTSFPKLVEGILGLSEEVLLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
JGI10216J12902_1126713622	3300000956	Soil	GTFKIEGGKVTKPLVNLRFTTSFPKLAEGILGLSEEVVLVNRSDFYDERYPFGTRVPAVATSAFTIVGTGSGPGL*
C687J29651_101812201	3300002407	Soil	LRFTTSFPSFAASLLGLSRDVRLVNLSDFYDERLPLGALVPAAASEAFTIVGAGSRPGL*
C688J35102_1179057371	3300002568	Soil	TFKIEGGKVTKPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATNAFTIVGTGSGPGL*
Ga0055471_101493542	3300003987	Natural And Restored Wetlands	FTTSFPRLVEGILGLSEEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0063454_1020223632	3300004081	Soil	IEGGKVTKPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0062593_1032128422	3300004114	Soil	IEGGKVTKPLVNLRFTTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0063356_1005146433	3300004463	Arabidopsis Thaliana Rhizosphere	LVNLRFTTSFPALAAGLLGLTEDVTLVNRSDFYDERYPFGTLVPAVATEAFTIVGTGSGPGL*
Ga0063356_1055391211	3300004463	Arabidopsis Thaliana Rhizosphere	GGKVTKPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0062595_1025899531	3300004479	Soil	TKPLVNLRFTTSFPKLVEGILGLSEEIVLVNRSDFYDERYPFGTRVPAVATNAFTIVSTGSGPGL*
Ga0062592_1002517632	3300004480	Soil	NLRFTTSFPKLVEGILGLSEEVLLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0062591_1029918542	3300004643	Soil	KVTKPLVNLRFTTSFPKLVEGILGLSEEVLLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0058860_121112861	3300004801	Host-Associated	NLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0070683_1017612391	3300005329	Corn Rhizosphere	GGKVTKPLVNLRFTTSFPKLVEGILGLSEEVLLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0070669_1018864991	3300005353	Switchgrass Rhizosphere	KVTKPLVNLRFTTSFPKLVEGILGLSEEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0070671_1009498752	3300005355	Switchgrass Rhizosphere	KPLVNLRFTTSFPKLVDGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0070704_1015529342	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0068855_1017655711	3300005563	Corn Rhizosphere	KPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0070664_1014961591	3300005564	Corn Rhizosphere	LRFTTSFPKLVEGILGLSEEVLLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0075430_1001982804	3300006846	Populus Rhizosphere	TTSFPALAAGLLGLTEDVTLVNRSDFYDERYPFGTLVPAVATEAFTIVGTGSGPGL*
Ga0079217_111203202	3300006876	Agricultural Soil	RITKPLVNLRFTTSFPKLAERLLGLSSDVVLVNRSDFYDERYPFGTLVPAVATSAFTIVGTGSGPGL*
Ga0068865_1003908932	3300006881	Miscanthus Rhizosphere	KVTKPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0079216_103512071	3300006918	Agricultural Soil	RVEGGKVTKPLVNLRFTTSFPALAAGLLGLTEEVTLVNRSDFYDERYAYGTLVPAVATEAFTIVGTGSGPGL*
Ga0111539_107385471	3300009094	Populus Rhizosphere	IEDGKVTKPLVNLRFTTSFPKLVEGILGLSEEVELVNRSDFYDERYPFGTRVPAVATSAFTIVGTGSGPGL*
Ga0075423_127259161	3300009162	Populus Rhizosphere	PLVNLRFTTSFPKLVEGILGLSEEVELVNRSDFYDERYPFGTRVPAVATSAFTIVGTGSGPGL*
Ga0105242_111700951	3300009176	Miscanthus Rhizosphere	VTKPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0105084_11200081	3300009811	Groundwater Sand	TFRIEDGKVTTPVVNLRFTTSFPALAAGLLGLTKDVTLVNRSDFYDERYPFGTLVPAVATDAFTIVGTGSGPGL*
Ga0105072_11253031	3300009818	Groundwater Sand	SFPKLVESLVGLEQDVELVNRSDFYEERYPFGTLVPAVATEAFTIVGTGSGPGL*
Ga0105087_10114332	3300009819	Groundwater Sand	RFTTSFPDLVAGLLGLTEETTLVNASDFYDERYPFGTLVPAAATETFTIVGTGSGPGL*
Ga0126312_109212611	3300010041	Serpentine Soil	TTSFPRLVESLPGLGSKQKLVNQSDFYDERYPYATLVPTVATEAFTIVGTGSGPGL*
Ga0126310_114776811	3300010044	Serpentine Soil	PLVNLRFTTSFPALLEALLGLTKEVRLVNRSDFYDERFPFGTLAPAVATEAFTIIGAGSGPGL*
Ga0126321_10029811	3300010145	Soil	RFTTSFPKLVESLVGLGNDVELVNRSDFYDERYPFGTLVPTVATDSFTIVGTGSGPGL*
Ga0126319_14416221	3300010147	Soil	SFPKLAEGILGLSEEVVLVNRSDFYDERYPYGTRVPAIATGAFTIVGTGSGPGL*
Ga0105239_128975602	3300010375	Corn Rhizosphere	TFKIEGGKVTKPLVNLRFTTSFPKLVEGILGLSEEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0134127_105014451	3300010399	Terrestrial Soil	KVTKPLVNLRFTTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0105246_108170121	3300011119	Miscanthus Rhizosphere	KPLVNLRFTTSFPKLVEGILGLSEEVLLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0157292_101288601	3300012900	Soil	TFKIEGGKVTKPLVNLRFTTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0157286_100140261	3300012908	Soil	IEGGKVTKPLVNLRFTTSFPKLVEGILGLSEEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0157375_104772833	3300013308	Miscanthus Rhizosphere	GKVTKPLVNLRFTTSFPKLVEGILRLSAEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0075311_11556903	3300014259	Natural And Restored Wetlands	FSTSFPELAATLLGLGREVRLVNASDFYDERYPYGTRVPAVATERFTITGTGSGPGL*
Ga0075316_10320652	3300014314	Natural And Restored Wetlands	GKVTKPLVNLRFTTSFPRLVEGILGLAEEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0075342_11727902	3300014320	Natural And Restored Wetlands	VTTPVVNLRFTTSFRSLVDGLLGLTEELTLVNRSDFYDDRYPFGTLVPAVATSAFTVVGTGSGPGL*
Ga0163163_101848521	3300014325	Switchgrass Rhizosphere	GKVTKPLVNLRFTTSFPKLVDGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL*
Ga0182000_103168592	3300014487	Soil	VTKPLVNLRFTTSFPKLVESLVGLGSDVELVNRSDFYDERYPFGTLVPTVATESFTIVGTGSGPGL*
Ga0120193_100505622	3300014965	Terrestrial	LPDSGWVSVWIEGGKVAKPLVNLRFTTSFPKLVENLVGLGNDVELVNRSDFYDERYPFGTLVPHAASEAFTVVGTGSGPGL*
Ga0173478_106478653	3300015201	Soil	FSTSFPELAATLLGLGRDVRLVNSSDFYDERYPYGTRVPAVATERFTITGTGSGPGL*
Ga0184605_100057748	3300018027	Groundwater Sediment	RDGTFRIKGGKVSKPLVNLRFTTSFPKLVESLVGLETSVELVNRSDFYEERYPFGTLVPAVATEAFTIVGTGSGPGL
Ga0184619_100378815	3300018061	Groundwater Sediment	DGTFRIEGGKVSKPLVNLRFTTSFPKLVESLVGLGKDVELVNRSDFYDERYPFGTLVPTMATEAFTIVGTGSGPGL
Ga0184618_100166625	3300018071	Groundwater Sediment	GRVTEPLANLRFTTSFPALAASLLGLGRDVTLVNGSDFYGDRYPFGSLVPAVATEAFTVVGTGSGPGL
Ga0184635_100586823	3300018072	Groundwater Sediment	TPLVNLRFTTSFPRLAESLIGLGNDVELVNRSDFYDERYPFGTLVPTVATEAFTIVGTGSGPGL
Ga0184609_104263372	3300018076	Groundwater Sediment	LVNLRFTTSFPRLVERLLGLSKDVTLVNRDDFYDDRYPFGTLVPAVATEEFTVVGTGSGPGL
Ga0184639_105029501	3300018082	Groundwater Sediment	TFRIRNGKVAEPLVNLRFTTSFPTLVEKLLGLGKEVVLVNRSDFYDERYPFGTLVPHAASEAFTIVGTGSGPGL
Ga0190275_111065571	3300018432	Soil	NLRFTTSFPALAAGLLGLTEGVTLVNRSDFYDERYPFGTLVPAAATEAFTIVGTGSGPGL
Ga0066667_103199721	3300018433	Grasslands Soil	TKPLVNLRFTTSFPKLVEALLGLGNDVELVNRNDFYDERYPFGTLVPTVATGAFTIVGTGSGPGL
Ga0190268_100967003	3300018466	Soil	GGKVTKPLVNLRFTTSFPALAAGLLGLTEEVTLVNRSDFYDERYAYGTLVPAVATEAFTIVGTGSGPGL
Ga0173482_104502511	3300019361	Soil	KPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0173479_100790564	3300019362	Soil	RPLANLRFSTSFPELAATLLGLGRDVRLVNASDFYDERYPYGTRVPAVATERFTITGTGSGPGL
Ga0190267_100861702	3300019767	Soil	TFKIEGGKVTKPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0210381_100191774	3300021078	Groundwater Sediment	GKVTKPLVNLRFTTSFPKLVEDILGLSEEVVLVNRSDFYDERYPFGTRVPAVATNAFTIVSTGSGPGL
Ga0222625_15690101	3300022195	Groundwater Sediment	TFRIEGGRVTEPLANLRFTTSFPALAASLLGLGRDVTLVNGSDFYGDRYPFGSLVPAVATEAFTVVGTGSGPGL
Ga0222622_100619891	3300022756	Groundwater Sediment	EGGRVTEPLANLRFTTSFPALAASLLGLGRDVTLVNGSDFYGDRYPFGSLVPAVATEAFTVVGTGSGPGL
Ga0209641_101061951	3300025322	Soil	QGNVTRPLVNLRFTTSFPAFAASLLGLSRDVRLVNLSDFYDERLPLGALVPAAASEAFTIVGAGSRPGL
Ga0209341_108385912	3300025325	Soil	NLRFTTSFPAFAASLLGLSRDVRLVNLSDFYDERLPLGALVPAAASEAFTIVGAGSRPGL
Ga0209341_110274291	3300025325	Soil	GEITEPLVNLRFTTSFPELARDLLGLTSHVTLVNTADFYDDRYPTGSLVPGVATESFTIIGAGSGPGL
Ga0209342_101211105	3300025326	Soil	LRFTTSFPAFAASLLGLSRDVRLVNLSDFYDERLPLGALVPAAASEAFTIVGAGSRPGL
Ga0207657_111381091	3300025919	Corn Rhizosphere	KVTKPLVNLRFTTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0207706_117208912	3300025933	Corn Rhizosphere	PLANLRFTTSFPKLVEGILGLSKEVELVNRSDFYDERYPFGTRVPAIATSAFTIVSAGSGPGL
Ga0207679_102903153	3300025945	Corn Rhizosphere	FTTSFPKLVEGILGLSEEVLLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0207683_120048911	3300026121	Miscanthus Rhizosphere	GGKVTKPLVNLRFTTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0256866_11135641	3300027650	Soil	RFTPSFPALAAGLLGLTKEVTLVNRSDFYDERYPYGTLVPAVATEAFTIVGTGSGPGL
Ga0256866_12093052	3300027650	Soil	VNLRFTTSFPELAAKLLGLSREVTLVNRSDFYDERYPFGTLVPAVATEAFTIVGSGSGPG
Ga0247822_105786412	3300028592	Soil	NLRFTTSFPKLVEGILGLSEEVELVNRSDFYDERYPFGTRVPAIATSVFTIVSTGSGPGL
Ga0307295_100272764	3300028708	Soil	TSFPALAASLLGLGRDVTLVNGSDFYGDRYPFGSLVPAVATEAFTVVGTGSGPGL
Ga0307293_1000036316	3300028711	Soil	ANLRFTTSFPALASSLLGLGRDVTLVNGSDFYGDRYPFGSLVPAVATEAFTVVGTGSGPG
Ga0307288_102658892	3300028778	Soil	EGGKVTKPLVNLRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0307323_100142745	3300028787	Soil	TFRIEGGRVTEPLANLRFTTSFPALAASLLGLGRDVTLVNGSDFYGERYPFGSLVPAVATEAFTVVGTGSGPGL
Ga0307299_100374621	3300028793	Soil	KPLVNLRFTTSFPKLVEGILGLSDEVELVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0307287_100282075	3300028796	Soil	NLRFTTSFPKLVEGILGLSEEVVLVNRSDFYDERYPFGTRVPAVATSAFTIVTTGSGPGL
Ga0307289_104080441	3300028875	Soil	LVNLRFTTSFPKLVESLVGLEKDVELVNRSDFYEERYPFGTLVPAVATEAFTIVGTGSGPGL
Ga0307277_100469231	3300028881	Soil	DGTFRIEGGKVSKPLVNLRFTTSFPKLVESLVGLGKDVELVNRSDFYDERYPFGTLVPTVATEAFTIVGTGSGPGL
Ga0307277_100751091	3300028881	Soil	NLRFTTSFPKLVEALLGLGNDVELVNRNDFYDERYPFGTLVPTVATGAFTIVGTGSGPGL
Ga0307277_101886191	3300028881	Soil	KPLVNLRFTTSVPKLVENLLGLGNDVELVNRSDFYDERYPFGTLVPTVATDTFTIVGTGSGPGL
Ga0299907_109341732	3300030006	Soil	FTSSFPELAAKLLGLSREVTLVNRSDFYDERYPFGTLVPAVATEAFTIVGSGSGPGL
Ga0299907_113412422	3300030006	Soil	DGTFRIENGKVTKPLVNLRFTTSFPELAAKLIGLSREVTLVNRSDFYDERYPFGTLVPAIATEAFTIVGSGSGPGL
Ga0308187_101178841	3300031114	Soil	RIEGGKVSKPLVNLRFTTSFPKLVESLVGLEKDVELVNRSDFYEERYPFGTLVPAVATEAFTIVGTGSGPGL
Ga0308187_101629591	3300031114	Soil	PLVNLRFTTSFPKLVEGILGLSDEVELVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0308187_103877812	3300031114	Soil	RIEGGKVTKPLVNLRFTTSFPKLVEALLGLGNDVELVNRNDFYDERYPFGTLVPTVATGAFTIVGTGSGPGL
Ga0299914_107780041	3300031228	Soil	KVTKPLVNLRFTTSFPALAAGLLGLTEEVTLVNRSDFYDERYPYGTLVPAVATKAFTIVGTGSGPGL
Ga0310907_104708661	3300031847	Soil	FTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSRPGL
Ga0310892_101765561	3300031858	Soil	KPLVNLRFTTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0307406_101045025	3300031901	Rhizosphere	KPLVNLRFTTSFPKLVEEILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0214473_122197652	3300031949	Soil	DGTFRIVNGEITEPLVNLRFTTSFPELARDLLGLTSHVTLVNTADFYDDRYPTGSLVPGVATESFTIIGAGSGPGL
Ga0307409_1000147141	3300031995	Rhizosphere	GKVSKPLVNLRFTTSFPKLVENLVGLEKDVELVNRSDFYEERYPFGTLVPAVATEAFTIVGTGSGPGL
Ga0307409_1027921501	3300031995	Rhizosphere	PLVNLRFTTSFPKLVEEILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0307414_119375071	3300032004	Rhizosphere	DGTFRIEGGRVTEPLVNLRFTTSFPKLVADLRALSSDVVLVNRSDFYDERYPFGTLVPAVATGSFTIVGTGSGPGL
Ga0310895_104139852	3300032122	Soil	TTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0214471_105004321	3300033417	Soil	VTRPLVNLRFTTSFPAFIDKLLGLGKEVVLVNRSDFYDERYPFGTLVPHAASEAFTVVGTGSGPGL
Ga0247829_109551821	3300033550	Soil	GKVTKPLVNLRFTTSFPKLVEGILGLSDEVALVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSGPGL
Ga0364935_0092210_2_199	3300034151	Sediment	TTPVVNLRFTTSFPALVAGLLGLTEEATLVNRSDFYDERYPFGTLVPAVATEAFTIVGTGSGPGL
Ga0314803_047804_553_732	3300034678	Soil	LRFTTSFPKLVEGILGLSDEVVLVNRSDYYDERYPFGTRVPAIATSAFTIVGTGSRPGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102753

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences