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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F102766 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 66 residues |
| Representative Sequence | HQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANSGSERLEVIEVEVRRK |
| Number of Associated Samples | 82 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 75 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.73 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (13.861 % of family members) |
| Environment Ontology (ENVO) | Unclassified (42.574 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (58.416 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 30.00% Coil/Unstructured: 70.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.73 |
| Powered by PDBe Molstar | |
| SCOP family | SCOP domain | Representative PDB | TM-score |
|---|---|---|---|
| b.82.1.2: Germin/Seed storage 7S protein | d2v09a_ | 2v09 | 0.81926 |
| b.82.1.0: automated matches | d4leja2 | 4lej | 0.81486 |
| b.82.1.2: Germin/Seed storage 7S protein | d6v7ga1 | 6v7g | 0.81464 |
| b.82.1.0: automated matches | d5vf5a2 | 5vf5 | 0.81454 |
| b.82.1.2: Germin/Seed storage 7S protein | d1fi2a_ | 1fi2 | 0.81189 |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF08450 | SGL | 5.94 |
| PF01161 | PBP | 4.95 |
| PF02518 | HATPase_c | 3.96 |
| PF07883 | Cupin_2 | 3.96 |
| PF00903 | Glyoxalase | 2.97 |
| PF01833 | TIG | 1.98 |
| PF14534 | DUF4440 | 1.98 |
| PF06108 | DUF952 | 1.98 |
| PF01063 | Aminotran_4 | 0.99 |
| PF13847 | Methyltransf_31 | 0.99 |
| PF01050 | MannoseP_isomer | 0.99 |
| PF13186 | SPASM | 0.99 |
| PF06831 | H2TH | 0.99 |
| PF03544 | TonB_C | 0.99 |
| PF02954 | HTH_8 | 0.99 |
| PF08327 | AHSA1 | 0.99 |
| PF13420 | Acetyltransf_4 | 0.99 |
| PF13627 | LPAM_2 | 0.99 |
| PF06452 | CBM9_1 | 0.99 |
| PF00932 | LTD | 0.99 |
| PF01327 | Pep_deformylase | 0.99 |
| PF03466 | LysR_substrate | 0.99 |
| PF05685 | Uma2 | 0.99 |
| PF00561 | Abhydrolase_1 | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG3386 | Sugar lactone lactonase YvrE | Carbohydrate transport and metabolism [G] | 5.94 |
| COG3391 | DNA-binding beta-propeller fold protein YncE | General function prediction only [R] | 5.94 |
| COG1881 | Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family | General function prediction only [R] | 4.95 |
| COG0115 | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase | Amino acid transport and metabolism [E] | 1.98 |
| COG3502 | Uncharacterized conserved protein, DUF952 family | Function unknown [S] | 1.98 |
| COG0242 | Peptide deformylase | Translation, ribosomal structure and biogenesis [J] | 0.99 |
| COG0266 | Formamidopyrimidine-DNA glycosylase | Replication, recombination and repair [L] | 0.99 |
| COG0810 | Periplasmic protein TonB, links inner and outer membranes | Cell wall/membrane/envelope biogenesis [M] | 0.99 |
| COG4636 | Endonuclease, Uma2 family (restriction endonuclease fold) | General function prediction only [R] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 13.86% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 11.88% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 8.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 6.93% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 6.93% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 4.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.96% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 3.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 2.97% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 2.97% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.97% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.98% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.98% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.99% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 0.99% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.99% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.99% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.99% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 0.99% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.99% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.99% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.99% |
| Switchgrass, Maize And Mischanthus Litter | Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter | 0.99% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459017 | Litter degradation ZMR4 | Engineered | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004643 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 | Environmental | Open in IMG/M |
| 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 | Host-Associated | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
| 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Environmental | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
| 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Host-Associated | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
| 3300006876 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 | Environmental | Open in IMG/M |
| 3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009610 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 | Environmental | Open in IMG/M |
| 3300009840 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300011434 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2 | Environmental | Open in IMG/M |
| 3300012160 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2 | Environmental | Open in IMG/M |
| 3300012355 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG | Environmental | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012892 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 | Environmental | Open in IMG/M |
| 3300012901 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1 | Environmental | Open in IMG/M |
| 3300012903 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1 | Environmental | Open in IMG/M |
| 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014868 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT830_16_10D | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300018422 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T | Environmental | Open in IMG/M |
| 3300018476 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T | Environmental | Open in IMG/M |
| 3300023069 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5 | Environmental | Open in IMG/M |
| 3300025160 | Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2 | Environmental | Open in IMG/M |
| 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027533 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes) | Environmental | Open in IMG/M |
| 3300027639 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027695 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027907 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300031538 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1 | Environmental | Open in IMG/M |
| 3300031547 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4 | Environmental | Open in IMG/M |
| 3300031858 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2 | Environmental | Open in IMG/M |
| 3300031892 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2 | Environmental | Open in IMG/M |
| 3300031913 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4 | Environmental | Open in IMG/M |
| 3300031943 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2 | Environmental | Open in IMG/M |
| 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Host-Associated | Open in IMG/M |
| 3300032000 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3 | Environmental | Open in IMG/M |
| 3300032012 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3 | Environmental | Open in IMG/M |
| 3300032013 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300032144 | Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil | Environmental | Open in IMG/M |
| 3300034115 | Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17 | Environmental | Open in IMG/M |
| 3300034662 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300034664 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| 4ZMR_04223860 | 2170459017 | Switchgrass, Maize And Mischanthus Litter | VVLQDSAGKGLATGPMSFEFNEPGAWGFFDVGVRHEISNIGTAPLELIEVEVRRK |
| JGI10216J12902_1037545572 | 3300000956 | Soil | HKAPVVVLQDSEGKGTATGPMSFEFYEPGSWAFYDAGARHELANTGTVKLEVLEVEVRRK |
| JGI10216J12902_1039852001 | 3300000956 | Soil | AGKPEMSNRWFRVHRVALAPGEKTPAHQHKAPVVLLQDTAGKGVASGAMTFEFNEPGQWGFFDSGARHEIANTGTARLELLEVEVRRR* |
| JGI10216J12902_1171510821 | 3300000956 | Soil | QHKAPVVVLQDTAGKGLGAGGMKFEFNEPGQWAFFDAGDRHEISNTGDGRLELIEVEVRRK* |
| JGI10216J12902_1208159222 | 3300000956 | Soil | GKGTATGPMSFEFYEPGAWAFYDAGARHEIANTGTAKLEVLEVEVRRK* |
| Ga0062593_1007882992 | 3300004114 | Soil | QDSTGKGIASGPMTFEFNEPGQWGFFDTGVRHEMTNTGTEPLELLEVEVRRR* |
| Ga0062589_1004476572 | 3300004156 | Soil | HQHKAPVVVLQDSTGKGIASGPMTFEFNEPGQWGFFDAGARHEMTNTGTERLELLEVEVRRR* |
| Ga0062591_1024320451 | 3300004643 | Soil | KAPAHQHKAPVVVLQDSSGKGVATGPMTFEFNEPGQWGFFDTGARHEIANTGTERLELIEVEVRRR* |
| Ga0065714_101491082 | 3300005288 | Miscanthus Rhizosphere | PGEKSSSHQHKAPVVILQDTAGKGLGVGGMTFEFNEPGQWAYFDPGDRHQISNTGDSRLELIEVEVRRK* |
| Ga0070660_1006940481 | 3300005339 | Corn Rhizosphere | RAYRIALAPGEKSPSHQHKAPVVILQDTAGKGLGIGGMTFEFNEPGQWAYFDPGDRHQISNTGDSRLELIEVEVRRK* |
| Ga0070668_1017524452 | 3300005347 | Switchgrass Rhizosphere | ESANRWFRVYRVALAPGEKTPAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK* |
| Ga0070669_1000101221 | 3300005353 | Switchgrass Rhizosphere | VVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK* |
| Ga0070669_1019271182 | 3300005353 | Switchgrass Rhizosphere | GKGVAAGAMSFEFNEPGQWGFYDSGARHELTNSGSERLELIEVEIRRR* |
| Ga0070675_1018446802 | 3300005354 | Miscanthus Rhizosphere | HQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANSGSERLEVIEVEVRRK* |
| Ga0070673_1000425591 | 3300005364 | Switchgrass Rhizosphere | GTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK* |
| Ga0070673_1015838561 | 3300005364 | Switchgrass Rhizosphere | QHKAPVVVLQDSPGKGAASGPMAFELNEPGQWAFFDTGARHEIANNGNERLEVIEVEIRRK* |
| Ga0070694_1014915631 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | PVVILQDTAGKGLGIGGMTFEFNEPGQWAYFDPGDRHQIVNSGDSRLELIEVEVRRK* |
| Ga0070708_1005832201 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | SNRWFRVYRVALGPGEKTAMHEHTAPVVILQDTAGKAFASGAMRFEFNEPGQWGFYDAGSRHEITNNGDGRIELVEVEVRRK* |
| Ga0070698_1013360101 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MSNRWFRVHRVTLAPGEKAPAHQHKAPVVVLQDSTGKGIASGPMTFEFNEPGQWGFFDAGARHEMTNTGTERLELLEVEVRRR* |
| Ga0070679_1012223242 | 3300005530 | Corn Rhizosphere | SHQHKAPVVILQDTVGKGIGVGGMTFEFNEPGQWAYFDPGDRHQISNTGDSRLELIEVEVRRK* |
| Ga0070664_1006381441 | 3300005564 | Corn Rhizosphere | EKSAPHQHKAPVVILQDTAGRGLGIGGMTFEFNEPGQWAYFDPGDRHQITNTGDSRLELIEVEVRK* |
| Ga0068861_1004663222 | 3300005719 | Switchgrass Rhizosphere | GEKTPAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGNERLEVIEVEIRRK* |
| Ga0068861_1016777361 | 3300005719 | Switchgrass Rhizosphere | SNRWFRIHRVALAPGEKTAHQHSAPVVILQDTAGKATATGAVRFEFNEPGQWGFFDAGSRHEISNAGDGRVELIEVEVRRK* |
| Ga0068861_1023376462 | 3300005719 | Switchgrass Rhizosphere | APVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANSGSERLEVIEVEVRRK* |
| Ga0068870_101762363 | 3300005840 | Miscanthus Rhizosphere | TASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK* |
| Ga0068862_1003444271 | 3300005844 | Switchgrass Rhizosphere | PVVVLQDSAGKGVATGPATFEFNEPGQWGFFDTGARHEISNSGTTPLELIEVEVRRK* |
| Ga0081455_110307371 | 3300005937 | Tabebuia Heterophylla Rhizosphere | PHQHTAAVVILQDTAGKASATGAMPFEFNEPGQWGYYAAGSRHEISNAGDARVELIEIEVRRK* |
| Ga0075428_1012136652 | 3300006844 | Populus Rhizosphere | LAPGEKSPAHQHKAPVVVLQDSAGKGTASGAMSFEFNEPGQWGFFDSGVRHEISNSGTDRLELIEVEVRRR* |
| Ga0075430_1006004602 | 3300006846 | Populus Rhizosphere | VALAPGEKTPAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANSGSERLEVIEVEIRRK* |
| Ga0079217_100346793 | 3300006876 | Agricultural Soil | APGEKAAHQHKAPVVVLQDSEGKGVASGAMSFEFNEPGQWGFFDSGARHEISNGSTGRLELLEVEIRRK* |
| Ga0075429_1008984592 | 3300006880 | Populus Rhizosphere | KAPPHQHKAAVVMLQDTSGRGLAVGGMTFEFNEPGQWAYFDPADRHQVSNTGDARLELIEVEVRRK* |
| Ga0075419_101599483 | 3300006969 | Populus Rhizosphere | PHQHKAAVVILQDTSGRGLAVGGMTFEFNEPGQWAYFDPADRHQVSNTGDARLELIEVEVRRK* |
| Ga0111539_122470751 | 3300009094 | Populus Rhizosphere | VVLLQDSAGKGTAAGAMSFEFNEPGQWGFFDSGVRHEISNTGADRLELIEVEVRRK* |
| Ga0111539_131875131 | 3300009094 | Populus Rhizosphere | TDKPISSNKWFLAYRIAVAPGEKTPPHQHKAAVVIPQDTAGKGLGVGGMTFEFNEPGQWAYFDSGDRHQVSNTGDSRLELIEVEVRRK* |
| Ga0114129_127196712 | 3300009147 | Populus Rhizosphere | AESANRWFRVYRVALAPGEKTPAHQHKAPVVVLQDSAGKGAASGPMSFELNEPGQWAFFDTGARHEIANNGSDRLEVIEVEIRRK* |
| Ga0111538_105812951 | 3300009156 | Populus Rhizosphere | TGPMSFEFWEPGSWAYYDAGARHELTNTGTAKLEVLEVEVRRK* |
| Ga0111538_139168202 | 3300009156 | Populus Rhizosphere | FRVYRVVLAPGEKAPAHQHKAPVVVLQDSSGKGIASGPMTFEFNEPGQWGFFDAGARHEMTNTGTERLELLEVEVRRR* |
| Ga0075423_122680601 | 3300009162 | Populus Rhizosphere | HQHKAPVVILQDTVGKGIGVGGMTFEFNEPGQWAYFDPGDRHQISNTGDSRLELIEVEVRRK* |
| Ga0105242_100056515 | 3300009176 | Miscanthus Rhizosphere | GFAGKAESANRWFRVYRVALAPGEKTPAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK* |
| Ga0105340_12435232 | 3300009610 | Soil | LQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANRGSERLEVIEVEVRRK* |
| Ga0126313_118616172 | 3300009840 | Serpentine Soil | PGEKTQAHQHKTPVVVLQDSAGKGVATGPTTFEFNEPGQWGFFDSGARHEITNSGTAPLELIEVEVRRR* |
| Ga0126382_111343632 | 3300010047 | Tropical Forest Soil | HTAAVVILQDTAGKASATGAMPFEFNEPGQWGYYAAGSRHEITNSGDGRIELIEVEVRRK |
| Ga0126383_133947942 | 3300010398 | Tropical Forest Soil | RHRHKATVVVLQTSDGRGLATGPMKFELNEPGQWAFFDTGLDHVIKNTGNTRLEFIEVEVRHPQ* |
| Ga0134122_129464631 | 3300010400 | Terrestrial Soil | EKTPAHQHKAPVVVLQDTAGKGIATGPMAFELNEPGQWGFFDTGVSHEIRNTGTERMELIEVEVRSR* |
| Ga0137464_10061285 | 3300011434 | Soil | IALAPGEKSPSHQHKAPVVILQDTAGKGLGLGGMTFEFNEPGQWAYFDPGDRHQITNTGDSRLELIEVEVRRK* |
| Ga0137349_10906871 | 3300012160 | Soil | PGEKSPAHQHTAPVVLLQDRAGKGTASGAMSFEFNEPGQWGFFDSGVRHEISNSGADRLELIEVEVRRK* |
| Ga0137369_110827871 | 3300012355 | Vadose Zone Soil | GEKTAMHEHTAPVVILQDTAGKAFASGAMRFEFNEPGQWAFYDAGSRHEITNSGDGRIELVEVEVRRK* |
| Ga0150984_1212449191 | 3300012469 | Avena Fatua Rhizosphere | LAPGEKTPPHQHKAPVVLLEDVGGKGTSTGPMNFEFNEPGSWAYYDKDVRHEITNSGSTRLEIIEVEVRRK* |
| Ga0157294_101722692 | 3300012892 | Soil | GNLVNKYFRVHRVALGPGEKASHTHKAPVVVLQDSEGKGTATGPMSFEFYEPGSWAFYDAGARHELANTGTAKLEVLEVEVRRK* |
| Ga0157288_103434742 | 3300012901 | Soil | VLQDTTGKGIAAGPMAFELNEPGQWGFFDTGVSHEIRNTGTERMELIEVEVRSR* |
| Ga0157289_103220711 | 3300012903 | Soil | QHKAPVVVLQDSAGRGTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK* |
| Ga0157380_101422251 | 3300014326 | Switchgrass Rhizosphere | LQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK* |
| Ga0157380_110791092 | 3300014326 | Switchgrass Rhizosphere | MSNRWFRIHRVVLEPGQKTTHQHKAPVVVLQDSAGRGLVSGAMSFEFNEPGQWGFFDSGVRHEVTNSGTERLELIEVEVRRR* |
| Ga0157380_125248562 | 3300014326 | Switchgrass Rhizosphere | TSHTHKAPVVVLQDSEGKGTATGPMSFEFYEPGSWAFYDAGARHELANTGTAKLEVLEVEVRRK* |
| Ga0180088_10959882 | 3300014868 | Soil | AYRIALMPGEKTPPHQHKAPVVVLQDSAGKGRGTGGMTFEFNEPGQWAFFDIGDRHEISNTGDGRLELVEVEVRRK* |
| Ga0132258_109475681 | 3300015371 | Arabidopsis Rhizosphere | VVILQDTAGKASATGAMPFEFNEPGQWGYYAAGSRHEISNAGDARVELIEVEVRRK* |
| Ga0132258_121380302 | 3300015371 | Arabidopsis Rhizosphere | RIHRVVLAPGEKTAAHQHTAAVVILQDTAGKASATGAMPFEFNEPGQWGYYAAGSRHEISNVGDARVELIEVEVRRK* |
| Ga0132256_1027243972 | 3300015372 | Arabidopsis Rhizosphere | EKTAAHQHTAAVVILQDTAGKASATGAMPFEFNEPGQWGYYAAGSRHEISNVGDARVELIEVEVRRK* |
| Ga0190265_107192112 | 3300018422 | Soil | TGKGLAVGPVTFELNEPGQWAFFDIGSRHEITNTGDSRIELIEVEVRRK |
| Ga0190274_105165461 | 3300018476 | Soil | RAYRIALAPGEKSAPHQHKAPVVILQDTAGRGLGIGGMTFEFNEPGQWAYFDPGDRHQLSNTGDSRLELIEVEVRRK |
| Ga0190274_125050602 | 3300018476 | Soil | LQDSEGKGVATGPMTFELNEPGGWAFFDTGVRHEITNSGTARLEVIEVEVRRR |
| Ga0247751_10183902 | 3300023069 | Soil | TLAPGEKAPPHQHKAPVVVLQDSTGKGIASGPMTFEFNEPGQWGFFDAGARHEMTNTGTERLELLEVEVRRR |
| Ga0209109_104129442 | 3300025160 | Soil | ELEPGQKTTSHVHTAPVAVIQATAGKGLGAGAMTWEFNEPGQWAFFDAGDRHEIRNAGDGRIELIEVEIRGR |
| Ga0207642_107169371 | 3300025899 | Miscanthus Rhizosphere | PAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGNERLEVIEVEIRRK |
| Ga0207681_104909951 | 3300025923 | Switchgrass Rhizosphere | GKGVAAGAMSFEFNEPGQWGFYDSGARHELTNSGSERLELIEVEIRRR |
| Ga0207650_107830462 | 3300025925 | Switchgrass Rhizosphere | KSAPHQHKAPVVILQDTAGKGVGVGGMTFEFNEPGQWAYFDPGDRHQISNTGDSRLELIEVEVRRK |
| Ga0207659_104393421 | 3300025926 | Miscanthus Rhizosphere | KSPSHQHKAPVVILQDTAGKGLGIGGMTFEFNEPGQWAYFDPGDRHQITNTGDSRLELIEVEVRRK |
| Ga0207706_113670232 | 3300025933 | Corn Rhizosphere | PSHQHKAPVVILQDTAGRGLGIGGMTFEFNEPGQWAYFDPGDRHQITNTGDSRLELIEVEVRK |
| Ga0207689_107575112 | 3300025942 | Miscanthus Rhizosphere | HQHKAPVVVLQDSSGKGIASGPMTFEFNEPGQWGFFDAGARHEMTNTGTERLELLEVEVRRR |
| Ga0207712_109378822 | 3300025961 | Switchgrass Rhizosphere | LQDTAGKGLGIGGMTFEFNEPGQWAYFDPGDRHQITNTGDSRLELIEVEVRRK |
| Ga0207712_114806811 | 3300025961 | Switchgrass Rhizosphere | TPAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK |
| Ga0207677_116781722 | 3300026023 | Miscanthus Rhizosphere | KPEMSNRWFRVYRVVLAPGEKAPAHQHKAPVVVLQDSSGKGIASGPMTFEFNEPGQWGFFDAGARHEMTNTGTERLELLEVEVRRR |
| Ga0207708_109490121 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | PKHRHTAPVAVFQASAGRGGVGIGGMKFEFNDPGQWAFFDAGDAHEIKNAGEARMEFVEVEVRRAK |
| Ga0207675_1010932402 | 3300026118 | Switchgrass Rhizosphere | ANRWFRVYRVALAPGETTPAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGNERLEVIEVEIRRK |
| Ga0208185_10362381 | 3300027533 | Soil | LQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANRGSERLEVIEVEVRRK |
| Ga0209387_11206712 | 3300027639 | Agricultural Soil | LALAPGEKSPAHQHKAPVVVLQDSAGKATATGAMTFEFNEPGQWGFFDSGARHEIANTGAERIELIEVEVRRK |
| Ga0209966_11536251 | 3300027695 | Arabidopsis Thaliana Rhizosphere | GEKTSAHQHKAPVVVLQDSAGKGVATGPATFEFNEPGQWGFFDTGARHEISNSGTTPLELIEVEVRRK |
| Ga0209481_105886941 | 3300027880 | Populus Rhizosphere | AVVMLQDTSGRGLAVGGMTFEFNEPGQWAYFDPADRHQVSNTGDARLELIEVEVRRK |
| Ga0207428_102457961 | 3300027907 | Populus Rhizosphere | AHQHKAPVVVLQDSAGKGVATGPATFEFNEPGQWGFFDTGARHEISNSGTTPLELIEVEVRRK |
| Ga0268265_106354522 | 3300028380 | Switchgrass Rhizosphere | KGIAAGPMAFELNEPGQWGFFDTGVSHEIRNTGTERMELIEVEVRSK |
| Ga0268265_110121131 | 3300028380 | Switchgrass Rhizosphere | KAAHQHKASVVVLQDSAGKGAASGPMAFELSEPGSWAFFDSGARHEISNSGPERLEVIEVEIRRR |
| Ga0268265_121816742 | 3300028380 | Switchgrass Rhizosphere | RVYRVVLAPGEKAPAHQHKAPVVVLQDSSGKGIASGPMTFEFNEPGQWGFFDAGARHEMTNTGTERLELLEVEVRRR |
| Ga0268265_124859481 | 3300028380 | Switchgrass Rhizosphere | PVVVLQDSAGKGTASGPMSFELNEPGQWGFFDTGARHEIANSGSERLEVIEVEVRRK |
| Ga0310888_101063511 | 3300031538 | Soil | AGKGLASGPMPFEFNEPGSWGFFDTGARHEMTNSGTERLELIEVEIRRR |
| Ga0310888_108976041 | 3300031538 | Soil | VVVLQDTAGKGLGAGGMTFEFNEPGQWAFFDAGDRHQISNIGAGRLELIEVEVRRK |
| Ga0310887_105791021 | 3300031547 | Soil | KSPSHQHKAPVVILQDTAGKGLGIGGMTFEFNEPGQWAYFDPGDRHQITNTGDSRLELIEVEVRK |
| Ga0310892_100656733 | 3300031858 | Soil | APVVVLQDSAGKGRASGPMSFEFNEPGQWGFFDSGVRHEVTNSGTERLELIEVEIRRR |
| Ga0310893_105882502 | 3300031892 | Soil | SAGKGLASGPMPFEFNEPGSWGFFDTGARHEMTNSGTERLELIEVELRRR |
| Ga0310891_101010621 | 3300031913 | Soil | RIALAPSEKSPSHQHKAPVVILQDTAGKGLGIGAMSFEFNESGQWAYFDPGDRHQITNTGDSRLELIEVEVRRK |
| Ga0310885_102508862 | 3300031943 | Soil | RIALAPGEKSPSHQHKAPVVILQDTAGKGLGIGAMSFEFNESGQWAYFDPGDRHQITNTGDSRLELIEVEVRRK |
| Ga0307409_1003403341 | 3300031995 | Rhizosphere | RVHRLALAPGEKSQAHQHKAPVVVLQDSAGKASATGAMTFEFNEPGQWGFFDSGARHEIANTGTERIELIEVEVRRR |
| Ga0310903_103316801 | 3300032000 | Soil | EMSNRWFRIHRVVLEPGQKTTAHQHKAPVVVLQDSAGKGLASGPMPFEFNEPGSWGFFDTGARHEMTNSGTERLELIEVELRRR |
| Ga0310902_105581971 | 3300032012 | Soil | AGKAESANRWFRVYRVALAPGEKTPAHQHKAPVVVLQDSAGKGTASGPMSFELNEPGQWAFFDTGARHEIANNGSERLEVIEVEIRRK |
| Ga0310906_103801752 | 3300032013 | Soil | HQHKAPVVVLQDSAGRGTASGPMSFEFNEPGQWGFFDSGARHEIANTGTERLELIEVEIRRR |
| Ga0310911_105500083 | 3300032035 | Soil | DGRGLASGPMKFELNEPGQWAFFDSGASHEIRNTGTLPLQVIEVELRQPRSKD |
| Ga0310890_108514062 | 3300032075 | Soil | PVVVLQDTAGKGLGAGGMTFEFNEPGQWGFFDAGDRHQISNTGDGRLELIEVEVRRK |
| Ga0310890_116089022 | 3300032075 | Soil | RWFRIHRVVLAPGEKSPAHQHKAPVVLLQDSAGKGTASGAMSFEFNEPGQWGFFDSGVRHEISNSGADRLELIEVEVRRK |
| Ga0315910_111424501 | 3300032144 | Soil | PHEHNAPVVVLQDSAGNGTASGPMSFELNEPGQWAFFDTGARHEISNSGSERLEVIEVEIRRK |
| Ga0364945_0046565_1_228 | 3300034115 | Sediment | HRVVLAPGEKTPAHQHKAPVVVLQDSAGKGVASGAVTFEFNEPGQWGFFDSGARHEISNSGTARLELIEVEVRRR |
| Ga0314783_013824_14_265 | 3300034662 | Soil | MSNRWFRVHRVALAPGEKAPAHQHKAPVVVLQDSAGKGTATGPMSFEFNEPGQWGFFDSGARHEIANTGAERLELIEVEIRRR |
| Ga0314786_058570_6_173 | 3300034664 | Soil | VVLQDSAGKGTATGPMSFEFNEPGQWGFFDSGARHEIANTGAERLELIEVEIRRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |