Metagenome Family F102828

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F102828
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	49 residues
Representative Sequence	PRHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.99 %
% of genes near scaffold ends (potentially truncated)	98.02 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (68.317 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.485 % of family members)
Environment Ontology (ENVO)	Unclassified (62.376 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (52.475 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.33% β-sheet: 18.67% Coil/Unstructured: 72.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02627	CMD	8.91
PF04972	BON	7.92
PF09995	MPAB_Lcp_cat	6.93
PF02211	NHase_beta	3.96
PF02979	NHase_alpha	2.97
PF13561	adh_short_C2	1.98
PF08281	Sigma70_r4_2	1.98
PF00753	Lactamase_B	1.98
PF12697	Abhydrolase_6	1.98
PF00196	GerE	0.99
PF01037	AsnC_trans_reg	0.99
PF03795	YCII	0.99
PF13412	HTH_24	0.99
PF12680	SnoaL_2	0.99
PF05977	MFS_3	0.99
PF00903	Glyoxalase	0.99
PF04542	Sigma70_r2	0.99
PF01381	HTH_3	0.99
PF12681	Glyoxalase_2	0.99
PF02574	S-methyl_trans	0.99
PF08044	DUF1707	0.99
PF08241	Methyltransf_11	0.99
PF01266	DAO	0.99
PF03807	F420_oxidored	0.99
PF00561	Abhydrolase_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	8.91
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	8.91
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.99
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.99
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.99
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.99
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.99
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.99
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.32 %
Unclassified	root	N/A	31.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.32 %
Unclassified	root	N/A	31.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.32 %
Unclassified	root	N/A	31.68 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.49 %
Unclassified	root	N/A	31.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	49.50 %
Unclassified	root	N/A	31.68 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.60 %
Unclassified	root	N/A	31.68 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.68 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	9.90 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.95 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	2.97 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.99 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.68 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	9.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.95 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2.97 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.97 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.99 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.68 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	5.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.95 %
Umezawaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Umezawaea	3.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.97 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	1.98 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.99 %
Sinomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Sinomonas	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.68 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples	5.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.95 %
Umezawaea tangerina	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Umezawaea → Umezawaea tangerina	3.96 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	2.97 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	1.98 %
Actinoplanes palleronii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes palleronii	0.99 %
Sinomonas notoginsengisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Sinomonas → Sinomonas notoginsengisoli	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.68 %
uncultured Pseudonocardia sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	5.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.95 %
Umezawaea tangerina	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Umezawaea → Umezawaea tangerina	3.96 %
Streptomyces sp. TLI_55	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_55	2.97 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	1.98 %
Actinoplanes palleronii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes palleronii	0.99 %
Sinomonas notoginsengisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Sinomonas → Sinomonas notoginsengisoli	0.99 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459012\|GOYVCMS02H87EC	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005337\|Ga0070682_100279218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1217	Open in IMG/M
3300005436\|Ga0070713_102467120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300005444\|Ga0070694_101060363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300005458\|Ga0070681_10708343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	923	Open in IMG/M
3300005545\|Ga0070695_100479963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	958	Open in IMG/M
3300005564\|Ga0070664_102009351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300005764\|Ga0066903_104703340	Not Available	727	Open in IMG/M
3300005764\|Ga0066903_105344156	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300005764\|Ga0066903_105660188	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300006032\|Ga0066696_10707016	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300006804\|Ga0079221_10947926	Not Available	638	Open in IMG/M
3300010043\|Ga0126380_11798514	Not Available	554	Open in IMG/M
3300010046\|Ga0126384_10293949	Not Available	1333	Open in IMG/M
3300010048\|Ga0126373_12331594	Not Available	595	Open in IMG/M
3300010048\|Ga0126373_13037178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	523	Open in IMG/M
3300010326\|Ga0134065_10250876	Not Available	660	Open in IMG/M
3300010358\|Ga0126370_11929319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300010362\|Ga0126377_12901045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300010366\|Ga0126379_12417032	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300010371\|Ga0134125_10171542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2417	Open in IMG/M
3300010398\|Ga0126383_11892752	Not Available	685	Open in IMG/M
3300012200\|Ga0137382_10880153	Not Available	646	Open in IMG/M
3300012208\|Ga0137376_11351052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	603	Open in IMG/M
3300012285\|Ga0137370_10791983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	588	Open in IMG/M
3300012354\|Ga0137366_10045067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3400	Open in IMG/M
3300012359\|Ga0137385_11060445	Not Available	668	Open in IMG/M
3300012363\|Ga0137390_11998855	Not Available	505	Open in IMG/M
3300012948\|Ga0126375_10393980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300012951\|Ga0164300_10569270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	662	Open in IMG/M
3300012987\|Ga0164307_10384425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1029	Open in IMG/M
3300016319\|Ga0182033_10966904	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300016357\|Ga0182032_10793577	Not Available	800	Open in IMG/M
3300016404\|Ga0182037_10833585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	797	Open in IMG/M
3300016404\|Ga0182037_11513589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300016422\|Ga0182039_12028929	Not Available	529	Open in IMG/M
3300016445\|Ga0182038_10757605	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300020581\|Ga0210399_10466551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1051	Open in IMG/M
3300025920\|Ga0207649_11150748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300025929\|Ga0207664_11052675	Not Available	728	Open in IMG/M
3300025945\|Ga0207679_11766271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300026805\|Ga0207507_105665	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031543\|Ga0318516_10642046	Not Available	605	Open in IMG/M
3300031544\|Ga0318534_10440943	Not Available	746	Open in IMG/M
3300031544\|Ga0318534_10593625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	629	Open in IMG/M
3300031545\|Ga0318541_10475502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_55	699	Open in IMG/M
3300031546\|Ga0318538_10485539	Not Available	669	Open in IMG/M
3300031549\|Ga0318571_10202628	Not Available	711	Open in IMG/M
3300031549\|Ga0318571_10442999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300031679\|Ga0318561_10595390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	609	Open in IMG/M
3300031680\|Ga0318574_10176060	Not Available	1223	Open in IMG/M
3300031680\|Ga0318574_10744527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300031681\|Ga0318572_10209977	Not Available	1138	Open in IMG/M
3300031713\|Ga0318496_10034054	All Organisms → cellular organisms → Bacteria	2586	Open in IMG/M
3300031713\|Ga0318496_10223325	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300031724\|Ga0318500_10208543	Not Available	938	Open in IMG/M
3300031736\|Ga0318501_10155845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1178	Open in IMG/M
3300031747\|Ga0318502_10446703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_55	772	Open in IMG/M
3300031748\|Ga0318492_10716053	Not Available	536	Open in IMG/M
3300031764\|Ga0318535_10175548	Not Available	958	Open in IMG/M
3300031764\|Ga0318535_10247294	Not Available	798	Open in IMG/M
3300031764\|Ga0318535_10554347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	510	Open in IMG/M
3300031765\|Ga0318554_10267865	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300031777\|Ga0318543_10025506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2253	Open in IMG/M
3300031777\|Ga0318543_10032995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	2027	Open in IMG/M
3300031781\|Ga0318547_10140957	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300031793\|Ga0318548_10191891	Not Available	1001	Open in IMG/M
3300031794\|Ga0318503_10210992	Not Available	629	Open in IMG/M
3300031805\|Ga0318497_10417219	Not Available	751	Open in IMG/M
3300031819\|Ga0318568_10509490	Not Available	750	Open in IMG/M
3300031835\|Ga0318517_10321425	Not Available	699	Open in IMG/M
3300031835\|Ga0318517_10424703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300031845\|Ga0318511_10310656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Umezawaea → Umezawaea tangerina	714	Open in IMG/M
3300031859\|Ga0318527_10173020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	910	Open in IMG/M
3300031859\|Ga0318527_10233137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes palleronii	782	Open in IMG/M
3300031879\|Ga0306919_10185992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	1536	Open in IMG/M
3300031890\|Ga0306925_10401739	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300031893\|Ga0318536_10259274	Not Available	883	Open in IMG/M
3300031897\|Ga0318520_10567261	Not Available	704	Open in IMG/M
3300031912\|Ga0306921_11090448	Not Available	896	Open in IMG/M
3300031942\|Ga0310916_10023548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4402	Open in IMG/M
3300031946\|Ga0310910_10103511	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2117	Open in IMG/M
3300031946\|Ga0310910_10173298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	1662	Open in IMG/M
3300031947\|Ga0310909_10401408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Umezawaea → Umezawaea tangerina	1151	Open in IMG/M
3300032001\|Ga0306922_10164421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Umezawaea → Umezawaea tangerina	2376	Open in IMG/M
3300032001\|Ga0306922_11323363	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300032025\|Ga0318507_10034224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1918	Open in IMG/M
3300032035\|Ga0310911_10113823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1496	Open in IMG/M
3300032044\|Ga0318558_10482954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300032055\|Ga0318575_10693316	Not Available	515	Open in IMG/M
3300032063\|Ga0318504_10081607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Sinomonas → Sinomonas notoginsengisoli	1421	Open in IMG/M
3300032064\|Ga0318510_10189779	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300032067\|Ga0318524_10090017	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300032068\|Ga0318553_10035589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Umezawaea → Umezawaea tangerina	2407	Open in IMG/M
3300032068\|Ga0318553_10271385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	886	Open in IMG/M
3300032089\|Ga0318525_10346092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_55	763	Open in IMG/M
3300032261\|Ga0306920_102393239	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300032783\|Ga0335079_10878321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	923	Open in IMG/M
3300033289\|Ga0310914_10157215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → environmental samples → uncultured Pseudonocardia sp.	2009	Open in IMG/M
3300033289\|Ga0310914_11383076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300034819\|Ga0373958_0055700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	845	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.04%
Host-Associated	Host-Associated	3.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.04%
Plants	Host-Associated → Plants	3.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.14%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026805	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-A (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N56_02401810	2170459012	Grass Soil	AAAVASAPRHYSVVRLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFG
Ga0070682_1002792181	3300005337	Corn Rhizosphere	EVPPEWHRDRVHAAAVASAPRHYSVVRLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFG*
Ga0070713_1024671201	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VHAAAVASAPRHYSVVRLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFG*
Ga0070694_1010603631	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFG*
Ga0070681_107083431	3300005458	Corn Rhizosphere	LHRGMIRGALLGPGHLVIQRTRYFDFRQQPAWHGLRRFS*
Ga0070695_1004799631	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	FRTREVPPEWHRDRVHAAAVASAPRHYSVVRLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFS*
Ga0070664_1020093511	3300005564	Corn Rhizosphere	APRHYSVVRLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFS*
Ga0066903_1047033401	3300005764	Tropical Forest Soil	IGGALLGRGHLVIERTRYFDFAQQPAWRGLRRFG*
Ga0066903_1053441561	3300005764	Tropical Forest Soil	VRLHRGVIRGALLGRDHLVIQRTRYLDFGQQPAWQGLRRFG*
Ga0066903_1056601882	3300005764	Tropical Forest Soil	YCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG*
Ga0066696_107070161	3300006032	Soil	AVAMAPRHYRAVRLHRGVIGGPLLGRGHLVIERTRYFDFAEQPAWQGLRRFG*
Ga0079221_109479261	3300006804	Agricultural Soil	RGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG*
Ga0126380_117985141	3300010043	Tropical Forest Soil	DLVHATAVALAPRHYCCVRLHRGIIRGALLGRGQLVIQQTRYFDFGQQPAWHGLRRFG*
Ga0126384_102939491	3300010046	Tropical Forest Soil	AAVASAPRHYRVVRLHRGMIRGALLGRGHLVIQRTRYIDFGQQPAWHGLRRFG*
Ga0126373_123315942	3300010048	Tropical Forest Soil	MAPRHYRAVRLHRGTIGGVLLGRGHLVIERTRYFDFAQQPAWRGLRRFE
Ga0126373_130371782	3300010048	Tropical Forest Soil	RLHRGMIRGALLGRGHLVIQRTRYIDFGQQPAWHGLRRFG*
Ga0134065_102508761	3300010326	Grasslands Soil	HAAAVALAPRHYRVVRLHRGMIGGALLGRGHVVIQRTRYFDFGQQPAWHGLRRFG*
Ga0126370_119293191	3300010358	Tropical Forest Soil	PPQWHRDRVHAAAVASASHHYRAVRLHRGMIRGALLGRGHLVIARTRYLDFTQQPAWHGLRQFG*
Ga0126377_129010452	3300010362	Tropical Forest Soil	VIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG*
Ga0126379_124170321	3300010366	Tropical Forest Soil	RLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG*
Ga0134125_101715424	3300010371	Terrestrial Soil	LFRTSEVPPEWHRDRVHAAAVASAPRHYSVVRLHRGMIRGALLGPGHLVIQRTRYFDFRQQPAWHGLRRFS*
Ga0126383_118927521	3300010398	Tropical Forest Soil	VPPQWHRDRVHAAAVAIAPRHYRVVRLHRGMIPGALLGRGPLVIQRTRYFDFGQEPAWHGLRRFG*
Ga0137382_108801531	3300012200	Vadose Zone Soil	PRHYRVVRLHRGMIGGALLGRSHVVIQRTRYFDFGQQPAWHGLRRFG*
Ga0137376_113510521	3300012208	Vadose Zone Soil	RHYRVVRLHRGMIRGPLLRRGPVVIERTRYFDFGQQPAWHGLRRFG*
Ga0137370_107919831	3300012285	Vadose Zone Soil	DVVHARAVALAPAHYLCVRLHRGVIPGALLGEGQLVIQRTRYFDFGRQPAWRGLRRFE*
Ga0137366_100450671	3300012354	Vadose Zone Soil	PEWHRDRVHAAAVALAPRHYRAVRLHRGMIAGALLGRGHVVIQRTRYLDFAQQPAWHGLRRFG*
Ga0137385_110604451	3300012359	Vadose Zone Soil	ALAPSHYRCLRLHRGIIRGALVGQGQLVIKRTRYFDFGRQPAWRGLRRFE*
Ga0137390_119988552	3300012363	Vadose Zone Soil	ARAVALAPSHYRCLRLHRGIIRGALLGHGHLVIKRTRYFDFGRQPAWRGLRRFE*
Ga0126375_103939801	3300012948	Tropical Forest Soil	EVPGEWHGDPVHARAVALAPRHYRSARLHRGVIRGALLGRGGLVVQRTRYFDFGRQPAWRAVRRFE*
Ga0164300_105692702	3300012951	Soil	AAAVASAPRHYSVVRLHRGMIRGALLGPGHLVIQRTRYFDFRQQPAWHGLRRFG*
Ga0164307_103844253	3300012987	Soil	PEWHRDRVHAAAVASAPRHYSVVRLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFS*
Ga0182033_109669042	3300016319	Soil	AVAIAPRHYCAVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQPAWQGLRRFG
Ga0182032_107935771	3300016357	Soil	GVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0182037_108335853	3300016404	Soil	VRLHRGIIGGALLGQGHLVIGRTRYFDFAQQPAWQGLRRFG
Ga0182037_115135892	3300016404	Soil	VAVANAPRHYSAVRLHRGMIRGALLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0182039_120289292	3300016422	Soil	HRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0182038_107576051	3300016445	Soil	YCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPVWQGLRRFG
Ga0210399_104665511	3300020581	Soil	TSEVPPAWHRDRVHAAAVALAPRHYGAVRLHGGIIRGAPLGRGQLVIQRTRYFDFGQQPAWHGLRRFE
Ga0207649_111507482	3300025920	Corn Rhizosphere	SVVRLHRGMIRGALLGPGHLVIQRTRYFDFRQQPAWHGLRRFS
Ga0207664_110526752	3300025929	Agricultural Soil	EVPPEWHHDLVHAKAVALAPRHYSIVRLHRGIIRGALLGRGHLIIQRTRYFDFGQHPTWRGLRQFEQG
Ga0207679_117662712	3300025945	Corn Rhizosphere	SVVRLHRGMIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFS
Ga0207507_1056652	3300026805	Soil	HAAAVASAPRHYRAVRLHRGMIRGVLLGRGHLVIARTRYLDFTQQPAWYGLRQFG
Ga0318516_106420461	3300031543	Soil	RLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318534_104409432	3300031544	Soil	LHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318534_105936252	3300031544	Soil	YSAVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQSAWQGLRRFG
Ga0318541_104755021	3300031545	Soil	AAVAIAPRHYRAVRLHRGMIPGALLGRGPLVIQRTRCFDYGQQPAWHGLRRFG
Ga0318538_104855392	3300031546	Soil	RHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318571_102026281	3300031549	Soil	HRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318571_104429991	3300031549	Soil	GMIRGTLLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0318561_105953901	3300031679	Soil	APHHYRAVRLHRGTIGGALLGRGHLVIERTRYFDFAQQPAWQGLRRFG
Ga0318574_101760602	3300031680	Soil	VPWQWHSDSVHAAAVAIAPRHYCSVRLHRGVIRGALLGRDHLVIQRTRYFDFRQQPAWQGLRRFG
Ga0318574_107445271	3300031680	Soil	RLHRGMIRGTLLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0318572_102099771	3300031681	Soil	CAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318496_100340541	3300031713	Soil	LHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318496_102233251	3300031713	Soil	RHYCAVRLHRGVIRGALLGRDHPVIQRTRYFDFGQQPAWQGLRRFG
Ga0318500_102085431	3300031724	Soil	APRHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPVWQGLRRFG
Ga0318501_101558451	3300031736	Soil	MIRGALLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0318502_104467032	3300031747	Soil	QWHRDRVHAAAVAIAPRHYRAVRLHRGMIPGALLGRGPLVIQRTRCFDYGQQPAWHGLRRFG
Ga0318492_107160532	3300031748	Soil	PEWHRDRVHAVAVASAPRHYSVVRLHRGMIRGALLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0318535_101755482	3300031764	Soil	PRHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318535_102472942	3300031764	Soil	PRHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318535_105543472	3300031764	Soil	YRAVRLHRGIIGGALLGRGHLVIERTRYFDFAQQPAWQGLRRFG
Ga0318554_102678651	3300031765	Soil	RHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318543_100255061	3300031777	Soil	VHAVAVASAPRHYSVVRLHRGMIRGALLGRGRLVIQRTRYFDFGQQPAWQALRQFG
Ga0318543_100329953	3300031777	Soil	RGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318547_101409573	3300031781	Soil	GVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318548_101918912	3300031793	Soil	WHSDSVHAAAVAIAPRHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRF
Ga0318503_102109922	3300031794	Soil	YCAVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318497_104172191	3300031805	Soil	PLARPSDSVHATAVAIAPRHYCSVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318568_105094902	3300031819	Soil	YCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318517_103214251	3300031835	Soil	AVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318517_104247032	3300031835	Soil	SAVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQSAWQGLRRFG
Ga0318511_103106561	3300031845	Soil	HRGIIGGALLGGGHLVIERTRYFDFAQQPAWQGLRRFG
Ga0318527_101730201	3300031859	Soil	YCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318527_102331372	3300031859	Soil	VHAAAVALAPRHYCCVRLHRGIIGGALLGRGQLVIQQTRYFDFGQQPAWHGLRRFG
Ga0306919_101859923	3300031879	Soil	VAIAPRHYCAVSLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0306925_104017393	3300031890	Soil	RGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318536_102592742	3300031893	Soil	HYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0318520_105672612	3300031897	Soil	CVVRLHRGTICGALIGAGRLVIERTRYFDFGQQPAWQGLRRFE
Ga0306921_110904481	3300031912	Soil	WHSDRVHAAAVALAPRHYCVVRLHRGTICGALIGAGRLVIERTRYFDFGQQPAWQGLRRF
Ga0310916_100235481	3300031942	Soil	RHYCAVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQPAWQGLRRFG
Ga0310910_101035111	3300031946	Soil	VAIAPRHYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0310910_101732981	3300031946	Soil	SDSVHAAAVAIAPRHYCSVRLHRGVIRGALLGRDHLVIQRTRYFDFRQQPAWQGLRRFG
Ga0310909_104014081	3300031947	Soil	HYCAVRLHRGIIGGALLGGGHLVIERTRYFDFAQQPAWQGLRRFG
Ga0306922_101644211	3300032001	Soil	RHYCAVRLHRGIIGGALLGRGHLVIERTRYFDFAQQPAWQGLRRFG
Ga0306922_113233631	3300032001	Soil	RGVIRGALLGRDQLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318507_100342243	3300032025	Soil	NAPRHYSAVRLHRGMIRGALLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0310911_101138233	3300032035	Soil	HAVAVANAPRHYSAVRLHRGMIRGALLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0318558_104829541	3300032044	Soil	RHYSAVRLHRGMIRGALLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0318575_106933161	3300032055	Soil	DVPRQWHRDRVHAAAVAIAPRHYCAVRLHRGVIRGALLGRDHPVIQRTRYFDFGQQPAWQGLRRFG
Ga0318504_100816072	3300032063	Soil	SSAPRHYCAVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318510_101897791	3300032064	Soil	SDAAVAIAPRHYCAVRLHRGVIRGALLGRDQLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318524_100900171	3300032067	Soil	HYCAVRLHRGVIRGALLGRDHPVIQRTRYFDFGQQPAWQGLRRFG
Ga0318553_100355891	3300032068	Soil	PAGWHTDRVHAAAVAMAPRHYCAVRLHRGIIGGALLGRGHLVIERTRYFDFAQQPAWQGLRRFG
Ga0318553_102713852	3300032068	Soil	HYCAVRLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWQGLRRFG
Ga0318525_103460921	3300032089	Soil	QRAAAVAIAPRHYRAVRLHRGMIPGALLGRGPLVIQRTRCFDYGQQPAWHGLRRFG
Ga0306920_1023932391	3300032261	Soil	ADRVHAAAVAIAPRHYCAVRLHRGVIRGALLGRDHPVIQRTRYFDFGQQPAWQGLRRFG
Ga0335079_108783211	3300032783	Soil	TPRHYSAVRLHWGVVGGALLGQGHLVIERTRYFDFAQQPAWQGLRRFGQPGAADRSG
Ga0310914_101572153	3300033289	Soil	RLHRGVIRGALLGRDHLVIQRTRYFDFGQQPAWHGLRRFG
Ga0310914_113830761	3300033289	Soil	GMIRGALLGRGRLVIQRTRYFDFGQQPAWQGLRQFG
Ga0373958_0055700_682_789	3300034819	Rhizosphere Soil	MIRGALLGPGHLIIQRTRYFDFRQQPAWHGLRRFS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102828

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences