Metagenome / Metatranscriptome Family F102829

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102829
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	64 residues
Representative Sequence	MLTIDQREITGPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGVLRLVHVR
Number of Associated Samples	82
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	98.00 %
% of genes near scaffold ends (potentially truncated)	98.02 %
% of genes from short scaffolds (< 2000 bps)	95.05 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.297 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.673 % of family members)
Environment Ontology (ENVO)	Unclassified (36.634 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (38.614 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.89% β-sheet: 14.44% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01381	HTH_3	25.74
PF13191	AAA_16	4.95
PF13560	HTH_31	3.96
PF00582	Usp	2.97
PF00196	GerE	1.98
PF08039	Mit_proteolip	0.99
PF00158	Sigma54_activat	0.99
PF13424	TPR_12	0.99
PF00814	TsaD	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	0.99
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
All Organisms	root	All Organisms	29.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
cellular organisms	root	All Organisms → cellular organisms	29.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	23.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5.94 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	4.95 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	5.94 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.95 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	5.94 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	4.95 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.30 %
Streptosporangium canum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	5.94 %
Geodermatophilus chilensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	4.95 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104691576	Not Available	697	Open in IMG/M
3300004479\|Ga0062595_100100565	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300005337\|Ga0070682_100664861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	831	Open in IMG/M
3300005338\|Ga0068868_100158996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1865	Open in IMG/M
3300005354\|Ga0070675_101847023	Not Available	557	Open in IMG/M
3300005363\|Ga0008090_15417380	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005367\|Ga0070667_101122516	Not Available	735	Open in IMG/M
3300005434\|Ga0070709_11114220	Not Available	632	Open in IMG/M
3300005434\|Ga0070709_11356325	Not Available	575	Open in IMG/M
3300005435\|Ga0070714_100391820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1311	Open in IMG/M
3300005435\|Ga0070714_101151200	Not Available	756	Open in IMG/M
3300005436\|Ga0070713_100164757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1981	Open in IMG/M
3300005436\|Ga0070713_100953201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	827	Open in IMG/M
3300005468\|Ga0070707_100819214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	895	Open in IMG/M
3300005547\|Ga0070693_100789567	Not Available	703	Open in IMG/M
3300005615\|Ga0070702_100534639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	867	Open in IMG/M
3300005764\|Ga0066903_101990798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1115	Open in IMG/M
3300005764\|Ga0066903_102834502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	940	Open in IMG/M
3300006028\|Ga0070717_10323039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1375	Open in IMG/M
3300006028\|Ga0070717_12135694	Not Available	504	Open in IMG/M
3300006059\|Ga0075017_100751104	Not Available	752	Open in IMG/M
3300006102\|Ga0075015_100540652	Not Available	676	Open in IMG/M
3300006804\|Ga0079221_10885728	Not Available	653	Open in IMG/M
3300006804\|Ga0079221_11202431	Not Available	589	Open in IMG/M
3300009011\|Ga0105251_10492856	Not Available	572	Open in IMG/M
3300009137\|Ga0066709_100846848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1329	Open in IMG/M
3300009174\|Ga0105241_12406440	Not Available	526	Open in IMG/M
3300009176\|Ga0105242_12164260	Not Available	601	Open in IMG/M
3300009177\|Ga0105248_10620730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1220	Open in IMG/M
3300009177\|Ga0105248_13225698	Not Available	519	Open in IMG/M
3300010043\|Ga0126380_10143200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1518	Open in IMG/M
3300010043\|Ga0126380_10685696	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300010043\|Ga0126380_10941081	Not Available	722	Open in IMG/M
3300010047\|Ga0126382_10612156	Not Available	898	Open in IMG/M
3300010048\|Ga0126373_11029836	Not Available	889	Open in IMG/M
3300010048\|Ga0126373_13331897	Not Available	500	Open in IMG/M
3300010359\|Ga0126376_11184990	Not Available	778	Open in IMG/M
3300010360\|Ga0126372_12573279	Not Available	560	Open in IMG/M
3300010361\|Ga0126378_12367543	Not Available	606	Open in IMG/M
3300010362\|Ga0126377_12116251	Not Available	639	Open in IMG/M
3300010366\|Ga0126379_11384228	Not Available	809	Open in IMG/M
3300010366\|Ga0126379_12180857	Not Available	655	Open in IMG/M
3300010366\|Ga0126379_13334226	Not Available	538	Open in IMG/M
3300010376\|Ga0126381_104160668	Not Available	561	Open in IMG/M
3300012958\|Ga0164299_11304219	Not Available	555	Open in IMG/M
3300012971\|Ga0126369_12658941	Not Available	585	Open in IMG/M
3300012971\|Ga0126369_12937011	Not Available	558	Open in IMG/M
3300013296\|Ga0157374_10707533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1021	Open in IMG/M
3300013296\|Ga0157374_12751602	Not Available	520	Open in IMG/M
3300016404\|Ga0182037_10583645	Not Available	947	Open in IMG/M
3300019361\|Ga0173482_10511660	Not Available	585	Open in IMG/M
3300020579\|Ga0210407_11302043	Not Available	543	Open in IMG/M
3300024232\|Ga0247664_1155641	Not Available	538	Open in IMG/M
3300025916\|Ga0207663_10579431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	880	Open in IMG/M
3300025922\|Ga0207646_10243310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1625	Open in IMG/M
3300026023\|Ga0207677_10133943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium canum	1886	Open in IMG/M
3300026121\|Ga0207683_12025381	Not Available	524	Open in IMG/M
3300031199\|Ga0307495_10248932	Not Available	511	Open in IMG/M
3300031226\|Ga0307497_10737810	Not Available	512	Open in IMG/M
3300031546\|Ga0318538_10234754	Not Available	983	Open in IMG/M
3300031564\|Ga0318573_10046375	Not Available	2105	Open in IMG/M
3300031572\|Ga0318515_10221163	Not Available	1015	Open in IMG/M
3300031572\|Ga0318515_10781930	Not Available	504	Open in IMG/M
3300031680\|Ga0318574_10944299	Not Available	505	Open in IMG/M
3300031681\|Ga0318572_10164465	Not Available	1286	Open in IMG/M
3300031720\|Ga0307469_10375784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1203	Open in IMG/M
3300031723\|Ga0318493_10594532	Not Available	616	Open in IMG/M
3300031724\|Ga0318500_10337403	Not Available	743	Open in IMG/M
3300031736\|Ga0318501_10362746	Not Available	779	Open in IMG/M
3300031744\|Ga0306918_10419307	Not Available	1044	Open in IMG/M
3300031744\|Ga0306918_11424733	Not Available	531	Open in IMG/M
3300031751\|Ga0318494_10301544	Not Available	924	Open in IMG/M
3300031764\|Ga0318535_10360785	Not Available	649	Open in IMG/M
3300031768\|Ga0318509_10584728	Not Available	622	Open in IMG/M
3300031769\|Ga0318526_10046970	Not Available	1635	Open in IMG/M
3300031770\|Ga0318521_10354885	Not Available	869	Open in IMG/M
3300031782\|Ga0318552_10060250	Not Available	1817	Open in IMG/M
3300031792\|Ga0318529_10227309	Not Available	867	Open in IMG/M
3300031798\|Ga0318523_10672519	Not Available	508	Open in IMG/M
3300031805\|Ga0318497_10186379	Not Available	1144	Open in IMG/M
3300031833\|Ga0310917_10241000	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300031879\|Ga0306919_11071991	Not Available	615	Open in IMG/M
3300031893\|Ga0318536_10587184	Not Available	557	Open in IMG/M
3300031897\|Ga0318520_10266521	Not Available	1025	Open in IMG/M
3300031910\|Ga0306923_10040488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	5088	Open in IMG/M
3300031959\|Ga0318530_10184006	Not Available	855	Open in IMG/M
3300032008\|Ga0318562_10285286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus chilensis	960	Open in IMG/M
3300032039\|Ga0318559_10379062	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300032044\|Ga0318558_10491656	Not Available	612	Open in IMG/M
3300032060\|Ga0318505_10246735	Not Available	840	Open in IMG/M
3300032068\|Ga0318553_10029690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2608	Open in IMG/M
3300032068\|Ga0318553_10628619	Not Available	562	Open in IMG/M
3300032089\|Ga0318525_10665104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300032174\|Ga0307470_10394161	Not Available	977	Open in IMG/M
3300032261\|Ga0306920_101564983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	939	Open in IMG/M
3300032783\|Ga0335079_11509649	Not Available	663	Open in IMG/M
3300032828\|Ga0335080_10058440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4266	Open in IMG/M
3300032828\|Ga0335080_11184090	Not Available	769	Open in IMG/M
3300032955\|Ga0335076_11268167	Not Available	621	Open in IMG/M
3300033289\|Ga0310914_10446128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1171	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.12%
Host-Associated	Host-Associated	11.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.14%
Plants	Host-Associated → Plants	11.88%
Aquatic	Environmental → Aquatic	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.97%
Sediment	Environmental → Aquatic → Sediment	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.34%
Loam	Environmental → Terrestrial → Soil → Loam	15.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.98%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1046915761	3300000956	Soil	MLTKDERKIADPGTGAPPADGSSSFRQILVPVSAPDESCPALAVAARICALGNGVLRLVHMR
Ga0062595_1001005651	3300004479	Soil	MLTIDERKIADPGTGAPSADGSSPFRRILVPVSAPDESRPALAVAARICALGNGVLRLVHVRICDP
Ga0070682_1006648611	3300005337	Corn Rhizosphere	MLTTDQREMTVPGGGVYCGDGEPSFRRILVPVRAPDQAYPALAVAARICAPGNGVLRLVHVRTCDPPLP
Ga0068868_1001589962	3300005338	Miscanthus Rhizosphere	MLTTDQREMTVPGGGVYRGDGEPSFRRILVPVRAPDQAYPALAVAARICAPGNGVLRLVHVRTCDPPLP
Ga0070675_1018470231	3300005354	Miscanthus Rhizosphere	MLTTDQREMTVPGGGVYRGDGEPSFRQILVPVRAPDQAYPALAVAARICALGNGVLRLVHVRICDPPLPIAG
Ga0008090_154173802	3300005363	Tropical Rainforest Soil	MLTVDEREIAGPGAGAHPTGGRSSFRRILVPVRSPGQAGPALAAAARLCALAGGMLRLVHVRTCDPPL
Ga0070667_1011225161	3300005367	Switchgrass Rhizosphere	MLTTDQREMTVPGGGVYRGDGDSWFRRILVPVRAPDEACPALAAAARICAMT
Ga0070709_111142202	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLTTEQREMAVPGGVYRADGGSRFRRILVPVRAPGQAYPAMAVAARICGVTGGVLRLVHVRTCDPPLPIAG
Ga0070709_113563251	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLTIDRREMTVPGGGVCRGDGDSGFRRILVPVREPGPAYPAMAVAARICG
Ga0070714_1003918201	3300005435	Agricultural Soil	MLTIDQREIARPGIGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLASGVLRLVHVRTCDP
Ga0070714_1011512001	3300005435	Agricultural Soil	MLTIDRREMTVPGGGVCRGDGDSGFRRILVPVREPGPAYPAMAVAARICGLTGGVLRLVHVRTCDPPLPI
Ga0070713_1001647572	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLTTEQREMAVPGGVYRADGGSRFRRILVPVRAPGQAYPAMAVAARICGVTG
Ga0070713_1009532011	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLTMDKREMTVPGDGVHRGDGDSRFRRILVPVRAPGQAYPAMAVAARICGVTGGVLRLVHVRTC
Ga0070707_1008192142	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLTTDQREMTVPGGGVYCGDGEPSFRRILVPVRAPDQAYPALAVAARICAPGN
Ga0070693_1007895671	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRTIDQREMTVPGGGVYRGDGDSWFRRILVPVRAPDEACPALAAAARICAMTGGVLRL
Ga0070702_1005346392	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MLTTDQREMTVPGGGVYCGDGEPSFRRILVPVRAPDQAYPALAVAA
Ga0066903_1019907982	3300005764	Tropical Forest Soil	VLLTTGQREMTVPGGGVDRGDGGSRFRRILVPVRTPGQAYPAMAVAARICGLTGGELRLVHVRTSDPPLPIVGRLYLET
Ga0066903_1028345021	3300005764	Tropical Forest Soil	MLTIDQGEIAVPGTGAHPGDARSSFRRILVPVRSPGESAPALAAAARICGLANGVLRLVHVRTCDPPQRSAARFYRETTGQATA
Ga0070717_103230391	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLTTEQREMAVPGGVYRADGGSRFRRILVPVRAPGQAYPAMAVAARICGVTGGVLRLVHVRTCDP
Ga0070717_121356942	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLTLDQRELAVPGGGVYRGDGGSWFRRILVPVRAPGQAYPAMA
Ga0075017_1007511043	3300006059	Watersheds	METIEIDQRAIAVPGTGAPWIGGRSTFRRILVPVRSPGQSRQTLVVAARICGLANGALRLVHVRACDPPLRRAA
Ga0075015_1005406521	3300006102	Watersheds	MLTIDEREITGPGTGAHPEDGASSFRRILVPARAPDESCPPLAVAARLCGITGGVLCLVHVQTRGTGERRQL
Ga0079221_108857282	3300006804	Agricultural Soil	MLTTEQREMAVPGGVCRADGGSRFRRILVPVRAPGQAYPAMAVAARICGVT
Ga0079221_112024311	3300006804	Agricultural Soil	MLTIDERKIADPGTGAPPADGNPSFRRILVPVSAPDQSCPALAVAARICALGNGVLRLVHVRTCDPPLPVAGR
Ga0105251_104928561	3300009011	Switchgrass Rhizosphere	MLTTDQREMTVPGGGVYCGDGEPSFRRILVPVRAPDQAYPALAVAARICAPGNGVLRLVHVRTCDPPLPIAGRL
Ga0066709_1008468481	3300009137	Grasslands Soil	MQLPREVLVMLTIDQREIAGPGTGAQLGDGRSSFRRILVPVRSPGESAPALAVAARICGLASGVLRLVHVRTCDPPQRSAA
Ga0105241_124064401	3300009174	Corn Rhizosphere	MRTIDQREMTVPGGGVYRGDGDSWFRRILVPVRAPDEACPALAAAARICAMTGG
Ga0105242_121642601	3300009176	Miscanthus Rhizosphere	MRTIDQREMTVPGGGVYRGDGEPSFRRILVPVRAPDEACPALAAAARICAMTGGVLRLVHVRTCDPPLPI
Ga0105248_106207302	3300009177	Switchgrass Rhizosphere	MLTTDQREMTVPGGGVYCGDGEPSFRRILVPVRAPGQAYPAMAVAARICGTTGVLRLV
Ga0105248_132256981	3300009177	Switchgrass Rhizosphere	MRTIDQREMTVPGGGVYRGDGDSWFRRILVPVRAPGQAYPAMAVAARICGTTGVLRLV
Ga0126380_101432001	3300010043	Tropical Forest Soil	MLTMDQREMTVPGGGVCDGTGDSWFRRILVPVRAPDESCPALAAAAR
Ga0126380_106856962	3300010043	Tropical Forest Soil	MLTIDQREMTVPGGGVYRGDGGSWFRRILVPVRAPGQAYPALAMAARICGMTGGMLRLVHVRTCDPPLPIVGRIYLA
Ga0126380_109410812	3300010043	Tropical Forest Soil	MLTIDQREMTGPGTGTHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGVLRLVHVRIYDPPM
Ga0126382_106121561	3300010047	Tropical Forest Soil	MLTIDQREITGPGTHPGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGALRLVHVR
Ga0126373_110298361	3300010048	Tropical Forest Soil	MLTIDQREMTVSGGGVYRGDGDSWFRRILVPVRAPDESSSALAVAARICALGNGALRLVHVRTCDPPLPIA
Ga0126373_133318971	3300010048	Tropical Forest Soil	MLTIDQREIAVPGTGTHLGDGRSSFRRILVPVRSPGESGPALAVAARICGMTGGSLRLVHVRAYD
Ga0126376_111849901	3300010359	Tropical Forest Soil	MLTIDQREMTVPGGGVYRGDGGSWFRRILVPVRAPGQAYPALAMAARICGMTGGMLRLIHVRTCDPPLPIVGRI*
Ga0126372_125732791	3300010360	Tropical Forest Soil	MLTIDQREMTVPGGGVYRGDGGSWFRRILVPVRAPDESCPALAVAARICALGNGVLRLVHVRTCDPPLPIAG
Ga0126378_123675431	3300010361	Tropical Forest Soil	MLTIDQREITGPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGVLRLVHVR
Ga0126377_121162511	3300010362	Tropical Forest Soil	MLTTDQREITVPGGGVYRGDGDSRFRRILVPVRAPGQAYPATAMAARICGIT
Ga0126379_113842281	3300010366	Tropical Forest Soil	MLTIDQREIANPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGVLRLVHVRIYDPPMRASSRFYPETAA
Ga0126379_121808571	3300010366	Tropical Forest Soil	MLTTDQREMTVPAAGVHRGDGDSRFRRILVPVRAPEEAYLATALAARICALT
Ga0126379_133342261	3300010366	Tropical Forest Soil	MLTIDQREMTVSGGGVYRGDGDSWFRRILVPVRAPDESSSALAVAARICALGHGALRLVHVRTYDPP
Ga0126381_1041606681	3300010376	Tropical Forest Soil	MLTIDQREVAVPGTGAHLGDGRSSFRRILVPVRSPGESAPALVAAARICGMANGVLRLVHVRTCDPPQRSAARFY
Ga0164299_113042192	3300012958	Soil	MLTTDQREMIVPGGGVYRGDGEPSFRRILVPVRAPDQA
Ga0126369_126589411	3300012971	Tropical Forest Soil	MLTIDQREVAVPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGMANGVLRLVHVRTCDPPQRS
Ga0126369_129370111	3300012971	Tropical Forest Soil	MLTIDQREIAGPGTVAHMGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGVLRLIHVRIYDPPMRASSRF
Ga0157374_107075331	3300013296	Miscanthus Rhizosphere	MLTTDQREMTVPGGGVYRGDGEPSFRRILVPVRAPDQAYPALAMAARICGM
Ga0157374_127516021	3300013296	Miscanthus Rhizosphere	MQLPREVLVMLTIDQREIARPGTGAHLGDGRSSFRRLLVPVRSPGESVPALAAAARICGLASGVLRLVHVR
Ga0182037_105836452	3300016404	Soil	MLTIDQREIAGPATGAHSSDGRSSFRRLLVPVRSPAQAGPALAVAARLCAQAGGALRLVHVRTCDPPLRSAA
Ga0173482_105116601	3300019361	Soil	MLTIDQRGIAVPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLASGVLRLVHVRTCDPPRR
Ga0210407_113020431	3300020579	Soil	MLTIDQRERTVPGGGVYRGDGDSWFRRILVPVRAPGQAYPAMAVAARICGITGGVL
Ga0247664_11556411	3300024232	Soil	MLTTDQREMTVPGGGVYRGDGESSFRRILVPVRAPDQAYPALAVAARICAPGNGVLRLVHVRTCDPPLPIAGRLYLE
Ga0207663_105794312	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLTTEQREMAVPGGVYRADGGSRFRRILVPVRAPGQAYPAMAVAARICGVTGGVLRLVHVRTCD
Ga0207646_102433101	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLTTDQREMTVPGGGVYCGDGEPSFRRILVPVRAPDQAYPALAV
Ga0207677_101339432	3300026023	Miscanthus Rhizosphere	MLTTDQREMTVPGGGVYRGDGEPSFRRILVPVRAPDQAYPALAVAARICAPGNGVLRLV
Ga0207683_120253811	3300026121	Miscanthus Rhizosphere	MLTIDQREIARPGIGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLASGVLRLVHVRTCDPLQ
Ga0307495_102489321	3300031199	Soil	MLTLDQREMTVSGGGEYRGDGDSWFRRILVPVRSPDQAYPALA
Ga0307497_107378101	3300031226	Soil	MLTMDEREMTVPGGGAYRGDGGSWFRRILVPVRAPGQAYAAMAVAARICGVTGGELRLVHVRTCDPPLPIVGRVYLETP
Ga0318538_102347541	3300031546	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVRTCDPPL
Ga0318573_100463752	3300031564	Soil	MLTIDEREIAGPGTGAHPTGGRSPFRRILVPVRSPGQAGPALAVAARLCALAGGVLRLVHVRTCDPPLRAPARFYPETLGE
Ga0318515_102211631	3300031572	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVRTCDPPLPIAG
Ga0318515_107819302	3300031572	Soil	MLTIDQRDMTVPGKGAYRGDGDSRFRRILVPVRAPGQAYPALAVAARICGMTGGVLRLIH
Ga0318574_109442992	3300031680	Soil	MLTIDQRDMTVPGKGAYRGDGDSRFRRILVPVRAPGQ
Ga0318572_101644652	3300031681	Soil	MLTIDEREIAGPGTGAHPTGGRSSFRRILVPVRSPGQAGPALAAAARLCALAGGMLRLVHVRTCDPPLRAAARFYP
Ga0307469_103757841	3300031720	Hardwood Forest Soil	MLTTDQREMTVPGGGVYCGDGEPSFRRILVPVRAPDQAYPALAVAARICAPGNGVLRLVH
Ga0318493_105945321	3300031723	Soil	MLTIDEREIAGPGTGAHPTGGRSSFRRILVPVRSPGQAGPALAVAARLCALGGGMLRLVHVRT
Ga0318500_103374031	3300031724	Soil	MLTIDQREIAGPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGVLR
Ga0318501_103627461	3300031736	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVRTCDPPLPIAGR
Ga0306918_104193071	3300031744	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVRTCDPP
Ga0306918_114247331	3300031744	Soil	MLTIDQREIAGPATGAHSSDGRSSFRRLLVPVRSPAQAGPALAVAARLCAQAGGALRLVHVRTCDPPLRSAARFYR
Ga0318494_103015442	3300031751	Soil	MQTIDQREMTVPGGDVYRGDIDSRFRRILVPVRTPGQAYPA
Ga0318535_103607852	3300031764	Soil	MLTIDEREIAGPGTGAHPTGGRSSFRRILVPVHSPGQAGPALAVAARLCALAGGMLRLVHVRTCDPPLRAPARF
Ga0318509_105847282	3300031768	Soil	MLTIDQREIAGPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLANGVLRLVH
Ga0318526_100469701	3300031769	Soil	MLTIDEREIAGPGTGAHPTGGRSSFRRILVPVRSPGQAGPALAAAARLCALAGGMLRLVHVRTCDPPLRAAARFY
Ga0318521_103548851	3300031770	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVRTCDPPLPIAGRFYLE
Ga0318552_100602503	3300031782	Soil	MLTIDEREIAGPGTGAHPTGGRSPFRRILVPVRSPGQAGPALAVAARLCALAGGMLRLVHVRTCDPPLRAPARFYPETLGEAAAV
Ga0318529_102273091	3300031792	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVH
Ga0318523_106725191	3300031798	Soil	MLTIDELEIAAPGTGAHAGDGRSPFRRILVPVHSPGESGPALAVAARICTLASGVLRLVHVRTC
Ga0318497_101863793	3300031805	Soil	MLTIDQREIAGPATGAHSSDGRSSFRRLLVPVRSPAQAGPALAVAARLCAQAGGALRLVH
Ga0310917_102410005	3300031833	Soil	MLTIDELGKAGSGTSAHPGDGSSSFRRILVPVRSPGESGPALAMAGRICAMTGGVLRLVHVRTCDP
Ga0306919_110719911	3300031879	Soil	MLTIDQREIAGPGTGAHLGDGRSSFRRILVPVRSPAESAPALAAAARICGLANGVLRLV
Ga0318536_105871841	3300031893	Soil	MLTIDEREIAGPGTGAHPTGGRSPFRRILVPVRSPGQAGPALAVAARLCALAGGVLRLVHVRTCDPPLR
Ga0318520_102665211	3300031897	Soil	MLTIDEREIAGPGTGAHPTGGRSSFRRILVPVRSPGQAGPALAAAARLCALAGGMLRLVHVRTCDPPLRAAARFYPE
Ga0318520_108587441	3300031897	Soil	MLTIDQREIAGPATGAHSSDGRSSFRRLLVPVRSPAQAGPALAVAARLCAQAGGAGPAW
Ga0306923_100404885	3300031910	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVRTCDPPLPIAGRF
Ga0318530_101840061	3300031959	Soil	MLTIDQREIAVPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGETNGVLR
Ga0318562_102852861	3300032008	Soil	MLTIDQRDMTVPGKGAYRGDGDSRFRRILVPVRAPGQAYPALAVAARICGMTGGVLRLI
Ga0318559_103790621	3300032039	Soil	MLTIDELGKAGSGTSAHPGDGSSSFRRILVPVRSPGESGPALAMAGRICAMTGGVLRLVHVRTCDPPLPIAGRFYME
Ga0318558_104916561	3300032044	Soil	MLTIDEREIAGPGTGAHPTGGRSSFRRILVPVRSPGQAGPALAAAARLCALAGGMLRLVH
Ga0318505_102467351	3300032060	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVRTCD
Ga0318553_100296903	3300032068	Soil	MLNIDQLEIAGPGTSAHAGDGRSSFRRILVPVRWPGESGPALAVAARVCGMTGGALRLVHVR
Ga0318553_106286191	3300032068	Soil	MLSIDQREIAGPGTDAHLGDGRSSFRRILVPVRSPGESAPALAVAARLCGTASGVLRLVHVRTCDPPLRSPGRFYRE
Ga0318525_106651041	3300032089	Soil	MLTIDELGKAGSGTSAHPGDGSSSFRRILVPVRSPGESGPALAMAGRICAMTGGVLRLVHVRTCDPPLPIAGRFYMETP
Ga0307470_103941612	3300032174	Hardwood Forest Soil	MLTIDQREIARPGTGAHLGDGRSSFRRILVPVRSPGESAPALAAAARICGLASGVLRLVHVRTCDPPQRTAARFY
Ga0306920_1015649833	3300032261	Soil	MVTIDDREIAVLGTGAPPIDGGSSFRRILVPVRSPGESSPALAVAARICPITNGVLRLVHVRTCDPPLRSPA
Ga0335079_115096491	3300032783	Soil	MLAMDQREITGPGTGTHLGDGRSSFRRILVPVRSPGESAPALAAARICGLASGVLRLVHVRTCDPPLRSAARFYRE
Ga0335080_100584401	3300032828	Soil	MLTIDQREMTVPGGGVYRGDGDSWFRRILVPVRAP
Ga0335080_111840901	3300032828	Soil	MLTIDQREMTVPGGGVHRADGDSWFRRILVPVRAPDESCSALAVAARICGMTGGVLRLVHVR
Ga0335076_112681672	3300032955	Soil	MLTIDQREMTVPGGGVYRGDGGSWFRRILVPVRAPGGAYPALAVAARICGMTGGVLRLVHVRTCDPP
Ga0310914_104461283	3300033289	Soil	MLMIDELEIAGPGAGAHSSNGRSPLRRILVPVRSPGESGSALAVAARICTLASGVLCLVHVRTCDPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102829

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences