Metagenome / Metatranscriptome Family F102876

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102876
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	68 residues
Representative Sequence	MKKMFAILAVALLSPYAVSRADAEGPLHWTARHVRNAAVETGDTISNVARTAGRTIYHRTRPIREAVE
Number of Associated Samples	79
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	13.86 %
% of genes near scaffold ends (potentially truncated)	21.78 %
% of genes from short scaffolds (< 2000 bps)	75.25 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.446 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (17.822 % of family members)
Environment Ontology (ENVO)	Unclassified (22.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.485 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 64.58% β-sheet: 0.00% Coil/Unstructured: 35.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03466	LysR_substrate	13.86
PF07332	Phage_holin_3_6	3.96
PF00072	Response_reg	0.99
PF13088	BNR_2	0.99
PF00120	Gln-synt_C	0.99
PF00201	UDPGT	0.99
PF00583	Acetyltransf_1	0.99
PF02525	Flavodoxin_2	0.99
PF00903	Glyoxalase	0.99
PF13387	DUF4105	0.99
PF01156	IU_nuc_hydro	0.99
PF07992	Pyr_redox_2	0.99
PF02583	Trns_repr_metal	0.99
PF01471	PG_binding_1	0.99
PF00005	ABC_tran	0.99
PF00128	Alpha-amylase	0.99
PF00248	Aldo_ket_red	0.99
PF13631	Cytochrom_B_N_2	0.99
PF13950	Obsolete Pfam Family	0.99
PF13884	Peptidase_S74	0.99
PF00691	OmpA	0.99
PF02779	Transket_pyr	0.99
PF13508	Acetyltransf_7	0.99
PF02653	BPD_transp_2	0.99
PF16657	Malt_amylase_C	0.99
PF03734	YkuD	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.98
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.99
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.99
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.99
COG1937	DNA-binding transcriptional regulator, FrmR family	Transcription [K]	0.99
COG1957	Inosine-uridine nucleoside N-ribohydrolase	Nucleotide transport and metabolism [F]	0.99
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.99
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
All Organisms	root	All Organisms	44.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
cellular organisms	root	All Organisms → cellular organisms	44.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	17.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	13.86 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.99 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	13.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.99 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.99 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.99 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.99 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.96 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.99 %
unclassified Candidatus Poribacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria	0.99 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.99 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples	0.99 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.96 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.99 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.99 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.99 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.99 %
Chroococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	0.99 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.96 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.99 %
Oleiharenicola	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Oleiharenicola	0.99 %
Microcystaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae	0.99 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.99 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.99 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.96 %
Oleiharenicola lentus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Oleiharenicola → Oleiharenicola lentus	0.99 %
Microcystis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis	0.99 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.99 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.99 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.99 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.96 %
Microcystis aeruginosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa	0.99 %
Oleiharenicola lentus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Oleiharenicola → Oleiharenicola lentus	0.99 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.99 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.99 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.99 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.96 %
Microcystis aeruginosa Ma_QC_Ca_00000000_S207	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa → Microcystis aeruginosa Ma_QC_Ca_00000000_S207	0.99 %
Oleiharenicola lentus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Oleiharenicola → Oleiharenicola lentus	0.99 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.99 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.99 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.99 %
uncultured Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	0.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17354661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2624	Open in IMG/M
2170459007\|GKWS7RC02JJ2QL	Not Available	500	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101437643	Not Available	577	Open in IMG/M
3300001867\|JGI12627J18819_10025082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2451	Open in IMG/M
3300002245\|JGIcombinedJ26739_100027219	All Organisms → cellular organisms → Bacteria	5010	Open in IMG/M
3300002245\|JGIcombinedJ26739_100648859	Not Available	933	Open in IMG/M
3300002886\|JGI25612J43240_1084594	Not Available	504	Open in IMG/M
3300002906\|JGI25614J43888_10057622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1145	Open in IMG/M
3300002906\|JGI25614J43888_10085987	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	862	Open in IMG/M
3300002917\|JGI25616J43925_10192365	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	793	Open in IMG/M
3300003219\|JGI26341J46601_10016033	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300003505\|JGIcombinedJ51221_10260176	Not Available	705	Open in IMG/M
3300005186\|Ga0066676_10617097	Not Available	735	Open in IMG/M
3300005435\|Ga0070714_101752118	Not Available	607	Open in IMG/M
3300005445\|Ga0070708_100120086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2424	Open in IMG/M
3300005445\|Ga0070708_100706674	Not Available	949	Open in IMG/M
3300005445\|Ga0070708_101349858	Not Available	665	Open in IMG/M
3300005467\|Ga0070706_100014328	All Organisms → cellular organisms → Bacteria	7326	Open in IMG/M
3300005467\|Ga0070706_100680538	Not Available	954	Open in IMG/M
3300005468\|Ga0070707_100059456	All Organisms → cellular organisms → Bacteria	3666	Open in IMG/M
3300005468\|Ga0070707_100603930	Not Available	1060	Open in IMG/M
3300005471\|Ga0070698_100036411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5083	Open in IMG/M
3300005471\|Ga0070698_101473007	Not Available	632	Open in IMG/M
3300005518\|Ga0070699_100444121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1176	Open in IMG/M
3300005536\|Ga0070697_100140549	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2030	Open in IMG/M
3300005764\|Ga0066903_106502944	Not Available	609	Open in IMG/M
3300005764\|Ga0066903_108019438	Not Available	542	Open in IMG/M
3300006028\|Ga0070717_10045811	All Organisms → cellular organisms → Bacteria	3577	Open in IMG/M
3300006800\|Ga0066660_10355308	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1192	Open in IMG/M
3300006893\|Ga0073928_10386946	Not Available	1026	Open in IMG/M
3300006893\|Ga0073928_10719174	Not Available	695	Open in IMG/M
3300010048\|Ga0126373_12265104	Not Available	604	Open in IMG/M
3300010049\|Ga0123356_11627692	Not Available	800	Open in IMG/M
3300010154\|Ga0127503_10633073	Not Available	597	Open in IMG/M
3300010341\|Ga0074045_10180964	Not Available	1419	Open in IMG/M
3300010361\|Ga0126378_13088039	Not Available	530	Open in IMG/M
3300010376\|Ga0126381_101626718	Not Available	933	Open in IMG/M
3300010376\|Ga0126381_103774637	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300011120\|Ga0150983_13435961	Not Available	504	Open in IMG/M
3300012089\|Ga0153924_1046707	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300012177\|Ga0153943_1097402	Not Available	626	Open in IMG/M
3300012202\|Ga0137363_10029233	All Organisms → cellular organisms → Bacteria	3790	Open in IMG/M
3300012205\|Ga0137362_11139639	Not Available	662	Open in IMG/M
3300012362\|Ga0137361_10978268	Not Available	765	Open in IMG/M
3300012683\|Ga0137398_10633788	Not Available	740	Open in IMG/M
3300014164\|Ga0181532_10599422	Not Available	598	Open in IMG/M
3300014199\|Ga0181535_10082338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa → Microcystis aeruginosa Ma_QC_Ca_00000000_S207	2107	Open in IMG/M
3300015241\|Ga0137418_10522530	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300015264\|Ga0137403_10019187	All Organisms → cellular organisms → Bacteria	7362	Open in IMG/M
3300016294\|Ga0182041_11709579	Not Available	582	Open in IMG/M
3300016319\|Ga0182033_10009741	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	5358	Open in IMG/M
3300016341\|Ga0182035_12179975	Not Available	502	Open in IMG/M
3300016404\|Ga0182037_11933587	Not Available	529	Open in IMG/M
3300018431\|Ga0066655_10647421	Not Available	714	Open in IMG/M
3300020140\|Ga0179590_1195128	Not Available	555	Open in IMG/M
3300020199\|Ga0179592_10426807	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	575	Open in IMG/M
3300020581\|Ga0210399_10095584	All Organisms → cellular organisms → Bacteria	2426	Open in IMG/M
3300021046\|Ga0215015_10000481	Not Available	673	Open in IMG/M
3300021088\|Ga0210404_10624795	Not Available	613	Open in IMG/M
3300021168\|Ga0210406_10024408	All Organisms → cellular organisms → Bacteria	5566	Open in IMG/M
3300021171\|Ga0210405_10035660	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → environmental samples → uncultured Phycisphaerae bacterium	3970	Open in IMG/M
3300021171\|Ga0210405_10244978	Not Available	1419	Open in IMG/M
3300021171\|Ga0210405_10560770	Not Available	892	Open in IMG/M
3300021178\|Ga0210408_10005966	Not Available	10591	Open in IMG/M
3300022557\|Ga0212123_10126432	Not Available	2021	Open in IMG/M
3300022557\|Ga0212123_10658979	Not Available	651	Open in IMG/M
3300023046\|Ga0233356_1016540	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	840	Open in IMG/M
3300025910\|Ga0207684_10012348	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7433	Open in IMG/M
3300025910\|Ga0207684_10063720	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Oleiharenicola → Oleiharenicola lentus	3129	Open in IMG/M
3300025910\|Ga0207684_10801761	Not Available	796	Open in IMG/M
3300025922\|Ga0207646_10245014	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300025922\|Ga0207646_11187333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300025922\|Ga0207646_11720886	Not Available	538	Open in IMG/M
3300026304\|Ga0209240_1047966	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1611	Open in IMG/M
3300026551\|Ga0209648_10620049	Not Available	594	Open in IMG/M
3300027071\|Ga0209214_1042263	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	612	Open in IMG/M
3300027537\|Ga0209419_1012293	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300027812\|Ga0209656_10034802	All Organisms → cellular organisms → Bacteria	2954	Open in IMG/M
3300027889\|Ga0209380_10589528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	644	Open in IMG/M
3300028047\|Ga0209526_10052195	Not Available	2879	Open in IMG/M
3300031231\|Ga0170824_112585135	Not Available	594	Open in IMG/M
3300031546\|Ga0318538_10500147	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	659	Open in IMG/M
3300031546\|Ga0318538_10612416	Not Available	591	Open in IMG/M
3300031573\|Ga0310915_10110504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1868	Open in IMG/M
3300031590\|Ga0307483_1040893	Not Available	510	Open in IMG/M
3300031718\|Ga0307474_11352185	Not Available	562	Open in IMG/M
3300031744\|Ga0306918_11216838	Not Available	581	Open in IMG/M
3300031753\|Ga0307477_10025117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4068	Open in IMG/M
3300031753\|Ga0307477_10200022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1390	Open in IMG/M
3300031879\|Ga0306919_10126581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1836	Open in IMG/M
3300031879\|Ga0306919_10272747	Not Available	1278	Open in IMG/M
3300031890\|Ga0306925_10727508	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1036	Open in IMG/M
3300031910\|Ga0306923_11724976	Not Available	646	Open in IMG/M
3300031942\|Ga0310916_10045349	All Organisms → cellular organisms → Bacteria	3332	Open in IMG/M
3300031954\|Ga0306926_10504411	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1486	Open in IMG/M
3300031954\|Ga0306926_12385965	Not Available	583	Open in IMG/M
3300031962\|Ga0307479_10863712	Not Available	878	Open in IMG/M
3300031962\|Ga0307479_11886754	Not Available	548	Open in IMG/M
3300032001\|Ga0306922_10849332	Not Available	951	Open in IMG/M
3300032180\|Ga0307471_101809234	Not Available	762	Open in IMG/M
3300033289\|Ga0310914_10995553	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.03%
Host-Associated	Host-Associated	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.12%
Aquatic	Environmental → Aquatic	8.91%
Fungi	Host-Associated → Fungi	1.98%
Arthropoda	Host-Associated → Arthropoda	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.12%
Freshwater	Environmental → Aquatic → Freshwater	4.95%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.96%
Mycelium	Host-Associated → Fungi → Mycelium	1.98%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.43%
Loam	Environmental → Terrestrial → Soil → Loam	29.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	17.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.98%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03206310	2088090014	Soil	MKRMCAILAVVLFSPYAVPRADAEGPLRWTARHARDAAVDTGNTISNVARTAGRTIYHRTRPIREALE
L02_01949420	2170459007	Grass Soil	MKKMFAILAVALLSPYAVSRADAEGPLHWTARHVRNAAVETGDTISNVARTAGRTIYHRTRPIREAVE
INPhiseqgaiiFebDRAFT_1014376431	3300000364	Soil	MKKMCVILAVGFLSPFAMSKANAEGPLHWTARHVKNAAVETGDTISNVARTAGRTIYPRTRPIREALE*
JGI12627J18819_100250823	3300001867	Forest Soil	MCVILAVALLSPYAASRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE*
JGIcombinedJ26739_1000272194	3300002245	Forest Soil	MKKMCAIVAVVLLSPYAVSRADAEGPLHWTARHVKNAAVETGDTLSNVARTAGRTIYHRTRPIREAFE*
JGIcombinedJ26739_1006488591	3300002245	Forest Soil	MKKMCAIVAVALLSPYAVGSADAEGPVHWTARHVRKAALETGDTMSNVARTAGRTIYHRTRPIREAVE*
JGI25612J43240_10845941	3300002886	Grasslands Soil	SIYILTSMKKMCAILAVALLSPYAVSKADAEGPLHWTARHVTKAAVETGDTLSNVARTAGRTIYHRTQPVREAFE*
JGI25614J43888_100576222	3300002906	Grasslands Soil	MKKMCAILAVALLSPYAASRADDEGPLHWTARHVTKAAVETGDTISNVARTAGRTINHRTKPIREAFE*
JGI25614J43888_100859871	3300002906	Grasslands Soil	MCAILAVALLSPYAVSRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTRPIREALE*
JGI25616J43925_101923652	3300002917	Grasslands Soil	MKKMCAILAVALLSPYAVSKADAEGPLHWTARHVTKAAVETGDTLSNVARTAGRTIYHRTQPVREAFE*
JGI26341J46601_100160333	3300003219	Bog Forest Soil	MKKICAILAVALLAPYSVSRADAEGPLHWTARHVRNAAVETGDTISNVARTAGRTIYHRTRPIREAVE*
JGIcombinedJ51221_102601761	3300003505	Forest Soil	MKKMGAILAVALLSPYAVSRADAEGPLHWTARXVRNAAVETGDTISNVARTTGRTIYHRTRPIREAVE*
Ga0066676_106170972	3300005186	Soil	MKKIGAIVVAALLSPYTVGSADAAGPLQEGPLHWTARHVRQAAVETGDTLSNVARMTEKTIHHGTRAIRQTLR*
Ga0070714_1017521181	3300005435	Agricultural Soil	MNKVVHERVKTYMKKMCAILAAALLSPYAVGSANAAGPLQEGPLHWTARHVRTAAVETKDTLSNVARTTGRTLHHGTRAVRHALSS*
Ga0070708_1001200862	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MCAILAVALLSPYAVYRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTRPVREALE*
Ga0070708_1007066741	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MYVILAVALLSPYAASRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE*
Ga0070708_1013498581	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMYAILAVALLSPYAMSRADAEGPLHWTARHLRNAAVDIGDTISNVARTAGRTIYHRTRPIREAVE*
Ga0070706_1000143282	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKKIGAIIAAALLWPYAVGSADAAGPLQEGPLHWTARHVRQAAVETGDTLSNVARTTGKTIHHGTRTIRQAFR*
Ga0070706_1006805381	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMCVILAVALLSPYAASRAHAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE*
Ga0070707_1000594562	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MCAILAVALLSPYAVYRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTRPIREALE*
Ga0070707_1006039301	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMYAILAVALLSPYAMSRADAEGQLHWTARHLRNAAVDTGDTISNVARTAGRTIYHRTRPIREAVD*
Ga0070698_1000364111	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMYAILAVALLSPYAMSRADAEGPLHWTARHLRNAAVDTGDTISNVARTAGRTIYHRTRPIREAVE*
Ga0070698_1014730071	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMCAILAAALLSPYAVGSANAAGPLQEGPLHWTARHVRTAAVETKDTLSNVARTTGRTLHHG
Ga0070699_1004441212	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMYVILAVALLSPYAASRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE*
Ga0070697_1001405491	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMCVILAVALLSPYAASRANAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPVREAFE*
Ga0066903_1065029441	3300005764	Tropical Forest Soil	KKMCAILAIALLSPYAVYRAEAEGPLHWTARHVKKAAVDTGDTIHNVARTAGRTIYHRTRPVREAFE*
Ga0066903_1080194381	3300005764	Tropical Forest Soil	MKKVYAILAVALLSATAVSRADEGPLHWAARHARNAVVGTGETAANVARTAGRTIYHRTRPIREAFR*
Ga0070717_100458114	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNKVVHERVKTYMKKMCAILATALLSPYAVGSANAAGPLQEGPLHWTARHVRTAAVETKDTLSNVARTTGRTLHHGTRAVRHALSS*
Ga0066660_103553081	3300006800	Soil	MKKIGAIVVAALLSPYAVGSANAEGPLHWTARHVSGAVVETGNTLSNVARTAGRTIH
Ga0073928_103869462	3300006893	Iron-Sulfur Acid Spring	MKKMCAILAVALLSPYALSRADAEGPLHWTARHVRNAAVETGDTISNVARTAGRTIYHRTRPIREAV
Ga0073928_107191741	3300006893	Iron-Sulfur Acid Spring	MKKMCAIVAIALLSPYAVCSADAEGPVHWTARHVRKAALETGDTMSNVARTAGRTIYHRTRPIREAVE*
Ga0126373_122651041	3300010048	Tropical Forest Soil	MKKMCAILAVALVSPYVVTKADAEGPLHWTARHVRKAAVDTGDTLSNVARTAGRTIDHRTRPIREAVE*
Ga0123356_116276921	3300010049	Termite Gut	MKKVCAIVAVTLMSPFVVSKIDAGPISEGPLHWTARHVRNAAVTTGETLSDVGRTAARAIDRGADHVRRAFE*
Ga0127503_106330731	3300010154	Soil	MKKICTILAVALLSPYAVYRAEAEGPLHWTARHVKKAAVDTGDTIHNVARTAGRTIYHRTRPIREAFE*
Ga0074045_101809641	3300010341	Bog Forest Soil	MKKMYVILAVGLLSTYAVSRADAEGPLHWTARHVKKEAVETGDTISNVARTAGRTIDHRTRPIREAFE*
Ga0126378_130880391	3300010361	Tropical Forest Soil	KKLCATLAVALLSPYAVSRADAEGSVHWAARHVRNAAVETGDTLSNVARTAGRTIYHRTRPIREAFE*
Ga0126381_1016267182	3300010376	Tropical Forest Soil	KKLCAILAVALLSPYAVSRADAEGPVHWAARHVRNAAVETGDTLSNVARTAGRTIYHRTRPIREAFE*
Ga0126381_1037746371	3300010376	Tropical Forest Soil	MKKVYAILAVALLSATAVSRADEGPLHWAVRHVRNAVVGTGETAANVARTAGRTIYHRTRPVREAFR*
Ga0150983_134359612	3300011120	Forest Soil	KKMCAILAVALLSPCVEYRVHAEGPLHWTARHVKKAAVETVDTASNVARTAERTINHRTRPIREAVE*
Ga0153924_10467072	3300012089	Attine Ant Fungus Gardens	MKKMYAVLAIALLSPYAVYRADAEGPLHWAARHVRNAAVETGDTISNVAKTAGRTIYHRTRPVREAVE*
Ga0153943_10974021	3300012177	Attine Ant Fungus Gardens	MKKLCTILASAVALLSPYAVSRADAEGPVHWAARHVRDAAVDTGDTISNVAKTAGRTIYHRTRPLRKAVE*
Ga0137363_100292333	3300012202	Vadose Zone Soil	MKKMYAILAVALLSPYAMSRADAEGPLHWTARHLRNAAVDTGDTISNVARTAGRTIYHRTRPIGEAVE*
Ga0137362_111396391	3300012205	Vadose Zone Soil	MKKMCAILAVALLSPYAASRADSEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTRPIREALE*
Ga0137361_109782681	3300012362	Vadose Zone Soil	MKKMCAILAVALLSPYAASRADSEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE*
Ga0137398_106337881	3300012683	Vadose Zone Soil	MKKMCAILAVALLSPYAVSRANAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTRPIREALE*
Ga0181532_105994221	3300014164	Bog	MKKMYAILAVGLMAPYAVSNADAEGPINWTARHVTKAAVEATNTLSNVARTAGRTIDHRTRAIRKAVE*
Ga0181535_100823381	3300014199	Bog	MKKMYAILAVGLMAPYAVSNAHAEGPINWTARHVTKAAVEATNTLSNVARTAGRTIDHRTRAIRKAVE*
Ga0137418_105225301	3300015241	Vadose Zone Soil	MQPKESNKILRKRVKIYMKKMSAIAAAALLSLYAGGSADAEGPLHWTARHVRTAAVETKDTLSNVARTTGRTLHHGTRAVRHALSS*
Ga0137403_100191872	3300015264	Vadose Zone Soil	MNKVVHERVKTYMKKMCVILAAALLSPYAVGSANAAGPLQEGPLHWTARHVRTAAVETKDTLSNVARTTGRTLHHGTRAVRHALSS*
Ga0182041_117095791	3300016294	Soil	MCAILAVALLSPYAVYRAEAEGPLHWTAIHVKNAAVDTGDTIHNVARTAGRTIYHRTRPVREAFE
Ga0182033_100097417	3300016319	Soil	MLAVALLAPYTASKADAEGPLHWTARHIKKAAVETGDTLSNVARTAGRTIHHRTRPTREAVE
Ga0182035_121799752	3300016341	Soil	MCAILAVALLSPYAMPKAEAEGPLHWTARHVKKAAVETGDTIHNVARTAGRTIYHRTRPTRE
Ga0182037_119335871	3300016404	Soil	MCAILAVALLSPYAVYRAEAEGPLHWTARHVKNAAVDTGDTIHNVARTAGRTIYHRTRRVREAFE
Ga0066655_106474212	3300018431	Grasslands Soil	MKKIGAIVVAALLSPYMVGNADAAGPLQEGPLHWTARHVRQAAVETGDTLSNVARMTEKTIHHGTRAIRQTLR
Ga0179590_11951281	3300020140	Vadose Zone Soil	MNKVVHERVKTYMKKMCAILAAALLSPYAVGSANAAGPLQEGPLHWTARHVRTAAVETKDTLSNVARTTGRTLHHGTRAVRHALSS
Ga0179592_104268071	3300020199	Vadose Zone Soil	MCAILAVALLSPYAVSKADAEGPLHWTARHVTKAAVETGDTLSNVARTAGRTIYHRTQP
Ga0210399_100955844	3300020581	Soil	MKKMGAILAVALLSPYAVSRADAEGPLHWTARHVRNAAVETGDTISNVARTTGRTIYHRTRPIREAVE
Ga0215015_100004811	3300021046	Soil	MKKMCAILAVALLSPYAVSRADAEGPVHWAARHVWNAAVETGDTMSNVAKTAGRTIYHRTRPIREAFE
Ga0210404_106247951	3300021088	Soil	MKKMYAILAGALLSPYAMSRADAEGPLHWTARHLRNAAVDTGDTISNVARTAGRTIYHRTRPIREAVE
Ga0210406_100244086	3300021168	Soil	MKKIGAILAVALLSPFAVGSADAEGPLHWTARHVTAAVADTGNTMSNVARTAERTIHHRTRPIRQAFE
Ga0210405_100356602	3300021171	Soil	MKKVCAILAVALLSPCAASRADAEGPLHWAAKHVRNAVVETGDTLSNVAKTAGRTIDHRTRPIRNAFE
Ga0210405_102449782	3300021171	Soil	MKKMCAILAVALLSPCVEYRVHAEGPLHWTARHVKKAAVETVDTASNVARTAERTINHRTRPIREAVE
Ga0210405_105607701	3300021171	Soil	MKKMYAILAVALLSPYAMSRADAEGPLHWTARHLRNAAVDTGDTISNVARTAGRTIYHRTRPIREAVE
Ga0210408_100059661	3300021178	Soil	MKKMGAILAVALLSPYAVSRADAEGPLHWTARHARNAAVETGDTISNVARTTGRTIYHRTRPIREAVE
Ga0212123_101264322	3300022557	Iron-Sulfur Acid Spring	MKKMCAILAVALLSPYALSRADAEGPLHWTARHVRNAAVETGDTISNVARTAGRTIYHRTRPIREAVE
Ga0212123_106589792	3300022557	Iron-Sulfur Acid Spring	MKKMCAIVAIALLSPYAVCSADAEGPVHWTARHVRKAALETGDTMSNVARTAGRTIYHRTRPIREAVE
Ga0233356_10165401	3300023046	Soil	MKKMCAILAVALLSPYAVSKADAEGPLHWTARHVTKAAVETGDTLSNVARTAGRTIYHRTQPVREAFE
Ga0207684_100123485	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKKIGAIIAAALLWPYAVGSADAAGPLQEGPLHWTARHVRQAAVETGDTLSNVARTTGKTIHHGTRTIRQAFR
Ga0207684_100637201	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ILAVALLSPYAASRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE
Ga0207684_108017611	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MCAIVAVVLLSPYAASRADAEGPLHWTARHVRNAAVETGDTLSNVARTAERTIYHRTRP
Ga0207646_102450142	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMYVILAVALLSPYAASRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE
Ga0207646_111873332	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKKIGAIIAAALLSPYAVSSADAAGPLHEGPLRWTARHVTQAAVETGDTLSNVARTTGRTIHHGTRAVREAFR
Ga0207646_117208861	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKKMYAILAVALLSPYAMSRADAEGQLHWTARHLRNAAVDTGDTISNVARTAGRTIYHRTRPIREA
Ga0209240_10479662	3300026304	Grasslands Soil	MKKMCAILAVALLSPYAASRADDEGPLHWTARHVTKAAVETGDTISNVARTAGRTINHRTKPIREAFE
Ga0209648_106200491	3300026551	Grasslands Soil	TSMKKMCAILAVALLSPYAVSKADAEGPLHWTARHVTKAAVETGDTLSNVARTAGRTIYHRTQPVREAFE
Ga0209214_10422632	3300027071	Forest Soil	MCVILAVALLSPYAASRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE
Ga0209419_10122931	3300027537	Forest Soil	VKKYMKKIGAILAAAVLWPGAVGTADAAGPLQEGPLRWTARHVRQAAVETGDTLSNVARTTGRTIHHGTRAVPQTFR
Ga0209656_100348026	3300027812	Bog Forest Soil	MKKICAILAVALLAPYSVSRADAEGPLHWTARHVRNAAVETGDTISNVARTAGRTIYHRTRPIREAVE
Ga0209380_105895281	3300027889	Soil	MKKMFAILAVALLSPYAASRADAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPIREAFE
Ga0209526_100521955	3300028047	Forest Soil	MKKMCAIVAVVLLSPYAVSRADAEGPLHWTARHVKNAAVETGDTLSNVARTAGRTIYHRTRPIREAFE
Ga0170824_1125851351	3300031231	Forest Soil	AILAAALLSPYAVGSANAAGPLQEGPLHWTARHVRTAAVETKDTLSNVARTTGRTLHHGTRAVRHALSS
Ga0318538_105001471	3300031546	Soil	MKKVYAILAVALLSATAVSRADEGPVHWAARHVRNAVVGTGETAANVARTAGRTIYHRTRPIREAFR
Ga0318538_106124162	3300031546	Soil	MCAILAVALLSPYAVYRAEAEGPLHWTARHVKNAAVDTGDTIHNVARTAGRTIYHRTRPVREAFE
Ga0310915_101105044	3300031573	Soil	MLAVALLAPYTASKADAEGPLHWTARHIKKAAVETGDTLSNVARTAGRTIHHRTRPIREAVE
Ga0307483_10408931	3300031590	Hardwood Forest Soil	LAVALLSPYAASRANAEGPLHWTARHVTKAAVETGDTISNVARTAGRTINHRTKPIREAF
Ga0307474_113521851	3300031718	Hardwood Forest Soil	MKKMYAILAVALLSPYAMSRADAEGPLHWTARHLRNAAVDTGDTISNVARTAGRTIYNITGRDPFAKRSSSW
Ga0306918_112168382	3300031744	Soil	MCAILAVALLSPYAMPKAEAEGPLHWTARHVKKAAVETGDTIHNVARTAGRTINHRTRPVREAFE
Ga0307477_100251173	3300031753	Hardwood Forest Soil	MKKIGAIIVAALLSLYAPGSADAAGPLQEGPLHWTARHLRQAAVETKDTLSNAARTTGKTFHHATRAVRRTFSGQ
Ga0307477_102000222	3300031753	Hardwood Forest Soil	MKKMCAILAVALLSPYAASRANAEGPLHWTARHVTKAAVETGDTISNVARTAGRTIYHRTKPVREAFE
Ga0306919_101265815	3300031879	Soil	MLAVALLAPYTASKADAEGPLHWTARHVKKAAVETGDTLSNVARTAGRTIHHRTRPIREAVE
Ga0306919_102727471	3300031879	Soil	MCAILAVALLSPYAMPKAEAEGPLHWTARHVKKAAVETGDTIHNVARTAGRTIYHRTRPTREAFQ
Ga0306925_107275081	3300031890	Soil	MKKMCAILAVALLSPYAVYRAEAEGPLHWTARHVKNAAVDTGDTIHNVARTAGRTIYHRTRPVREAFE
Ga0306923_117249762	3300031910	Soil	MCAILAVALLSPYAVYRAEAEGPLHWTARHVKNAAVDTGDTIHNVARTAGRTIYHRTRPVRE
Ga0310916_100453492	3300031942	Soil	MKKVYAILAVALLSATAVSRADEGPLHWAARHVRNAVVGTGETAANVARTAGRTIYHRTRPIREAFR
Ga0306926_105044114	3300031954	Soil	MLAVALLAPYTASKADAEGPLHWTARHVKKAAVETGDTLSNVARTAGRTIHHRTRPTREAVE
Ga0306926_123859651	3300031954	Soil	MKKVCTVLALALMSATAVSRADEGPLHWAARHVRNAVVGTGETAANVARTAGRTIYHRTRPIREAFR
Ga0307479_108637121	3300031962	Hardwood Forest Soil	ILAGALLSPYAMSRADAEGPLHWTARHLRNAAVDTGDTISNVARTAGRTIYHRTRPIREAVE
Ga0307479_118867542	3300031962	Hardwood Forest Soil	MKKMCAIVAVALLSPYAVGSADAEGPVHWTARHVRKAALETGDTMSNVARTAGRTIYHRTRPIREAVE
Ga0306922_108493322	3300032001	Soil	MCAILAIALLSPYVVYRAEAEGPLHWTARHVKKAAVDTGDTIHNVARTAGRTIYHRTRPVREAFE
Ga0307471_1018092342	3300032180	Hardwood Forest Soil	MCAMLAVALLSPYAVLRADAEGPLHWTARHVRKAAVETGDTLSNVARTAGRTIHHRTRPIGEAIE
Ga0310914_109955531	3300033289	Soil	SMKKVYAILAVALLSATAVSRADEGPVHWAARHVRNAVVGTGETAANVARTAGRTIYHRTRPIREAFR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102876

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences