Metagenome / Metatranscriptome Family F102897

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102897
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	63 residues
Representative Sequence	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQIGGNTPDNLARTLLRELVEKRT
Number of Associated Samples	92
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.25 %
% of genes near scaffold ends (potentially truncated)	36.63 %
% of genes from short scaffolds (< 2000 bps)	80.20 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.327 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.733 % of family members)
Environment Ontology (ENVO)	Unclassified (27.723 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.614 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.58% β-sheet: 32.97% Coil/Unstructured: 49.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07369	DUF1488	30.69
PF00313	CSD	6.93
PF04392	ABC_sub_bind	2.97
PF11967	RecO_N	2.97
PF13191	AAA_16	0.99
PF00487	FA_desaturase	0.99
PF16868	NMT1_3	0.99
PF07886	BA14K	0.99
PF05239	PRC	0.99
PF04228	Zn_peptidase	0.99
PF13185	GAF_2	0.99
PF00383	dCMP_cyt_deam_1	0.99
PF13683	rve_3	0.99
PF07650	KH_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.97
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.99
COG2321	Predicted metalloprotease	General function prediction only [R]	0.99
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.33 %
Unclassified	root	N/A	32.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.33 %
Unclassified	root	N/A	32.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.33 %
Unclassified	root	N/A	32.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.36 %
Unclassified	root	N/A	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.69 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	6.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.98 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.99 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.67 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	6.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	1.98 %
Azohydromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas	0.99 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.99 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.67 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	6.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	1.98 %
Azohydromonas aeria	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas aeria	0.99 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.99 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.67 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.97 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1.98 %
Azohydromonas aeria	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas aeria	0.99 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.99 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16964075	Not Available	1103	Open in IMG/M
2170459013\|GO6OHWN02G8REF	Not Available	527	Open in IMG/M
2199352025\|deepsgr__Contig_12032	Not Available	1221	Open in IMG/M
3300000652\|ARCol0yngRDRAFT_1008649	Not Available	735	Open in IMG/M
3300000789\|JGI1027J11758_11948786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	912	Open in IMG/M
3300004463\|Ga0063356_105642389	Not Available	537	Open in IMG/M
3300005093\|Ga0062594_100610177	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300005171\|Ga0066677_10213551	Not Available	1084	Open in IMG/M
3300005173\|Ga0066822_1002048	Not Available	953	Open in IMG/M
3300005440\|Ga0070705_100295919	Not Available	1157	Open in IMG/M
3300005441\|Ga0070700_100136258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1663	Open in IMG/M
3300005455\|Ga0070663_100032296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3607	Open in IMG/M
3300005459\|Ga0068867_101845877	Not Available	569	Open in IMG/M
3300005561\|Ga0066699_10077809	All Organisms → cellular organisms → Bacteria → Proteobacteria	2131	Open in IMG/M
3300006049\|Ga0075417_10518277	Not Available	600	Open in IMG/M
3300006057\|Ga0075026_100078240	All Organisms → cellular organisms → Bacteria → Proteobacteria	1607	Open in IMG/M
3300006797\|Ga0066659_10303597	Not Available	1219	Open in IMG/M
3300006800\|Ga0066660_10430219	Not Available	1098	Open in IMG/M
3300006846\|Ga0075430_101137237	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300006847\|Ga0075431_100543782	All Organisms → cellular organisms → Bacteria → Proteobacteria	1149	Open in IMG/M
3300006904\|Ga0075424_100099826	All Organisms → cellular organisms → Bacteria → Proteobacteria	3058	Open in IMG/M
3300009036\|Ga0105244_10467176	Not Available	580	Open in IMG/M
3300009090\|Ga0099827_10559313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	985	Open in IMG/M
3300009100\|Ga0075418_11886588	Not Available	650	Open in IMG/M
3300009137\|Ga0066709_100637513	Not Available	1523	Open in IMG/M
3300009162\|Ga0075423_10551202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1214	Open in IMG/M
3300009162\|Ga0075423_10928992	Not Available	923	Open in IMG/M
3300010371\|Ga0134125_12189749	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300010400\|Ga0134122_10044952	All Organisms → cellular organisms → Bacteria → Proteobacteria	3378	Open in IMG/M
3300012349\|Ga0137387_10826166	Not Available	670	Open in IMG/M
3300012481\|Ga0157320_1019252	Not Available	609	Open in IMG/M
3300012937\|Ga0162653_100069047	Not Available	568	Open in IMG/M
3300012960\|Ga0164301_10028700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2619	Open in IMG/M
3300012961\|Ga0164302_10003012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5725	Open in IMG/M
3300012961\|Ga0164302_11790905	Not Available	518	Open in IMG/M
3300012984\|Ga0164309_10997866	Not Available	690	Open in IMG/M
3300012986\|Ga0164304_11866664	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300012988\|Ga0164306_11577822	Not Available	565	Open in IMG/M
3300012989\|Ga0164305_11299294	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300014324\|Ga0075352_1155896	All Organisms → cellular organisms → Bacteria → Proteobacteria	645	Open in IMG/M
3300014745\|Ga0157377_11459472	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300015371\|Ga0132258_10833553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas aeria	2326	Open in IMG/M
3300015371\|Ga0132258_10867482	Not Available	2278	Open in IMG/M
3300015372\|Ga0132256_100028451	All Organisms → cellular organisms → Bacteria → Proteobacteria	5032	Open in IMG/M
3300015373\|Ga0132257_100235863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2180	Open in IMG/M
3300015374\|Ga0132255_100367495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2087	Open in IMG/M
3300015374\|Ga0132255_100769137	Not Available	1434	Open in IMG/M
3300016294\|Ga0182041_11227601	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300016371\|Ga0182034_10769019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	822	Open in IMG/M
3300017792\|Ga0163161_10125008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1936	Open in IMG/M
3300017997\|Ga0184610_1254856	Not Available	583	Open in IMG/M
3300018028\|Ga0184608_10118919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1119	Open in IMG/M
3300018028\|Ga0184608_10429970	Not Available	570	Open in IMG/M
3300018051\|Ga0184620_10190530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	678	Open in IMG/M
3300018072\|Ga0184635_10246124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	708	Open in IMG/M
3300020022\|Ga0193733_1090632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300021510\|Ga0222621_1133335	Not Available	529	Open in IMG/M
3300022195\|Ga0222625_1646815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	583	Open in IMG/M
3300022756\|Ga0222622_10518902	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300025933\|Ga0207706_11071067	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300025942\|Ga0207689_10026273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4876	Open in IMG/M
3300026035\|Ga0207703_11805788	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300026088\|Ga0207641_11132799	Not Available	781	Open in IMG/M
3300026846\|Ga0208273_100618	Not Available	949	Open in IMG/M
3300027909\|Ga0209382_10405263	All Organisms → cellular organisms → Bacteria → Proteobacteria	1518	Open in IMG/M
3300028710\|Ga0307322_10093812	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300028711\|Ga0307293_10076749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1053	Open in IMG/M
3300028711\|Ga0307293_10149341	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300028718\|Ga0307307_10138134	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300028755\|Ga0307316_10324608	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300028768\|Ga0307280_10338455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	554	Open in IMG/M
3300028784\|Ga0307282_10547075	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300028796\|Ga0307287_10070504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1303	Open in IMG/M
3300028807\|Ga0307305_10168912	All Organisms → cellular organisms → Bacteria → Proteobacteria	1009	Open in IMG/M
3300028814\|Ga0307302_10581620	Not Available	556	Open in IMG/M
3300028824\|Ga0307310_10684667	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300028828\|Ga0307312_10000275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22853	Open in IMG/M
3300028885\|Ga0307304_10332013	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300030988\|Ga0308183_1183643	Not Available	535	Open in IMG/M
3300031093\|Ga0308197_10373789	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300031114\|Ga0308187_10173792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	736	Open in IMG/M
3300031474\|Ga0170818_110439613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1970	Open in IMG/M
3300031740\|Ga0307468_102396242	Not Available	515	Open in IMG/M
3300031854\|Ga0310904_10012734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3479	Open in IMG/M
3300031858\|Ga0310892_10054965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1995	Open in IMG/M
3300031890\|Ga0306925_10574540	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300031910\|Ga0306923_10787422	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300031913\|Ga0310891_10002187	All Organisms → cellular organisms → Bacteria → Proteobacteria	3978	Open in IMG/M
3300031954\|Ga0306926_10259275	All Organisms → cellular organisms → Bacteria → Proteobacteria	2154	Open in IMG/M
3300032000\|Ga0310903_10017983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2340	Open in IMG/M
3300032075\|Ga0310890_11109826	Not Available	641	Open in IMG/M
3300032174\|Ga0307470_10665520	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300032782\|Ga0335082_10038626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5025	Open in IMG/M
3300032782\|Ga0335082_10214720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1819	Open in IMG/M
3300032783\|Ga0335079_10000280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	59456	Open in IMG/M
3300032783\|Ga0335079_11136104	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300033433\|Ga0326726_10176877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1959	Open in IMG/M
3300034090\|Ga0326723_0002722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6486	Open in IMG/M
3300034644\|Ga0370548_036155	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300034644\|Ga0370548_142557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	513	Open in IMG/M
3300034681\|Ga0370546_033997	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.26%
Host-Associated	Host-Associated	25.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.35%
Plants	Host-Associated → Plants	25.74%
Aquatic	Environmental → Aquatic	8.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.87%
Sediment	Environmental → Aquatic → Sediment	7.92%
Peat	Environmental → Terrestrial → Peat	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.95%
Loam	Environmental → Terrestrial → Soil → Loam	2.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000652	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Col-0 young rhizosphere DNA	Host-Associated	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026846	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00356630	2088090014	Soil	MSPGAATWESLEMNLRTWREITDVYGGKITKASYRRSGRMVTVRTSFGSKTAQIGGNTPDRLARTLLRELVEKRT
N57_07107100	2170459013	Grass Soil	MSLGAWKEITDVYGGKITRASYKLSGRMVTVRTSFGSSTTHIGGHTPQQLARTLLRELVDKRKA
deepsgr_01919670	2199352025	Soil	MSLGAWKEITDVYGGKITRASYRFSGRMVTVRTSFGSSTTHIGGHTPQQLARTLLRELVDKRKA
ARCol0yngRDRAFT_10086491	3300000652	Arabidopsis Rhizosphere	REITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN*
JGI1027J11758_119487864	3300000789	Soil	GRAVNLCVGQGGLMVLGVWREIADVHGGKVTKASYRLFDRTVTVRTSFGSKTAQIGGQTPDRLARTLLRELVNERT*
Ga0063356_1056423891	3300004463	Arabidopsis Thaliana Rhizosphere	MSLGAWKEITDVYGGRITKASYRFSDRRVTVRTPFGSKTAHIGGHTPERLARTLLRELVGKENA*
Ga0062594_1006101773	3300005093	Soil	MSPGAATWESLEMNLGVEEITDVYGGKITKAWYRRSGRMVTVRTSFGSKTAQISGQTPDSLVRTLLRELVEKRT*
Ga0066677_102135512	3300005171	Soil	MGVGVWREITDVYGGKITKVSYRLFGRRVTVRTSFGSRTAQIGGNTPDRLARTLLRELVTREPEIVCHEE*
Ga0066822_10020483	3300005173	Soil	EMNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0070705_1002959191	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0070700_1001362584	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0070663_1000322966	3300005455	Corn Rhizosphere	MNLGAWKEITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0068867_1018458771	3300005459	Miscanthus Rhizosphere	ITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0066699_100778095	3300005561	Soil	MGVGVWREITDVYGGKITKVSYRLFGRRVTVRTSFGSRTAQIGGNTPDRLARTLLRELVTREPEIACHEE*
Ga0075417_105182771	3300006049	Populus Rhizosphere	MTVGVWREITDVYGGKITKAAYKLSDRMVTVKTSFGSKTAQIGGHTPDGLARTLLRELVDRET*
Ga0075026_1000782404	3300006057	Watersheds	MSLGVWREITDVYGGKITKASYRFSDRMVTVRTPFGSKTTQIGGHTPERLARTLLRELVGNGKA*
Ga0066659_103035972	3300006797	Soil	MGVGVWREITDVYGGKITKASYRLFGRRVTVRTSFGSRTAQIGGNTPDRLARTLLRELVTREPEIACHEE*
Ga0066660_104302192	3300006800	Soil	MGVGVWREITDVYGGKITKASYRLFGRRVTVRTSFGSRTAQIGGNTPDRLARTLLRELVDKEPEIACHEE*
Ga0075430_1011372371	3300006846	Populus Rhizosphere	MTVGVWREITDVYGGKITKAAYKLSDRMVTVKTSFGSKTAQIGGHTPDGLARTLLREL
Ga0075431_1005437822	3300006847	Populus Rhizosphere	VWREITDVYGGKITKAAYKLSDRMVTVKTSFGGHTPDGLARTLLRELVDRET*
Ga0075424_1000998267	3300006904	Populus Rhizosphere	MNFGAWREITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0105244_104671762	3300009036	Miscanthus Rhizosphere	GAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN
Ga0099827_105593131	3300009090	Vadose Zone Soil	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTQIAGYTPERLARTLLRELVGKE
Ga0075418_118865882	3300009100	Populus Rhizosphere	ICFYLAPSLTSPGAATWESLEMNLGVEEITDVYGGKITKAWYRRSGRMVTVRTSFGSKTAQISGQTPDSLVRTLLRELVEKRT*
Ga0066709_1006375132	3300009137	Grasslands Soil	MGVGVWREITDVYGGNITKASYSLFGRRVTVRTSFGSKTAQIGGHTPDRLARALLRELVDKRT*
Ga0075423_105512022	3300009162	Populus Rhizosphere	MALGVWREIADVYGGKITRASYRLFDRTVTVRTSFGSKTAQIGGHTPDRLARTLLREMVNERT*
Ga0075423_109289921	3300009162	Populus Rhizosphere	HGETREMNLGAWKEITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0134125_121897492	3300010371	Terrestrial Soil	MNLGAWREITDVYGGKITKATYRRSGQMVTVRTSFGSKTAQIGGNTPDNLARTLLRELVEKRT
Ga0134122_100449523	3300010400	Terrestrial Soil	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQIGGNTPDNLARTLLRELVEKRT*
Ga0137387_108261662	3300012349	Vadose Zone Soil	MGVGVWREITDVYGGKITKASYRLFGRRVTVRTSFGSKTAQIGGHTPDRLARALLRELVDKRT*
Ga0157320_10192521	3300012481	Arabidopsis Rhizosphere	EITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN*
Ga0162653_1000690472	3300012937	Soil	MNLGVWREITDVYGGKITKAAYKLSDRMVTVKTSFGSKTAQIGGHTPDGLARTLLRELVDRET*
Ga0164301_100287006	3300012960	Soil	MSPGAATWESLEMNLGVEEITDVYGGKITKAWYRRSGRMVTVRTSFGSKTAQISGQTPDSLARTLLRELVEKRT*
Ga0164302_100030123	3300012961	Soil	MSPGAATWESLEMNLGVEEITDVYGGKITKAWYRRSGRMVTVRTSFGSKMAQISGQTPDSLARTLLRELVEKRT*
Ga0164302_117909052	3300012961	Soil	MVVGVWREITDVYGGKVTRASYRLFDRTVTVRTSCGSKTAQIGGHTPDRLARTLLRELVNEGT*
Ga0164309_109978662	3300012984	Soil	MVVGVWREITDVYGGKVTRASYRLFDRTVTVRTSFGSKTAQIGGHTPDRLARTLLRELVNEGT*
Ga0164304_118666641	3300012986	Soil	MSPGAATWESLEMNLGVEEITDVYGGKITKAWYRRSGRMVTVRTSFGSKTAQISGQTPDSLART
Ga0164306_115778221	3300012988	Soil	LSFHASILSTGNSREMGLGAWKEITDVYGGKITRASYKLSGRMVTVRTSFGSSTTHIGGHNPQRLARTLLRELVDKRKA*
Ga0164305_112992942	3300012989	Soil	MSPGAATWESLEMNLGVEEITDVYGGKITKAWYRRSGRMVTVRTSFGSKTIQIGGHTPDSLARTLLRELVEKRT*
Ga0075352_11558963	3300014324	Natural And Restored Wetlands	MSLGAWKEITDVYGGKITKASYRLSDRMVTVRTPFGSKTTHIGGHTPERLARTLLRELVGKENA*
Ga0157377_114594721	3300014745	Miscanthus Rhizosphere	EITDVYGGRITKASYRFSDRMVTVRTPFGSKTAHIGGHTPERLARTLLRELVGKENA*
Ga0132258_108335534	3300015371	Arabidopsis Rhizosphere	MVVGVWREITDVYGGKVTRASYRLFDRTVTVRTSFGSKTAQIGGYTPDRLARTLLRELVNEGT*
Ga0132258_108674822	3300015371	Arabidopsis Rhizosphere	MVVGVWREITDVYGGKVTRASYRFFDRTVTVRTSFGSKTAQIGGHTPDRLARTLLRELVNEGT*
Ga0132256_1000284512	3300015372	Arabidopsis Rhizosphere	MDLGVWREITDVYGGKVTRASYRLFDRTVTVRTSFGSKTAQIGGHTPDRLARTLLRKLVNERT*
Ga0132257_1002358633	3300015373	Arabidopsis Rhizosphere	MDLGVWREITDVYGGKVTRASYRLFDRTVTVRTSFGSKAAQIGGHTPDRLARSLLRKLVNERT*
Ga0132255_1003674951	3300015374	Arabidopsis Rhizosphere	DVYGGKVTRASYRLFDRTVTVRTSFGSKTAQIGGHTPDRLARTLLRELVNEGT*
Ga0132255_1007691373	3300015374	Arabidopsis Rhizosphere	MVVGVWREITDVYGGKVTRASYRLFDRTVTVRTSFGSKTAQIGGHTPDRLARTLLREL
Ga0182041_112276012	3300016294	Soil	MNLGAWREITDVYGGKITKASYRRSGRMVTVRTSFGSKTAQMSGNTPDSLARTLLRELVE
Ga0182034_107690191	3300016371	Soil	VYGGKITKASYRRSGRMVTVRTSFGSKTAQMSGNTPDSLARTLLRELVEKRT
Ga0163161_101250084	3300017792	Switchgrass Rhizosphere	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLARTLLRELVEKRN
Ga0184610_12548562	3300017997	Groundwater Sediment	MAAPVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKENEKRDYR
Ga0184608_101189192	3300018028	Groundwater Sediment	MSLGAWKEITEVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKENEKRDYRKFETR
Ga0184608_104299702	3300018028	Groundwater Sediment	MNLGVWREITDVYGGKITKAAYKLSDRMVTVKTSFGSKTAQIGGHTPDGLARTLLRELVDRET
Ga0184620_101905301	3300018051	Groundwater Sediment	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKENQK
Ga0184635_102461241	3300018072	Groundwater Sediment	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKENEKRDYRKFETR
Ga0193733_10906322	3300020022	Soil	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKMTHIGVHTRLARTLLRELVRKENA
Ga0222621_11333352	3300021510	Groundwater Sediment	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKENA
Ga0222625_16468152	3300022195	Groundwater Sediment	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKENEKRDYRKFET
Ga0222622_105189021	3300022756	Groundwater Sediment	ITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLLRELVDKGKA
Ga0207706_110710672	3300025933	Corn Rhizosphere	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRT
Ga0207689_100262734	3300025942	Miscanthus Rhizosphere	MNLGAWKEITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN
Ga0207703_118057882	3300026035	Switchgrass Rhizosphere	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVE
Ga0207641_111327991	3300026088	Switchgrass Rhizosphere	LGAWREITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKR
Ga0208273_1006181	3300026846	Soil	REMNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN
Ga0209382_104052633	3300027909	Populus Rhizosphere	MTVGVWREITDVYGGKITKAAYKLSDRMVTVKTSFGSKTAQIGGHTPDGLARTLLRELVDRET
Ga0307322_100938121	3300028710	Soil	MSLGVWRDITDVYGGKITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLL
Ga0307293_100767492	3300028711	Soil	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKFDENIPR
Ga0307293_101493412	3300028711	Soil	MSLGVWRDITDVYGGKITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLLRELVDKGKA
Ga0307307_101381341	3300028718	Soil	VYGGKITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLLRELVDKGKA
Ga0307316_103246082	3300028755	Soil	EVYGGKITKASYRFSDRMVTVRTPFGSKTAHIGGHTPERLARTLLRELVGKENA
Ga0307280_103384552	3300028768	Soil	MSLRAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKFDENI
Ga0307282_105470752	3300028784	Soil	MSLGVWREITDVYGGKITKASYKFFDRMVTVRTSFGSKTTQIGGHAPERLARILLREL
Ga0307287_100705042	3300028796	Soil	MSLRAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVGKFDENIPR
Ga0307305_101689123	3300028807	Soil	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTAHIGGHTPERLARTLLRELVGKENA
Ga0307302_105816201	3300028814	Soil	MSLGAWKEITDVYGGKITKASYKLSGRMVTVRTSFGSRTTHIGGHTPQRLARTLLRELVDKGKA
Ga0307310_106846672	3300028824	Soil	MSLRAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTAHIGGHTPERLARTLLRELVGKENA
Ga0307312_1000027532	3300028828	Soil	MGEPLMSLGVWRDITDVYGGKITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLLRELVDKGKA
Ga0307304_103320131	3300028885	Soil	MSLRAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTAHVGGHTLERLARTLLRELVGKENA
Ga0308183_11836431	3300030988	Soil	QGSATWESRLMSLGVWRDITDVYGGKITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLLRELVDKGKA
Ga0308197_103737892	3300031093	Soil	MSLGVWREITDVYGGKITKASYKFFDRMVTVRTSFGSKTTQIGGHAPERLARILLRELVD
Ga0308187_101737923	3300031114	Soil	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTAHVGGHTPERLARTLLRELVGKENA
Ga0170818_1104396132	3300031474	Forest Soil	MSLGAWKEITDVYGGKITRASYRLSGRMVTVRTSFGSSTTHIGGHTPQQLARTLLRELVDKRKA
Ga0307468_1023962422	3300031740	Hardwood Forest Soil	MVLGVWREIADVYGGKVTKASYRLFDRTVTVRTSFGSKTAQIGGHTPARLARTLLRELVNERT
Ga0310904_100127343	3300031854	Soil	MNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN
Ga0310892_100549654	3300031858	Soil	VYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN
Ga0306925_105745404	3300031890	Soil	MNLGAWREITDVYGGKITKAWYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAR
Ga0306923_107874223	3300031910	Soil	MNLGAWREITDVYGGKITKASYRRSGRMVTVRTSFGSKTAQMSGNTPDSLARTLLRELVEKRT
Ga0310891_1000218710	3300031913	Soil	MNLGVWREITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN
Ga0306926_102592755	3300031954	Soil	MNLGAWREITDVYGGKITKAWYRRSGRMVTVRTSFGSKTAQMSGNTPDSLARTLLRELVEKRT
Ga0310903_100179834	3300032000	Soil	MNLGAWKEITDVYGGKITKATYRRSGRMVTVRTSFGTKTAQMSGNTPDSLAKTLLRELVEKRN
Ga0310890_111098261	3300032075	Soil	WREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLARTLLRELVEKRN
Ga0307470_106655202	3300032174	Hardwood Forest Soil	MTVGVWREITDVYGGKITKAAYKLSDRMVTVKTSFGSKTAQIGGHTPDGLAR
Ga0335082_100386263	3300032782	Soil	MNLGAWKEITDVYGGKITKASYRRSGRMVTVRTSFGSKTAQIGRHPPDSLARTLLRELVEKRT
Ga0335082_102147204	3300032782	Soil	MSFGAWREITDVYGGKITKASYRLSDRMVTVRTSFGSKTTHIGGHTPEQLARTLLRELVSKGRA
Ga0335079_100002807	3300032783	Soil	MNLGVWREITDVYGGKITRASYRLSGRIVTVRTSFGSKTAQIGGHTPERLARVLLRALVDKRI
Ga0335079_111361041	3300032783	Soil	MNLGAWKEITDVYGGKITKASYRRSGRMVTVRTSFGSKTAQIGRHPPDSLAR
Ga0326726_101768772	3300033433	Peat Soil	MSLGAWKEITDVYGGKITKASYRFSDRMVTVRTAFGSKTTHIGGHTPERLARTLLRELVGKENA
Ga0326723_0002722_2867_3061	3300034090	Peat Soil	MSLGAWREIRDVYGGKITKASYRLSDRMVTVRTSFGSKTTHIGGHTPEQLARALLRELVSKGRA
Ga0370548_036155_218_442	3300034644	Soil	MSLGVWRDITDVYGGKITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLLRELVDKGKPREIARLESGK
Ga0370548_142557_262_471	3300034644	Soil	MSLRAWKEITDVYGGKITKASYRFSDRMVTVRTPFGSKTTHIGVHTPERLARTLLRELVDKGKSRDRVP
Ga0370546_033997_554_736	3300034681	Soil	VWRDITDVYGGKITKASYSFSNKMMTVRTSFGSKTTKIGGHTPERLARTLLRELVDKGKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102897

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences