Metagenome Family F102950

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102950
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	48 residues
Representative Sequence	FSVITAKTPFLSSPLISLRYKSVKGVSYTRTNISIGGDCLADIPTEVR
Number of Associated Samples	31
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	12.87 %
% of genes near scaffold ends (potentially truncated)	82.18 %
% of genes from short scaffolds (< 2000 bps)	83.17 %
Associated GOLD sequencing projects	30
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.307 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (45.545 % of family members)
Environment Ontology (ENVO)	Unclassified (46.535 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 35.53% Coil/Unstructured: 64.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02771	Acyl-CoA_dh_N	0.99
PF01179	Cu_amine_oxid	0.99
PF16787	NDC10_II	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.99
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
All Organisms	root	All Organisms	30.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
cellular organisms	root	All Organisms → cellular organisms	24.75 %
Viruses	superkingdom	All Organisms → Viruses	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	24.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	14.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Ascomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
saccharomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Pezizomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
leotiomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
dothideomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta	1.98 %
Lecanoromycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Dothideomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes	1.98 %
OSLEUM clade	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Umbilicariomycetidae	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae	0.99 %
Dothideomycetes incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Umbilicariales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales	0.99 %
Zopfiaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis → Zopfiaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Umbilicariaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae	0.99 %
Zopfia	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis → Zopfiaceae → Zopfia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Lasallia	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia	0.99 %
Zopfia rhizophila	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis → Zopfiaceae → Zopfia → Zopfia rhizophila	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.31 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.94 %
Zopfia rhizophila CBS 207.26	strain	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis → Zopfiaceae → Zopfia → Zopfia rhizophila → Zopfia rhizophila CBS 207.26	0.99 %
Lasallia pustulata	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101524201	Not Available	564	Open in IMG/M
3300005176\|Ga0066679_10809579	Not Available	597	Open in IMG/M
3300006794\|Ga0066658_10483105	Not Available	674	Open in IMG/M
3300006797\|Ga0066659_10878417	Not Available	748	Open in IMG/M
3300006797\|Ga0066659_11044406	Not Available	683	Open in IMG/M
3300006797\|Ga0066659_11236282	Not Available	623	Open in IMG/M
3300006797\|Ga0066659_11843985	Not Available	512	Open in IMG/M
3300007265\|Ga0099794_10502738	Not Available	638	Open in IMG/M
3300007265\|Ga0099794_10737764	Not Available	525	Open in IMG/M
3300007788\|Ga0099795_10334545	Not Available	674	Open in IMG/M
3300007788\|Ga0099795_10630179	Not Available	512	Open in IMG/M
3300010159\|Ga0099796_10474593	Not Available	559	Open in IMG/M
3300012200\|Ga0137382_10407122	All Organisms → cellular organisms → Eukaryota	959	Open in IMG/M
3300012202\|Ga0137363_10712458	Not Available	850	Open in IMG/M
3300012202\|Ga0137363_10749336	All Organisms → cellular organisms → Eukaryota	827	Open in IMG/M
3300012202\|Ga0137363_11384740	Not Available	593	Open in IMG/M
3300012206\|Ga0137380_11273963	Not Available	620	Open in IMG/M
3300012206\|Ga0137380_11524967	All Organisms → cellular organisms → Eukaryota → Opisthokonta	553	Open in IMG/M
3300012208\|Ga0137376_11633103	Not Available	536	Open in IMG/M
3300012209\|Ga0137379_11314305	Not Available	628	Open in IMG/M
3300012209\|Ga0137379_11540144	Not Available	565	Open in IMG/M
3300012210\|Ga0137378_10722573	Not Available	907	Open in IMG/M
3300012210\|Ga0137378_11316177	Not Available	638	Open in IMG/M
3300012210\|Ga0137378_11853679	Not Available	506	Open in IMG/M
3300012210\|Ga0137378_11884437	Not Available	500	Open in IMG/M
3300012211\|Ga0137377_11664075	Not Available	561	Open in IMG/M
3300012349\|Ga0137387_11313899	Not Available	505	Open in IMG/M
3300012351\|Ga0137386_11047799	All Organisms → cellular organisms → Eukaryota → Opisthokonta	578	Open in IMG/M
3300012351\|Ga0137386_11081697	Not Available	567	Open in IMG/M
3300012357\|Ga0137384_10955154	Not Available	690	Open in IMG/M
3300012357\|Ga0137384_11211913	Not Available	600	Open in IMG/M
3300012357\|Ga0137384_11235462	Not Available	593	Open in IMG/M
3300012357\|Ga0137384_11545683	Not Available	513	Open in IMG/M
3300012359\|Ga0137385_10576293	Not Available	948	Open in IMG/M
3300012359\|Ga0137385_10724662	Not Available	830	Open in IMG/M
3300012359\|Ga0137385_10778768	All Organisms → cellular organisms → Eukaryota → Opisthokonta	796	Open in IMG/M
3300012359\|Ga0137385_10789658	All Organisms → cellular organisms → Eukaryota	789	Open in IMG/M
3300012359\|Ga0137385_11036023	Not Available	676	Open in IMG/M
3300012359\|Ga0137385_11162904	Not Available	632	Open in IMG/M
3300012359\|Ga0137385_11622887	Not Available	511	Open in IMG/M
3300012361\|Ga0137360_11398587	Not Available	602	Open in IMG/M
3300012922\|Ga0137394_11367328	Not Available	570	Open in IMG/M
3300012923\|Ga0137359_10566484	All Organisms → cellular organisms → Eukaryota	998	Open in IMG/M
3300012923\|Ga0137359_11033161	All Organisms → cellular organisms → Eukaryota	704	Open in IMG/M
3300012924\|Ga0137413_11025320	Not Available	648	Open in IMG/M
3300012924\|Ga0137413_11065187	Not Available	638	Open in IMG/M
3300012924\|Ga0137413_11162473	Not Available	613	Open in IMG/M
3300012924\|Ga0137413_11451501	Not Available	556	Open in IMG/M
3300012925\|Ga0137419_11568132	Not Available	559	Open in IMG/M
3300012925\|Ga0137419_11690253	Not Available	540	Open in IMG/M
3300012925\|Ga0137419_11726329	Not Available	534	Open in IMG/M
3300012944\|Ga0137410_11307229	Not Available	627	Open in IMG/M
3300019890\|Ga0193728_1005302	All Organisms → cellular organisms → Eukaryota → Opisthokonta	6541	Open in IMG/M
3300019890\|Ga0193728_1028602	All Organisms → Viruses → Predicted Viral	2776	Open in IMG/M
3300019890\|Ga0193728_1188863	Not Available	874	Open in IMG/M
3300019890\|Ga0193728_1195432	Not Available	853	Open in IMG/M
3300019890\|Ga0193728_1265622	All Organisms → cellular organisms → Eukaryota → Opisthokonta	676	Open in IMG/M
3300019890\|Ga0193728_1275534	Not Available	656	Open in IMG/M
3300019890\|Ga0193728_1307704	Not Available	596	Open in IMG/M
3300021404\|Ga0210389_11191225	Not Available	587	Open in IMG/M
3300027671\|Ga0209588_1155246	Not Available	724	Open in IMG/M
3300027895\|Ga0209624_10477019	Not Available	831	Open in IMG/M
3300027895\|Ga0209624_10717510	Not Available	659	Open in IMG/M
3300027908\|Ga0209006_10200693	Not Available	1732	Open in IMG/M
3300027908\|Ga0209006_10337038	Not Available	1280	Open in IMG/M
3300027908\|Ga0209006_10455538	All Organisms → Viruses → Predicted Viral	1071	Open in IMG/M
3300027908\|Ga0209006_10777783	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata	778	Open in IMG/M
3300027908\|Ga0209006_10850025	Not Available	736	Open in IMG/M
3300027908\|Ga0209006_11147350	All Organisms → cellular organisms → Eukaryota → Opisthokonta	610	Open in IMG/M
3300027908\|Ga0209006_11318864	Not Available	557	Open in IMG/M
3300028794\|Ga0307515_10001100	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes	61899	Open in IMG/M
3300028794\|Ga0307515_10004832	All Organisms → cellular organisms → Eukaryota → Opisthokonta	27568	Open in IMG/M
3300028794\|Ga0307515_10009200	All Organisms → cellular organisms → Eukaryota → Opisthokonta	19141	Open in IMG/M
3300028794\|Ga0307515_10016146	Not Available	13692	Open in IMG/M
3300028794\|Ga0307515_10022858	All Organisms → cellular organisms → Eukaryota → Opisthokonta	10999	Open in IMG/M
3300028794\|Ga0307515_10023303	All Organisms → cellular organisms → Eukaryota	10856	Open in IMG/M
3300028794\|Ga0307515_10030121	All Organisms → cellular organisms → Eukaryota	9133	Open in IMG/M
3300028794\|Ga0307515_10037747	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Dothideomycetes incertae sedis → Zopfiaceae → Zopfia → Zopfia rhizophila → Zopfia rhizophila CBS 207.26	7752	Open in IMG/M
3300028794\|Ga0307515_10045335	Not Available	6760	Open in IMG/M
3300028794\|Ga0307515_10045451	All Organisms → cellular organisms → Eukaryota → Opisthokonta	6746	Open in IMG/M
3300028794\|Ga0307515_10109667	All Organisms → Viruses → Predicted Viral	3239	Open in IMG/M
3300028794\|Ga0307515_10110661	All Organisms → Viruses → Predicted Viral	3212	Open in IMG/M
3300028794\|Ga0307515_10248594	All Organisms → Viruses → Predicted Viral	1535	Open in IMG/M
3300028794\|Ga0307515_10711081	Not Available	621	Open in IMG/M
3300028794\|Ga0307515_10876890	Not Available	526	Open in IMG/M
3300033179\|Ga0307507_10005239	All Organisms → cellular organisms → Eukaryota	21568	Open in IMG/M
3300033179\|Ga0307507_10006386	All Organisms → cellular organisms → Eukaryota	18146	Open in IMG/M
3300033179\|Ga0307507_10020380	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	7427	Open in IMG/M
3300033179\|Ga0307507_10257431	All Organisms → Viruses → Predicted Viral	1119	Open in IMG/M
3300033179\|Ga0307507_10372628	All Organisms → cellular organisms → Eukaryota → Opisthokonta	827	Open in IMG/M
3300033179\|Ga0307507_10388119	All Organisms → cellular organisms → Eukaryota	800	Open in IMG/M
3300033179\|Ga0307507_10441264	Not Available	723	Open in IMG/M
3300033179\|Ga0307507_10452102	Not Available	709	Open in IMG/M
3300033179\|Ga0307507_10555298	Not Available	604	Open in IMG/M
3300033179\|Ga0307507_10562882	Not Available	598	Open in IMG/M
3300033179\|Ga0307507_10564176	Not Available	597	Open in IMG/M
3300033179\|Ga0307507_10596710	Not Available	571	Open in IMG/M
3300033179\|Ga0307507_10619206	Not Available	555	Open in IMG/M
3300033179\|Ga0307507_10636015	Not Available	544	Open in IMG/M
3300033179\|Ga0307507_10639579	Not Available	542	Open in IMG/M
3300033179\|Ga0307507_10645812	Not Available	538	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.31%
Host-Associated	Host-Associated	30.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.31%
Plants	Host-Associated → Plants	30.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.31%
Roots	Host-Associated → Plants → Roots	30.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.41%
Unclassified	Host-Associated → Plants → Roots → Unclassified	30.69%
Loam	Environmental → Terrestrial → Soil → Loam	9.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.48%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	30.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	45.54%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	30.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300033179	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1015242011	3300002245	Forest Soil	AKTPFLSSLLIFLYYKSVKWVSYTRTNIFINRSYLIDMPAEVR*
Ga0066679_108095792	3300005176	Soil	ITAKTPFLSSLLISLHHESVKGVSCTRTDISTGGDCLVDIPVEIR*
Ga0066658_104831051	3300006794	Soil	SIITAKTPFLSSPLISLYCKSIKGVSYTRTNISIGGDYLTDIPIKIR*
Ga0066659_108784171	3300006797	Soil	TIKTPFLSSPLISLYYKSVKGASYTRTNISVGGDCLTDISTEVR*
Ga0066659_110444061	3300006797	Soil	KTPFLSSPLISLYYKSVKGVSCTRTNISVGGDYLADIPIEVR*
Ga0066659_112362821	3300006797	Soil	AKTPFLSSPLISLRYKSVKGVSCTKTNISAGGYYLMDIPVEVR*
Ga0066659_118439852	3300006797	Soil	MSLSVITAKMPFLSNPLISLYYKSIKGVSYIRTNISADGDYFVDISIEVR*
Ga0099794_105027381	3300007265	Vadose Zone Soil	MSLSVTTAKTPFLSSPLISLYYKSVKGVSYTRTNISIGGGCLIDISAEVSIEVSIEVR*
Ga0099794_107377641	3300007265	Vadose Zone Soil	SPLISLRYKSVKGVSYTRTNISIGENCLTDIPTEVR*
Ga0099795_103345451	3300007788	Vadose Zone Soil	LISLYYKSIKGVSYTRTNISIGGDCLTDIPMEVR*
Ga0099795_106301791	3300007788	Vadose Zone Soil	FSVITAKTPFLSSPLISLYYKSVKGISYTRTNISIGGDYLTDIPVEVR*
Ga0099796_104745932	3300010159	Vadose Zone Soil	LSIITTKTPFLNSLLISLYYKSVKGISYTRTNISIGGGYLIDMSAEVSIEVR*
Ga0137382_104071221	3300012200	Vadose Zone Soil	KLNIWTPYGTSLSIITVKTPFLSSPLISLRHKSVKGVSYTKTNISVGGYCLADIPIEVR*
Ga0137363_107124581	3300012202	Vadose Zone Soil	GTSLSVTTIKTPFLSSPLISLYCKSVKGVSYTRTNISISRDCFIDMPIEVR*
Ga0137363_107493361	3300012202	Vadose Zone Soil	TAKTPFLSSPLISLRYKSVKGVSYTRTNISIGGDYLTDIPMEVR*
Ga0137363_113847401	3300012202	Vadose Zone Soil	IRAPYRMSLSIMTVKIPFLSSPLISLRRKSIKGVSCTRTNISAGGDCFTDMPAEVR*
Ga0137380_112739632	3300012206	Vadose Zone Soil	MFFSIITVKTLFLSSPLISLHYESVKGVSCTKTDISVGGDCLADIPAEVR*
Ga0137380_115249671	3300012206	Vadose Zone Soil	RIFLSIMTIKTLFLSSPLISLYHESVKGVSCTRTDISTGKDCLIDIPAEVK*
Ga0137376_116331031	3300012208	Vadose Zone Soil	LCIITAKAPFLSSLLISLYYKPIKGVSYTRTDISIGGDCFADVPAEVR*
Ga0137379_113143051	3300012209	Vadose Zone Soil	TPFLSSPLISLRHESVKGVSYTRTDISTGGDCFMDIPAEVR*
Ga0137379_115401441	3300012209	Vadose Zone Soil	SLLIFLCHESVKGVSCTRTDISVGGDCLADIPAEIR*
Ga0137378_107225732	3300012210	Vadose Zone Soil	SLSIKTTKTPFLSSLLISLYYKSIKGVSCTRTNISAGGDYLADLPTEVR*
Ga0137378_113161771	3300012210	Vadose Zone Soil	LSIITTKTPFLSSLLISLCRESVKGVSCTRTDIFAGGDYLIDIPAEVR*
Ga0137378_118536792	3300012210	Vadose Zone Soil	APCGISLSIMTTKIPFLSSPLISLYYESIKGVSCTRTDISAGGDCFADILIEVR*
Ga0137378_118844371	3300012210	Vadose Zone Soil	IITAKTPFLSSLLISLYYKSIKGVSCTRTNISISGDYLADIPVEVR*
Ga0137377_116640751	3300012211	Vadose Zone Soil	MPYGISLSIITAKTPFLSSLLIFLHHKSVNGASCTKTNISVCGDYLTDIPIELAD
Ga0137387_113138991	3300012349	Vadose Zone Soil	APYGMFLSITTTKTPFLSSLLIFLHHKSIKGVSCTKTNISIGGDCLADIPVEVK*
Ga0137386_110477992	3300012351	Vadose Zone Soil	CGISFSIITTKTPFLSSLLISLHYKSGKGVSCTKTNISTGRDYLTDIPVEVR*
Ga0137386_110816971	3300012351	Vadose Zone Soil	TPYRTSLSIITAKMPFSSSLLISLCYESIKGVSCTRTNISIGGDCLADIPAEVK*
Ga0137384_109551542	3300012357	Vadose Zone Soil	SLFVITVKTPFLSSLLISLCQESIKGVSCTRTNISAGGDCLMDIPVEVR*
Ga0137384_112119131	3300012357	Vadose Zone Soil	MSLSVMIIKTPFLSSLLISLCHKSIKGVSCTKTNIFVGGDCLMDIPIEVR*
Ga0137384_112354621	3300012357	Vadose Zone Soil	RTSLSIIITKMPFSSSPLISLYHESIKGGFYTRTDISIGGDCLADIPVEVK*
Ga0137384_115456831	3300012357	Vadose Zone Soil	SIITIKIPFLSSPLISLHYKSVKGVSCTRTNISIGVDYIVDIPVEVR*
Ga0137385_105762931	3300012359	Vadose Zone Soil	SFSITTAKTPFLSSLLIFLHYKSIKGVSCTRTNISIGGNCRTDVPAEVK*
Ga0137385_107246621	3300012359	Vadose Zone Soil	TPFLSSPLISLYHESIKGVSCTRINISTNGDCLVDIPAEVR*
Ga0137385_107787681	3300012359	Vadose Zone Soil	VPYGMSFFVMTAKTPFLSSPLISLRYESVKGVSYTKTDISTNGDCLADIPIKVR*
Ga0137385_107896581	3300012359	Vadose Zone Soil	SSPLISLHHESVKGVSCTRTNISAGGDCLADIPMEVR*
Ga0137385_110360231	3300012359	Vadose Zone Soil	NIWTPCGISLSVITAKAPFLSILLISLYCESVKGVSCTRTNISAGGDCLVDIPAEVR*
Ga0137385_111629041	3300012359	Vadose Zone Soil	PCGMSFSVITTKTPFLSSLLISLYYESIKGVSCTRTDISTGGDCLADIPAEVR*
Ga0137385_116228871	3300012359	Vadose Zone Soil	KTPFLSSPLISLYYKSINGVSYTKTNISTGRDCLINIPVEVR*
Ga0137360_113985871	3300012361	Vadose Zone Soil	TTVKTPFLSSPLISLYYKSVKVVSYTKTNISVGRSYFTDMPTVVR*
Ga0137394_113673281	3300012922	Vadose Zone Soil	AVKTPFLSSLLISLHYKSIKSVSYTRTNISIGRDCLIDVSIEVSIEVSIEVR*
Ga0137359_105664841	3300012923	Vadose Zone Soil	SLSVITVKTPFLSSPLISLHRKSVKGVSYTRTNISIDGDCLADIPVEVR*
Ga0137359_110331611	3300012923	Vadose Zone Soil	LISLRYKSIKRVSCTRTNISIGGDCLADIPAEVR*
Ga0137413_110253201	3300012924	Vadose Zone Soil	CGMSLSITAVKIPFLSSLLISLRYKSVKSISYTRTNISIGGSCLTDIPAEVR*
Ga0137413_110651872	3300012924	Vadose Zone Soil	YGTSLSVTTAKTPFLSSPLISLYCKSVKGVSYTRTDISIGGGCLTDMSAEVSIEVSIEVR
Ga0137413_111624731	3300012924	Vadose Zone Soil	MSLSIITAKTPFLSSPLISLYYKFVKGVSYTRTDISIGGDCLMDMPMEV
Ga0137413_114515011	3300012924	Vadose Zone Soil	KLNIWTPCRTSLSIITVKAPFLSSLLISLRYKPVKGVSYTRTNISIGRGYLIGTPTEVR*
Ga0137419_115681321	3300012925	Vadose Zone Soil	SPLISLRHKSVKGVSYTRTNISIGRDCFTDMPVEVR*
Ga0137419_116902531	3300012925	Vadose Zone Soil	DYVRTKSFLPYRTSLSIITAGISFLSSLLISLRYKSVKGFPYTRTNISVGGDYLTDVSAEVR*
Ga0137419_117263291	3300012925	Vadose Zone Soil	PFLSSPLISLYYKSVKGVSYTRTNISIGGGCLIDISTEVSIEVSTEVR*
Ga0137410_113072291	3300012944	Vadose Zone Soil	SSPLISLYYKSVKGVSYTRTNISIGRSCLIGALVEVR*
Ga0193728_10053022	3300019890	Soil	MSLSVIAVKTPFLSSLLISLHYKSIKGASYTRTDISIGRGYLTDILAEVR
Ga0193728_10286021	3300019890	Soil	MQTPSRMSLSITAVKIPFLSSPLISLYCKSIKSVSYTRTDISIGGSCLIDIPAEVR
Ga0193728_11888631	3300019890	Soil	YGTSLSIITTKTPFLSSPLISLRYKSIKGVSYTRTNISTGRDCLTDIPIEVR
Ga0193728_11954321	3300019890	Soil	MSLSVIVIKIPFLSSLLISLRYKSVKSISYTRTNISIGGSYLID
Ga0193728_12656221	3300019890	Soil	TPFLCSPLISLHYKSVKGVSYTRTNISIGGDCLTDIPAEVR
Ga0193728_12755341	3300019890	Soil	LSSLLISLYYKSVKGVSYTRTNISIDRDCLTDIPTEVR
Ga0193728_13077042	3300019890	Soil	FLSSPLISLYYKSVKGVSYTRTDISIGGDCLTDIPTEVR
Ga0210389_111912251	3300021404	Soil	PFLSSLLISLCHESIKGVSYTRTNISIGGDCFIDMPTEVR
Ga0209588_11552461	3300027671	Vadose Zone Soil	MSLSIITAKTPFLSSPLISLRYKSIKGVSYTRTNISIGGGCLIDISTEVSIEVSTEVR
Ga0209624_104770191	3300027895	Forest Soil	TTAKTPFLSSLLISLHYKSVKGVSYTRTDIFIGGGCFIDIPVEVR
Ga0209624_107175101	3300027895	Forest Soil	KLNIQTPCGTSLSIIIIKTPFLSSLLISLYYKSINGVFYTRTNISTSGDCLADIPAEVR
Ga0209006_102006931	3300027908	Forest Soil	FIIIAKIPFLSSLLISLYYKSINRVFCTRTNISIGGDCLTDIPVEVR
Ga0209006_103370381	3300027908	Forest Soil	ITAKTPFLSSPLISLYYKSINKISYTRTNIFIGGDCLIDIPTKIR
Ga0209006_104555381	3300027908	Forest Soil	SLSIIIAKAPFLSSLLISLSYKSIKGVSCTRTNIFIGRGYLIGTPIEVR
Ga0209006_107777831	3300027908	Forest Soil	MPCGTSLFIITTKTPFLSSLLISLYYKSVKGVSYTRTNIFIGGDCLMDIPV
Ga0209006_108500251	3300027908	Forest Soil	SVITAKIPFLSSPLISLCCKSINGVSYIRTNIFIGKDCLADISTEVG
Ga0209006_111473501	3300027908	Forest Soil	PLISLYYKSVNRVSYTRTNISIGKNYLTDIPAEVR
Ga0209006_113188641	3300027908	Forest Soil	SLLISLYYKSVNRVSYTRTNISIGGDCLTDISAKVR
Ga0307515_1000110062	3300028794	Ectomycorrhiza	MSLSVITAKTPFLSSPLISLRRKSIKGVFYTRTNISAGGDCLADIPADIPIEVR
Ga0307515_100048323	3300028794	Ectomycorrhiza	MSFSIITAKTPFLSSPLISLRRKSVKGFSYTRTDISVGRDCLADIPIEVR
Ga0307515_1000920015	3300028794	Ectomycorrhiza	MSFSVITAKTPFLSSLLISLRHKSVKGVSYTRTNISVGGDCLADIPAEVR
Ga0307515_100161463	3300028794	Ectomycorrhiza	MSLSVITAKTPFLSSPLISLRRKSVKGVSYTRTNIFVGGDYLADIPVEVR
Ga0307515_100228583	3300028794	Ectomycorrhiza	MSLSVITVKTPFLSSPLISLRRKSVKGVSYTRTDISIGGDCLTDIPAEVR
Ga0307515_100233032	3300028794	Ectomycorrhiza	MRTPYGTSFSVITAKMPFLSSPLISLRYKSVKGVSYTKTNIFIGGDYLADIPVEVR
Ga0307515_100301211	3300028794	Ectomycorrhiza	MRTPCGTSFSIITAKTPFLSSPLISLRRESVKGVSYTRTNISIGGDCLADIPIEVR
Ga0307515_100377471	3300028794	Ectomycorrhiza	KTPFLSSPLISLRYKSIKGVSYTRTNISIGGDCFTDMPIEVR
Ga0307515_100453351	3300028794	Ectomycorrhiza	MSLSIITVKTPFLSSLLISLRYKSVKGVSYTRTNIFIGGVCFTGTPIK
Ga0307515_100454511	3300028794	Ectomycorrhiza	MSLSIITIKTPFLSSPLISLRYKSVKEVFYIKTNISIGGSYLTDMPVEVR
Ga0307515_101096671	3300028794	Ectomycorrhiza	FSVITAKTPFLSSPLISLRYKSVKGVSYTRTNISIGGDCLADIPTEVR
Ga0307515_101106611	3300028794	Ectomycorrhiza	TPYGTSLSVITAKTPFLSSPLISLRYKSVNGVSYTRTNISIGGGCLTDISIEVR
Ga0307515_102485941	3300028794	Ectomycorrhiza	VTIIKTPFLSSPLISLHRKSVKGVSYTRTNISVGGDCLADIPTEVR
Ga0307515_107110811	3300028794	Ectomycorrhiza	TPFLSSPLISLRRKSINGVSYTRTNISIGGSCLTDIPTEVK
Ga0307515_108768901	3300028794	Ectomycorrhiza	IKMPFLSSLLISLRYKSVKGVFYTRTNISIGGDCFIDIPIEVR
Ga0307507_100052397	3300033179	Ectomycorrhiza	MSFSVITAKMPFLSSPLISLRHKSVKGGSYTRTNISAGGGYLTDVPAEVR
Ga0307507_100063866	3300033179	Ectomycorrhiza	MSLSVIIAKIPFLSSPLISLRHKSVKGVSYTRTDISAGRDCFVDMPIEVKWFSITGFL
Ga0307507_100203803	3300033179	Ectomycorrhiza	MSLSIITAKTPFLSSLLISLRYKSIKGVSCTRTDISTGRDCLADIPAEVR
Ga0307507_102574311	3300033179	Ectomycorrhiza	SVIIAKIPFLSSPLISLRHKSIKGVSYIRTNISIGRDYFIDMPAEIK
Ga0307507_103726281	3300033179	Ectomycorrhiza	PFLSSLLISLYYKSVKGVFYTRTNISVGGSYLIDVPAEVR
Ga0307507_103881191	3300033179	Ectomycorrhiza	SSPLISLHYKSVKGVSYTRTDISAGRDCLVDIPAEVR
Ga0307507_104412642	3300033179	Ectomycorrhiza	TPFLSSPLIFLRYKSIKGVSYTRADISVGGDCLTDIPAEVK
Ga0307507_104521021	3300033179	Ectomycorrhiza	IQTPYRTSLSIITTKTPFLSSPLISLRYKSVKGVSYTKTNISVNRSYLTDVPAEVR
Ga0307507_105552981	3300033179	Ectomycorrhiza	CGTSFSVITAKIPFLSSLLISLYYKSVKGVSYTRTNIFVGGDCLADIPTEVR
Ga0307507_105628821	3300033179	Ectomycorrhiza	KTPFLSSPLISLRYKSVKGVSYTRTNIFIGGDCFADMPMEVR
Ga0307507_105641761	3300033179	Ectomycorrhiza	TPFLNSPLISLCYKSIKGVFYTRTNISIGEDCLTDMPAEVR
Ga0307507_105967101	3300033179	Ectomycorrhiza	LSIITAKTPFLSSLLIFLRYKSIKGVSYTRTNISVGEDCLTDISAEVR
Ga0307507_106192061	3300033179	Ectomycorrhiza	MSLFVTTAKTPFLSSLLIFLHYKSIKGVSCIKTDIFTGGDCFVDMPAKVR
Ga0307507_106360151	3300033179	Ectomycorrhiza	KTPFLSSPLISLRYKSIKVVSYTRTDISIGRGYLTDMFTEVR
Ga0307507_106395791	3300033179	Ectomycorrhiza	LSITIAKTPFLSSPLISLHYKSVKGVSYTRTDISIGGDCLADIPTEVR
Ga0307507_106458121	3300033179	Ectomycorrhiza	AKTPFLSSPLISLRLKSVKGFSYTITNISVGGGCLTDMLAEVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102950

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences