NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F102959

Metagenome Family F102959

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F102959
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 48 residues
Representative Sequence MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Number of Associated Samples 72
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 67.33 %
% of genes near scaffold ends (potentially truncated) 49.50 %
% of genes from short scaffolds (< 2000 bps) 94.06 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (67.327 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(49.505 % of family members)
Environment Ontology (ENVO) Unclassified
(67.327 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(68.317 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 81.25%    β-sheet: 0.00%    Coil/Unstructured: 18.75%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF01068DNA_ligase_A_M 5.94
PF00072Response_reg 4.95
PF01152Bac_globin 1.98
PF13414TPR_11 0.99
PF13088BNR_2 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 5.94
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 5.94
COG2346Truncated hemoglobin YjbIInorganic ion transport and metabolism [P] 1.98

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms69.31 %
UnclassifiedrootN/A30.69 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002561|JGI25384J37096_10043417All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1731Open in IMG/M
3300002908|JGI25382J43887_10034076All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2757Open in IMG/M
3300005166|Ga0066674_10104241All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_81318Open in IMG/M
3300005167|Ga0066672_10632074All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium692Open in IMG/M
3300005171|Ga0066677_10032336All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2515Open in IMG/M
3300005172|Ga0066683_10192076All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_81260Open in IMG/M
3300005172|Ga0066683_10355084Not Available909Open in IMG/M
3300005172|Ga0066683_10557340Not Available698Open in IMG/M
3300005172|Ga0066683_10826784Not Available536Open in IMG/M
3300005174|Ga0066680_10157926All Organisms → cellular organisms → Bacteria1421Open in IMG/M
3300005177|Ga0066690_10518362Not Available801Open in IMG/M
3300005179|Ga0066684_10478197All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium837Open in IMG/M
3300005181|Ga0066678_10872091All Organisms → cellular organisms → Bacteria → Acidobacteria590Open in IMG/M
3300005187|Ga0066675_10900367Not Available668Open in IMG/M
3300005435|Ga0070714_101703280Not Available616Open in IMG/M
3300005446|Ga0066686_10547088All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium786Open in IMG/M
3300005447|Ga0066689_10417537All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium839Open in IMG/M
3300005447|Ga0066689_10572491All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium713Open in IMG/M
3300005447|Ga0066689_10765192All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium601Open in IMG/M
3300005450|Ga0066682_10061403All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2301Open in IMG/M
3300005450|Ga0066682_10835600Not Available553Open in IMG/M
3300005454|Ga0066687_10657988All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium623Open in IMG/M
3300005467|Ga0070706_100705692All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium935Open in IMG/M
3300005468|Ga0070707_100485685Not Available1197Open in IMG/M
3300005468|Ga0070707_100800136All Organisms → cellular organisms → Bacteria906Open in IMG/M
3300005536|Ga0070697_100467122All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1100Open in IMG/M
3300005552|Ga0066701_10561716All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300005552|Ga0066701_10950186Not Available509Open in IMG/M
3300005554|Ga0066661_10719276All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium585Open in IMG/M
3300005554|Ga0066661_10947401Not Available503Open in IMG/M
3300005556|Ga0066707_10200524All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1287Open in IMG/M
3300005557|Ga0066704_10395228All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium919Open in IMG/M
3300005560|Ga0066670_10854039Not Available553Open in IMG/M
3300005561|Ga0066699_10899904All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium617Open in IMG/M
3300005568|Ga0066703_10329996Not Available919Open in IMG/M
3300005568|Ga0066703_10859463All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7518Open in IMG/M
3300005586|Ga0066691_10432657All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium784Open in IMG/M
3300006032|Ga0066696_10638404Not Available688Open in IMG/M
3300006034|Ga0066656_11029687Not Available528Open in IMG/M
3300006046|Ga0066652_100568572Not Available1064Open in IMG/M
3300006794|Ga0066658_10216462Not Available1018Open in IMG/M
3300006796|Ga0066665_10313151All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1266Open in IMG/M
3300006796|Ga0066665_11116113All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium601Open in IMG/M
3300006796|Ga0066665_11192570All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7581Open in IMG/M
3300006796|Ga0066665_11450403All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium533Open in IMG/M
3300006854|Ga0075425_101325924All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium816Open in IMG/M
3300007258|Ga0099793_10153065All Organisms → cellular organisms → Bacteria → Acidobacteria1093Open in IMG/M
3300009012|Ga0066710_101316955All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1120Open in IMG/M
3300009012|Ga0066710_102109891Not Available828Open in IMG/M
3300009012|Ga0066710_102592555Not Available729Open in IMG/M
3300009012|Ga0066710_103828624All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium564Open in IMG/M
3300009088|Ga0099830_11323770All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
3300009090|Ga0099827_10221192Not Available1582Open in IMG/M
3300009090|Ga0099827_10646627All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium913Open in IMG/M
3300009137|Ga0066709_101539048All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium957Open in IMG/M
3300010303|Ga0134082_10370977Not Available609Open in IMG/M
3300010337|Ga0134062_10245166All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium832Open in IMG/M
3300012096|Ga0137389_10200585All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1661Open in IMG/M
3300012096|Ga0137389_10301973All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300012096|Ga0137389_10331228All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1293Open in IMG/M
3300012189|Ga0137388_11375688All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium645Open in IMG/M
3300012200|Ga0137382_10997498All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium601Open in IMG/M
3300012201|Ga0137365_10291958All Organisms → cellular organisms → Bacteria1209Open in IMG/M
3300012207|Ga0137381_10217429Not Available1657Open in IMG/M
3300012208|Ga0137376_10694195Not Available878Open in IMG/M
3300012211|Ga0137377_10717593Not Available934Open in IMG/M
3300012349|Ga0137387_10092018All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2101Open in IMG/M
3300012350|Ga0137372_10281413All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1296Open in IMG/M
3300012350|Ga0137372_10320864All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1194Open in IMG/M
3300012357|Ga0137384_11585717All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300012359|Ga0137385_10582346Not Available942Open in IMG/M
3300012361|Ga0137360_10813983All Organisms → cellular organisms → Bacteria → Acidobacteria804Open in IMG/M
3300014154|Ga0134075_10480754All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M
3300017654|Ga0134069_1260507Not Available605Open in IMG/M
3300017659|Ga0134083_10177351All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium872Open in IMG/M
3300018433|Ga0066667_10398114Not Available1112Open in IMG/M
3300018433|Ga0066667_10943223Not Available743Open in IMG/M
3300018433|Ga0066667_11835004All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium550Open in IMG/M
3300018468|Ga0066662_10406652All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1199Open in IMG/M
3300018468|Ga0066662_11346707All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium735Open in IMG/M
3300025922|Ga0207646_10151425All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2092Open in IMG/M
3300025922|Ga0207646_10431576All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1189Open in IMG/M
3300025922|Ga0207646_10572925All Organisms → cellular organisms → Bacteria1014Open in IMG/M
3300026298|Ga0209236_1060048All Organisms → cellular organisms → Bacteria → Acidobacteria1850Open in IMG/M
3300026308|Ga0209265_1026719All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1788Open in IMG/M
3300026322|Ga0209687_1203784Not Available611Open in IMG/M
3300026322|Ga0209687_1275462Not Available527Open in IMG/M
3300026326|Ga0209801_1255546All Organisms → cellular organisms → Bacteria → Acidobacteria658Open in IMG/M
3300026330|Ga0209473_1104149All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1184Open in IMG/M
3300026330|Ga0209473_1164472All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium885Open in IMG/M
3300026331|Ga0209267_1069560All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1541Open in IMG/M
3300026343|Ga0209159_1085865All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1404Open in IMG/M
3300026532|Ga0209160_1096161All Organisms → cellular organisms → Bacteria1513Open in IMG/M
3300026536|Ga0209058_1183130All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium910Open in IMG/M
3300026538|Ga0209056_10137877All Organisms → cellular organisms → Bacteria → Acidobacteria1899Open in IMG/M
3300026538|Ga0209056_10517159All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
3300026552|Ga0209577_10383864All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1019Open in IMG/M
3300027882|Ga0209590_10044991All Organisms → cellular organisms → Bacteria2427Open in IMG/M
3300031720|Ga0307469_12440474Not Available511Open in IMG/M
3300032205|Ga0307472_100149650All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1703Open in IMG/M
3300032205|Ga0307472_101208216Not Available722Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil49.50%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil19.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil12.87%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.95%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.97%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.99%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.99%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.99%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026308Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)EnvironmentalOpen in IMG/M
3300026322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026330Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25384J37096_1004341713300002561Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
JGI25382J43887_1003407633300002908Grasslands SoilLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066674_1010424113300005166SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066672_1063207423300005167SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD*
Ga0066677_1003233633300005171SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR*
Ga0066683_1019207613300005172SoilMIPRNLFPGEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066683_1035508413300005172SoilKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEDRKLAGAT*
Ga0066683_1055734013300005172SoilDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066683_1082678413300005172SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEE
Ga0066680_1015792613300005174SoilMKEIDQVLRSKELELSQVEIEVQSLLIVAELLGEEADQEEARKLAGAT*
Ga0066690_1051836213300005177SoilVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR*
Ga0066684_1047819723300005179SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAGLLGEEADQEEARKLAVHTKLKILTTLT*
Ga0066678_1087209123300005181SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEAR
Ga0066675_1090036723300005187SoilLKEIDQVLCSKELELSQVEVEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0070714_10170328023300005435Agricultural SoilMKEIYQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQ
Ga0066686_1054708813300005446SoilMKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*DSRPLRLRTF
Ga0066689_1041753713300005447SoilLKEIDQVLHSKELELSQVEIEVQSLRIVAELLSEEADQEEARKLAGAT*
Ga0066689_1057249123300005447SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTN*
Ga0066689_1076519223300005447SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQ
Ga0066682_1006140313300005450SoilMKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066682_1083560023300005450SoilHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066687_1065798823300005454SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEE
Ga0070706_10070569213300005467Corn, Switchgrass And Miscanthus RhizosphereMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTKLKI*
Ga0070707_10048568513300005468Corn, Switchgrass And Miscanthus RhizosphereLKELDQVLRSKELELSQVEIEVQSLRIVAELLGEEADREEARKLADAFFFRNQH*
Ga0070707_10080013633300005468Corn, Switchgrass And Miscanthus RhizosphereLRSKELELSQVEIEVQSLRIVAELLGEEPDREEADPEEARSRP*
Ga0070697_10046712223300005536Corn, Switchgrass And Miscanthus RhizosphereMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQN*
Ga0066701_1056171613300005552SoilISWDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTN*
Ga0066701_1095018613300005552SoilSKELELSQVEIEVQSLRIVSELLGEEADQEEARKPGAFDD*
Ga0066661_1071927613300005554SoilDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD*
Ga0066661_1094740113300005554SoilLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEAR
Ga0066707_1020052413300005556SoilLKEIDQVLRSKELELSQVEIEVQSLRIVADLLGEEADQEEARKLAGAT*
Ga0066704_1039522833300005557SoilQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKPAGAT*
Ga0066670_1085403933300005560SoilKELELSQVEIEVQSLRIVAGLLGEEADQEEARKLAVHTKLKILTTLT*
Ga0066699_1089990423300005561SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD*
Ga0066703_1032999623300005568SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKPAGAT*
Ga0066703_1085946313300005568SoilRSKELELSQVEIEVQSLRIVADLLEEADREEGRKLAGHESTV*
Ga0066691_1043265713300005586SoilWDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066696_1063840423300006032SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEADQEEARKLAGAI*
Ga0066656_1102968713300006034SoilLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAD
Ga0066652_10056857223300006046SoilLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEAADQEEADQEEARKLAGAI*
Ga0066658_1021646213300006794SoilQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066665_1031315123300006796SoilLKEVYQVLSSKEVELSQVEIEVQSLRIVSELLGEEADQEEARKLAGAI*
Ga0066665_1111611313300006796SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARK
Ga0066665_1119257013300006796SoilMKEIDQVLRSKELELSQVEIEVQSLRIVADLLEEADREEGRKLAGHESTV*
Ga0066665_1145040323300006796SoilMKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQE
Ga0075425_10132592423300006854Populus RhizosphereLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLVVRYQN*
Ga0099793_1015306523300007258Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEACKLAGAI*
Ga0066710_10131695523300009012Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRVVAELLGEEADQEEARKLAGAT
Ga0066710_10210989113300009012Grasslands SoilQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR
Ga0066710_10259255523300009012Grasslands SoilMKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEDRKLAGAT
Ga0066710_10382862413300009012Grasslands SoilQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0099830_1132377013300009088Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAKLLGEEADQEEARKLAGAT*
Ga0099827_1022119213300009090Vadose Zone SoilQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0099827_1064662723300009090Vadose Zone SoilLKEIYQVLSSKEVELSQVEIEVQSLRIVSELLGEEADQEEARKLAGAI*
Ga0066709_10153904823300009137Grasslands SoilLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAGKLAGAT*
Ga0134082_1037097723300010303Grasslands SoilILKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0134062_1024516623300010337Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAD
Ga0137389_1020058543300012096Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQKE
Ga0137389_1030197343300012096Vadose Zone SoilLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD*
Ga0137389_1033122843300012096Vadose Zone SoilRSKELELSQVEIEVQSLRIVAELLGEEADQKEARKLAGAT*
Ga0137388_1137568823300012189Vadose Zone SoilWDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADREEVRKLAGAFDTC*
Ga0137382_1099749813300012200Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAHKLAVRYQD*
Ga0137365_1029195813300012201Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQ
Ga0137381_1021742913300012207Vadose Zone SoilISWDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAEMLGEEADQEEARKLALRTN*
Ga0137376_1069419513300012208Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAGKLAGAT*
Ga0137377_1071759313300012211Vadose Zone SoilGDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0137387_1009201823300012349Vadose Zone SoilMKEIDQVLRSKELELSLVEIEAQSLRIVAELLEEADREEAKPGAFDACC*
Ga0137372_1028141313300012350Vadose Zone SoilIDQVLRSKELELSQVEIEVQSLLIVAELLGEEADQEEARKLAGAT*
Ga0137372_1032086413300012350Vadose Zone SoilMKEIDQVLRYIDLVRSQVEIELQSWLNVADLLDEEADQEEAR
Ga0137384_1158571713300012357Vadose Zone SoilRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD*
Ga0137385_1058234613300012359Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEA
Ga0137360_1081398323300012361Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQE
Ga0134075_1048075423300014154Grasslands SoilWDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQN*
Ga0134069_126050713300017654Grasslands SoilLKEIDQVLCSKELELSQVEVEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0134083_1017735123300017659Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVLYQN
Ga0066667_1039811423300018433Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0066667_1094322323300018433Grasslands SoilLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAGKLAGAT
Ga0066667_1183500423300018433Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD
Ga0066662_1040665213300018468Grasslands SoilMEIDQALRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0066662_1134670723300018468Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTN
Ga0207646_1015142523300025922Corn, Switchgrass And Miscanthus RhizosphereLKELDQVLRSKELELSQVEIEVQSLRIVAELLGEEADREEARKLADAFFFRNQH
Ga0207646_1043157613300025922Corn, Switchgrass And Miscanthus RhizosphereAPGEIILKEIYQVLRSKELELSQVEVEVQSLRIVAELVGEEADQEEARKLAVRYQD
Ga0207646_1057292513300025922Corn, Switchgrass And Miscanthus RhizosphereMKEIYQVLRSKELELSQVEIEVQSLRIVAELLGEEPDREEADPEEARSRP
Ga0209236_106004823300026298Grasslands SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI
Ga0209265_102671923300026308SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR
Ga0209687_120378413300026322SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEADQEEARKLAGAI
Ga0209687_127546213300026322SoilLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEARKL
Ga0209801_125554623300026326SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLEEADQEEARKLAGAI
Ga0209473_110414923300026330SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAGLLGEEADQEEARKLAVHTKLKILTTLT
Ga0209473_116447243300026330SoilKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEARKLAGAI
Ga0209267_106956033300026331SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKL
Ga0209159_108586523300026343SoilMKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0209160_109616113300026532SoilLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKPAGAT
Ga0209058_118313013300026536SoilLKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAT
Ga0209056_1013787713300026538SoilMKEIDQVLRSKELELSQVEIEVQSLRIVADLLEEADREEGRKLAGHESTV
Ga0209056_1051715913300026538SoilLKEVYQVLSSKEVELSQVEIEVQSLRIVSELLGEEADQEEARKLAGAI
Ga0209577_1038386413300026552SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEE
Ga0209590_1004499123300027882Vadose Zone SoilMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD
Ga0307469_1244047413300031720Hardwood Forest SoilMKEIYQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD
Ga0307472_10014965053300032205Hardwood Forest SoilMKEIHQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQN
Ga0307472_10120821613300032205Hardwood Forest SoilRSKELELSQVEIEVQSLRIVAELLGEEADQEEADREEARSRP

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.