Metagenome Family F103094

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103094
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	58 residues
Representative Sequence	MKKPEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH
Number of Associated Samples	66
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	92.08 %
% of genes near scaffold ends (potentially truncated)	13.86 %
% of genes from short scaffolds (< 2000 bps)	74.26 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.465 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (42.574 % of family members)
Environment Ontology (ENVO)	Unclassified (74.257 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (94.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 52.54% Coil/Unstructured: 47.46%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00589	Phage_integrase	8.91
PF13662	Toprim_4	2.97
PF00145	DNA_methylase	0.99
PF02511	Thy1	0.99
PF07835	COX4_pro_2	0.99
PF01476	LysM	0.99
PF07719	TPR_2	0.99
PF13759	2OG-FeII_Oxy_5	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.99
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
All Organisms	root	All Organisms	46.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Viruses	superkingdom	All Organisms → Viruses	43.56 %
cellular organisms	root	All Organisms → cellular organisms	2.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.97 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.97 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.97 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.97 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000115\|DelMOSum2011_c10071367	All Organisms → Viruses → Predicted Viral	1249	Open in IMG/M
3300002176\|JGI24820J26691_1025023	All Organisms → Viruses → Predicted Viral	1340	Open in IMG/M
3300002176\|JGI24820J26691_1026877	All Organisms → Viruses → Predicted Viral	1273	Open in IMG/M
3300002176\|JGI24820J26691_1069513	Not Available	695	Open in IMG/M
3300004097\|Ga0055584_100935287	Not Available	907	Open in IMG/M
3300005404\|Ga0066856_10013601	All Organisms → Viruses → Predicted Viral	3474	Open in IMG/M
3300005404\|Ga0066856_10024212	All Organisms → Viruses → Predicted Viral	2638	Open in IMG/M
3300006024\|Ga0066371_10064482	All Organisms → Viruses → Predicted Viral	1068	Open in IMG/M
3300006735\|Ga0098038_1039346	All Organisms → Viruses → Predicted Viral	1739	Open in IMG/M
3300006735\|Ga0098038_1119179	Not Available	898	Open in IMG/M
3300006735\|Ga0098038_1255776	Not Available	552	Open in IMG/M
3300006737\|Ga0098037_1037793	All Organisms → Viruses → Predicted Viral	1765	Open in IMG/M
3300006737\|Ga0098037_1076274	All Organisms → Viruses → Predicted Viral	1181	Open in IMG/M
3300006737\|Ga0098037_1078873	All Organisms → Viruses → Predicted Viral	1158	Open in IMG/M
3300006737\|Ga0098037_1237086	Not Available	588	Open in IMG/M
3300006749\|Ga0098042_1093023	Not Available	770	Open in IMG/M
3300006929\|Ga0098036_1140888	Not Available	738	Open in IMG/M
3300007963\|Ga0110931_1107091	Not Available	843	Open in IMG/M
3300009550\|Ga0115013_10004315	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7673	Open in IMG/M
3300009550\|Ga0115013_10183779	Not Available	1243	Open in IMG/M
3300009550\|Ga0115013_10594999	Not Available	737	Open in IMG/M
3300009593\|Ga0115011_10365710	All Organisms → Viruses → Predicted Viral	1114	Open in IMG/M
3300009593\|Ga0115011_10470652	Not Available	992	Open in IMG/M
3300009593\|Ga0115011_10720518	Not Available	818	Open in IMG/M
3300009593\|Ga0115011_11507953	Not Available	594	Open in IMG/M
3300009593\|Ga0115011_11655192	Not Available	572	Open in IMG/M
3300010148\|Ga0098043_1058826	All Organisms → Viruses → Predicted Viral	1163	Open in IMG/M
3300010148\|Ga0098043_1146500	Not Available	670	Open in IMG/M
3300012919\|Ga0160422_10133668	All Organisms → Viruses → Predicted Viral	1478	Open in IMG/M
3300012919\|Ga0160422_10501314	Not Available	764	Open in IMG/M
3300012919\|Ga0160422_10800865	Not Available	605	Open in IMG/M
3300012928\|Ga0163110_11284123	Not Available	590	Open in IMG/M
3300012928\|Ga0163110_11716760	Not Available	512	Open in IMG/M
3300012952\|Ga0163180_10215784	All Organisms → Viruses → Predicted Viral	1319	Open in IMG/M
3300012952\|Ga0163180_10636181	Not Available	816	Open in IMG/M
3300012953\|Ga0163179_11299136	Not Available	647	Open in IMG/M
3300012954\|Ga0163111_10246046	All Organisms → Viruses → Predicted Viral	1566	Open in IMG/M
3300017697\|Ga0180120_10032435	All Organisms → Viruses → Predicted Viral	2407	Open in IMG/M
3300017720\|Ga0181383_1185015	Not Available	555	Open in IMG/M
3300017730\|Ga0181417_1012822	All Organisms → Viruses → Predicted Viral	2143	Open in IMG/M
3300017740\|Ga0181418_1008288	All Organisms → Viruses → Predicted Viral	2879	Open in IMG/M
3300017740\|Ga0181418_1077141	Not Available	815	Open in IMG/M
3300017741\|Ga0181421_1082053	Not Available	843	Open in IMG/M
3300017757\|Ga0181420_1012928	All Organisms → Viruses → Predicted Viral	2821	Open in IMG/M
3300017764\|Ga0181385_1037390	All Organisms → Viruses → Predicted Viral	1526	Open in IMG/M
3300017781\|Ga0181423_1227516	Not Available	701	Open in IMG/M
3300020278\|Ga0211606_1003079	Not Available	5472	Open in IMG/M
3300020278\|Ga0211606_1007252	All Organisms → Viruses → Predicted Viral	2933	Open in IMG/M
3300020280\|Ga0211591_1099297	Not Available	607	Open in IMG/M
3300020282\|Ga0211667_1000024	All Organisms → cellular organisms → Bacteria	56468	Open in IMG/M
3300020306\|Ga0211616_1060558	Not Available	554	Open in IMG/M
3300020325\|Ga0211507_1042507	Not Available	901	Open in IMG/M
3300020336\|Ga0211510_1029072	All Organisms → Viruses → Predicted Viral	1421	Open in IMG/M
3300020341\|Ga0211592_1073472	Not Available	713	Open in IMG/M
3300020355\|Ga0211598_1001336	All Organisms → cellular organisms → Bacteria	11411	Open in IMG/M
3300020360\|Ga0211712_10083636	Not Available	786	Open in IMG/M
3300020367\|Ga0211703_10123331	Not Available	661	Open in IMG/M
3300020386\|Ga0211582_10386551	Not Available	522	Open in IMG/M
3300020393\|Ga0211618_10299165	Not Available	536	Open in IMG/M
3300020401\|Ga0211617_10031048	All Organisms → Viruses → Predicted Viral	2269	Open in IMG/M
3300020401\|Ga0211617_10090800	All Organisms → Viruses → Predicted Viral	1276	Open in IMG/M
3300020404\|Ga0211659_10051618	All Organisms → Viruses → Predicted Viral	1946	Open in IMG/M
3300020409\|Ga0211472_10093848	All Organisms → Viruses → Predicted Viral	1181	Open in IMG/M
3300020414\|Ga0211523_10251407	Not Available	728	Open in IMG/M
3300020419\|Ga0211512_10021152	All Organisms → Viruses → Predicted Viral	3299	Open in IMG/M
3300020430\|Ga0211622_10339216	Not Available	644	Open in IMG/M
3300020436\|Ga0211708_10334883	Not Available	618	Open in IMG/M
3300020437\|Ga0211539_10347055	Not Available	617	Open in IMG/M
3300020446\|Ga0211574_10242757	Not Available	780	Open in IMG/M
3300020457\|Ga0211643_10196491	Not Available	992	Open in IMG/M
3300020459\|Ga0211514_10454333	Not Available	630	Open in IMG/M
3300020460\|Ga0211486_10070967	All Organisms → Viruses → Predicted Viral	1589	Open in IMG/M
3300020463\|Ga0211676_10006931	Not Available	10218	Open in IMG/M
3300020463\|Ga0211676_10415710	Not Available	732	Open in IMG/M
3300020471\|Ga0211614_10175355	Not Available	925	Open in IMG/M
3300020471\|Ga0211614_10292464	Not Available	713	Open in IMG/M
3300020472\|Ga0211579_10046357	All Organisms → Viruses → Predicted Viral	2712	Open in IMG/M
3300025086\|Ga0208157_1122829	Not Available	601	Open in IMG/M
3300025101\|Ga0208159_1050434	Not Available	864	Open in IMG/M
3300025101\|Ga0208159_1070223	Not Available	679	Open in IMG/M
3300025102\|Ga0208666_1078023	Not Available	858	Open in IMG/M
3300025102\|Ga0208666_1093651	Not Available	751	Open in IMG/M
3300025128\|Ga0208919_1074831	All Organisms → Viruses → Predicted Viral	1119	Open in IMG/M
3300026292\|Ga0208277_1030472	All Organisms → Viruses → Predicted Viral	2446	Open in IMG/M
3300026292\|Ga0208277_1046538	All Organisms → Viruses → Predicted Viral	1825	Open in IMG/M
3300027774\|Ga0209433_10010821	All Organisms → Viruses → Predicted Viral	2920	Open in IMG/M
3300027774\|Ga0209433_10016515	All Organisms → Viruses → Predicted Viral	2431	Open in IMG/M
3300027774\|Ga0209433_10056779	All Organisms → Viruses → Predicted Viral	1404	Open in IMG/M
3300027774\|Ga0209433_10071911	All Organisms → Viruses → Predicted Viral	1257	Open in IMG/M
3300027859\|Ga0209503_10005357	Not Available	5839	Open in IMG/M
3300027859\|Ga0209503_10011828	All Organisms → Viruses → Predicted Viral	3860	Open in IMG/M
3300027859\|Ga0209503_10103387	All Organisms → Viruses → Predicted Viral	1333	Open in IMG/M
3300027906\|Ga0209404_10004946	Not Available	7597	Open in IMG/M
3300027906\|Ga0209404_10086220	All Organisms → Viruses → Predicted Viral	1836	Open in IMG/M
3300029309\|Ga0183683_1000414	All Organisms → cellular organisms → Bacteria	23779	Open in IMG/M
3300031773\|Ga0315332_10462121	Not Available	804	Open in IMG/M
3300031774\|Ga0315331_10020242	All Organisms → Viruses → Predicted Viral	4920	Open in IMG/M
3300031774\|Ga0315331_10027298	All Organisms → Viruses → Predicted Viral	4226	Open in IMG/M
3300031774\|Ga0315331_10443320	Not Available	946	Open in IMG/M
3300032011\|Ga0315316_10041235	All Organisms → Viruses → Predicted Viral	3652	Open in IMG/M
3300032073\|Ga0315315_10095287	All Organisms → Viruses → Predicted Viral	2767	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	51.49%
Unclassified	Environmental → Aquatic → Marine → Unclassified	31.68%
Strait	Environmental → Aquatic → Marine → Strait	7.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.94%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.98%
Coastal	Environmental → Aquatic → Marine → Coastal	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	45.54%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	31.68%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	7.92%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	5.94%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	42.57%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	31.68%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	7.92%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	5.94%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.97%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	2.97%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	2.97%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.99%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.99%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300002176	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005404	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205	Environmental	Open in IMG/M
3300006024	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300009550	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012952	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300012954	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaG	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017740	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13	Environmental	Open in IMG/M
3300017741	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental	Open in IMG/M
3300020278	Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)	Environmental	Open in IMG/M
3300020280	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)	Environmental	Open in IMG/M
3300020282	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)	Environmental	Open in IMG/M
3300020306	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)	Environmental	Open in IMG/M
3300020325	Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966)	Environmental	Open in IMG/M
3300020336	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)	Environmental	Open in IMG/M
3300020341	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555908-ERR599066)	Environmental	Open in IMG/M
3300020355	Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556077-ERR598988)	Environmental	Open in IMG/M
3300020360	Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)	Environmental	Open in IMG/M
3300020367	Marine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)	Environmental	Open in IMG/M
3300020386	Marine microbial communities from Tara Oceans - TARA_B100000609 (ERX555990-ERR599038)	Environmental	Open in IMG/M
3300020393	Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556105-ERR599054)	Environmental	Open in IMG/M
3300020401	Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)	Environmental	Open in IMG/M
3300020404	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)	Environmental	Open in IMG/M
3300020409	Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)	Environmental	Open in IMG/M
3300020414	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)	Environmental	Open in IMG/M
3300020419	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020436	Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)	Environmental	Open in IMG/M
3300020437	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)	Environmental	Open in IMG/M
3300020446	Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020459	Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)	Environmental	Open in IMG/M
3300020460	Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)	Environmental	Open in IMG/M
3300020463	Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)	Environmental	Open in IMG/M
3300020471	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)	Environmental	Open in IMG/M
3300020472	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025101	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300026292	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 (SPAdes)	Environmental	Open in IMG/M
3300027774	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)	Environmental	Open in IMG/M
3300027859	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300029309	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_100713675	3300000115	Marine	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTLSH*
JGI24820J26691_10250235	3300002176	Marine	MKSKKLNIEVTLSSENSCYLGIKDYIIYVEVSQATEDKPLVSFWKKGWKDDRAVTLSH*
JGI24820J26691_10268775	3300002176	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATEDKPLVSFWKKGWKDDRAVTLSH*
JGI24820J26691_10695131	3300002176	Marine	VKKPEKLNIEMSISTEHSCYVSIKDYTVYIEVSEATDNKPYISFWKKGWKDDRAVTVSH*
Ga0055584_1009352874	3300004097	Pelagic Marine	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAITLSH*
Ga0066856_100136013	3300005404	Marine	MTKKTPEKLNIEMSISSEHSCYVSVKGYTIYVEVSQATNNKPYISFWKKGWEDDRAITVSH*
Ga0066856_100242123	3300005404	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH*
Ga0066371_100644822	3300006024	Marine	MTKKIPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH*
Ga0098038_10393468	3300006735	Marine	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNNKPYVSFWKKGWEDDRAVTLSH*
Ga0098038_11191793	3300006735	Marine	MKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAITVSH*
Ga0098038_12557762	3300006735	Marine	MTKKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRAVTLSH*
Ga0098037_10377937	3300006737	Marine	MTKKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAITVSH*
Ga0098037_10762742	3300006737	Marine	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTLSH*
Ga0098037_10788734	3300006737	Marine	MKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTLSH*
Ga0098037_12370862	3300006737	Marine	MKNEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRAVTVSH*
Ga0098042_10930233	3300006749	Marine	MTKKAPEKLNIEMSISSEHSCYVSVKGYTIYVEVSQATNNKPYISFWKKGWEDDRAVTLSH*
Ga0098036_11408882	3300006929	Marine	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTLSH*
Ga0110931_11070912	3300007963	Marine	MKNEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNNKPYVSFWKKGWEDDRAVTLSH*
Ga0115013_100043154	3300009550	Marine	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWQDDRAVTVSH*
Ga0115013_101837792	3300009550	Marine	MTKKIPEKLNIEVSLSSENSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRATTVSH*
Ga0115013_105949993	3300009550	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWQDDRAVTLSH*
Ga0115011_103657102	3300009593	Marine	MTKKVPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTVSH*
Ga0115011_104706523	3300009593	Marine	MTKKIPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTVSH*
Ga0115011_107205183	3300009593	Marine	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRSTTVSH*
Ga0115011_115079532	3300009593	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTVSH*
Ga0115011_116551922	3300009593	Marine	MTKKAPNKLNIEVSLSSENSCYVSVKDYTIYVEVSRATNDKPYISFWKKGWEDDRAVTVSH*
Ga0098043_10588263	3300010148	Marine	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNNKPYISFWKKGWEDDRAVTLSH*
Ga0098043_11465001	3300010148	Marine	MTKKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKG
Ga0160422_101336686	3300012919	Seawater	MQKAPEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWEDDRAVTVSH
Ga0160422_105013143	3300012919	Seawater	KLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWDDDRAITLSH*
Ga0160422_108008652	3300012919	Seawater	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWDNDRTVTLSH*
Ga0163110_112841231	3300012928	Surface Seawater	IEMSISSEHSCHVSVKDYTIYVEVSQATNNEPYISFWKKGWENDRAVTLSH*
Ga0163110_117167602	3300012928	Surface Seawater	MKKPEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH*
Ga0163180_102157844	3300012952	Seawater	MKSEKLNIEVSLSSENSCYVSVKDYTIYVEVSQATNDKPYISFWKKGLNDDRSTTVSH*
Ga0163180_106361812	3300012952	Seawater	MKKPEKLNIEVSLSSENSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRSTTVSH*
Ga0163179_112991363	3300012953	Seawater	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVT
Ga0163111_102460465	3300012954	Surface Seawater	MKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH*
Ga0180120_100324357	3300017697	Freshwater To Marine Saline Gradient	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTLS
Ga0181383_11850152	3300017720	Seawater	MKSEKLNIEVTLSSDNSCYLGIKDYIIYVEVSQATDNKPLVSFWKRGAKDDRAITRSH
Ga0181417_10128222	3300017730	Seawater	MTKKATEKLNIEVTLSSDNSCYLGIKDYIIYVEVSQATENKPLVSFWKKGAKDDRAITRS
Ga0181418_10082887	3300017740	Seawater	MTKKAPEKLNIEMSISNEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTLS
Ga0181418_10771413	3300017740	Seawater	MKSEKLNIEVTLSSDNSCYLGIKDYIIYVEVSQATDNKPLVSFWKRGAKDDRAVTVSH
Ga0181421_10820531	3300017741	Seawater	MTKKAPEKLNIEVALSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRAVTLS
Ga0181420_10129287	3300017757	Seawater	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNNKPYVSFWKKGWEDDRAVTLS
Ga0181385_10373902	3300017764	Seawater	MTEIKTEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNNKPYISFWKKGWQDDRAITLS
Ga0181423_12275161	3300017781	Seawater	MTKKAPEKLNIEMSISSEHSCYVSVKGYTIYVEVSQATNNKPYISFWKKGWEDDRAVTLS
Ga0211606_100307910	3300020278	Marine	LNIEMSISSEHSCYVSVKDYAIYVEVSEATNNKPYISFWKKGWEDDRVVTLSH
Ga0211606_10072521	3300020278	Marine	MVKKAPEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATEDKPLVSFWKKGWKDDRAVTLS
Ga0211591_10992972	3300020280	Marine	MKSEKLNIEMSISSEHSCYVSVKDYAIYVEVSEATNNKPYISFWKKGWEDDRAVTLSH
Ga0211667_100002457	3300020282	Marine	MVKKAPEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWKDDRAITLS
Ga0211616_10605582	3300020306	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATDNKPLVSFWKKGWDDDRAVTVSH
Ga0211507_10425072	3300020325	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWDDDRTVTLSH
Ga0211510_10290725	3300020336	Marine	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTVS
Ga0211592_10734722	3300020341	Marine	MKSEKLNIEMSISSEHSCYVSVKDYAIYVEVSEATNNKPYISFWKKGWEDDRVVTLSH
Ga0211598_100133621	3300020355	Marine	PEKLNIEMSISTEHSCYVSIKDYTVYIEVSEATNNKPYISFWKKGWEDDRAVTLSH
Ga0211712_100836363	3300020360	Marine	MTKKATEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWQDDRAVTVS
Ga0211703_101233312	3300020367	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSKATGDKPLVSFWKKGWDDDRAVTVSH
Ga0211582_103865513	3300020386	Marine	VKKPEKLNIEMSISSEHSCYVSVKDYIIYVEVSQATEDKPLVSFWKKGWK
Ga0211618_102991652	3300020393	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWDDDRAVTLSH
Ga0211617_100310484	3300020401	Marine	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGLNDDRSTTVSH
Ga0211617_100908003	3300020401	Marine	MQKAPEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWDDDRTVTLSH
Ga0211659_100516182	3300020404	Marine	MAKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTLS
Ga0211472_100938481	3300020409	Marine	EVSLSSEHSCYVSVKDYMIYVEVSKATNDKPYISFWKKGWEDDRAITVSH
Ga0211523_102514073	3300020414	Marine	MQKAPEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWEDDRTVTLSH
Ga0211512_100211525	3300020419	Marine	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAITLS
Ga0211622_103392162	3300020430	Marine	VKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSEATNNKPYISFWKKGWEDDRAVTLSH
Ga0211708_103348832	3300020436	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSKATGDKPLVSFWKKGWDDDRAVTLSH
Ga0211539_103470552	3300020437	Marine	LNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGLNDDRAVTVSH
Ga0211574_102427572	3300020446	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRAITVSH
Ga0211643_101964913	3300020457	Marine	MSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGTKDDRAVTLSH
Ga0211514_104543332	3300020459	Marine	MKKPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAITLSH
Ga0211486_100709675	3300020460	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYMIYVEVSKATNDKPYISFWKKGWEDDRAITVSH
Ga0211676_1000693112	3300020463	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRSVTLSH
Ga0211676_104157102	3300020463	Marine	MTKKKPEKLNIEMSISSEHSCYVSVKNYTIYVEVSKATNDKPYISFWKKGWEDDRAITLS
Ga0211614_101753552	3300020471	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYMIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH
Ga0211614_102924643	3300020471	Marine	MKKAPEKLNIEVTLSSENSCYVSVKDYMIYVEVSQATNDKPYISFWKKGWEDDRAITVSH
Ga0211579_100463579	3300020472	Marine	MTKKATEKLNIEVTLSSDNSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWQDDRAITRS
Ga0208157_11228292	3300025086	Marine	MKNEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRAVTVSH
Ga0208159_10504343	3300025101	Marine	MKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTLSH
Ga0208159_10702231	3300025101	Marine	MTKKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAITVS
Ga0208666_10780233	3300025102	Marine	MKKPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAITVSH
Ga0208666_10936511	3300025102	Marine	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNNKPYVSFWKKGWED
Ga0208919_10748314	3300025128	Marine	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTLS
Ga0208277_10304726	3300026292	Marine	MTKKTPEKLNIEMSISSEHSCYVSVKGYTIYVEVSQATNNKPYISFWKKGWEDDRAITVS
Ga0208277_10465382	3300026292	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWEDDRAVTVSH
Ga0209433_100108213	3300027774	Marine	VKKPEKLNIEMSISTEHSCYVSIKDYTVYIEVSEATDNKPYISFWKKGWKDDRAVTVSH
Ga0209433_100165153	3300027774	Marine	MKSKKLNIEVTLSSENSCYLGIKDYIIYVEVSQATEDKPLVSFWKKGWKDDRAVTLSH
Ga0209433_100567795	3300027774	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATEDKPLVSFWKKGWKDDRAVTLSH
Ga0209433_100719111	3300027774	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVS
Ga0209503_100053578	3300027859	Marine	MKSEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWQDDRAVTLSH
Ga0209503_1001182810	3300027859	Marine	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWQDDRAITRSH
Ga0209503_101033874	3300027859	Marine	MTKKIPEKLNIEVSLSSENSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRATTVS
Ga0209404_1000494614	3300027906	Marine	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTVSH
Ga0209404_100862205	3300027906	Marine	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRSTTVSH
Ga0183683_100041425	3300029309	Marine	MAKKAHEKLNIEVALSSEHSCYVSVKGYTIYVEVSEATNNKPYISFWKKGWKDDRAVTLS
Ga0315332_104621214	3300031773	Seawater	KLNIEMSISSEHSCYVSVKDYTIYVEVSQATNNKPYISFWKKGGEDDRAITLSH
Ga0315331_1002024210	3300031774	Seawater	MTKKAPEKLNIEMSISSEHSCYVSVKDYTIYVEVSQATNNKPYISFWKKGGEDDRAITLS
Ga0315331_1002729810	3300031774	Seawater	MKSEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNNKPYISFWKKGWEDDRAVTVSH
Ga0315331_104433203	3300031774	Seawater	MKSEKLNIEVTLSSDNSCYLGIKDYIIYVEVSQATENKPLVSFWKKGAKDDRAITRSH
Ga0315316_100412352	3300032011	Seawater	MTKKTPEKLNIEMSISSEHSCYVSVKGYTIYVEVSQATNNKPYISFWKKGWEDDRAVTLS
Ga0315315_100952871	3300032073	Seawater	MTKKAPEKLNIEVALSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRAITLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103094

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences