NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103230

Metagenome Family F103230

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103230
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 52 residues
Representative Sequence MIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNII
Number of Associated Samples 83
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 98.02 %
% of genes near scaffold ends (potentially truncated) 99.01 %
% of genes from short scaffolds (< 2000 bps) 89.11 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (82.178 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(16.832 % of family members)
Environment Ontology (ENVO) Unclassified
(52.475 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(52.475 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.75%    β-sheet: 7.50%    Coil/Unstructured: 58.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF03851UvdE 0.99
PF01592NifU_N 0.99
PF14338Mrr_N 0.99
PF14020DUF4236 0.99
PF05315ICEA 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0822Fe-S cluster assembly scaffold protein IscU, NifU familyPosttranslational modification, protein turnover, chaperones [O] 0.99
COG4294UV DNA damage repair endonucleaseReplication, recombination and repair [L] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A82.18 %
All OrganismsrootAll Organisms17.82 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003616|JGI25928J51866_1017549All Organisms → Viruses → Predicted Viral2010Open in IMG/M
3300005528|Ga0068872_10294825Not Available901Open in IMG/M
3300005580|Ga0049083_10298103Not Available539Open in IMG/M
3300005585|Ga0049084_10192001Not Available700Open in IMG/M
3300005662|Ga0078894_11658744Not Available526Open in IMG/M
3300005662|Ga0078894_11751859Not Available508Open in IMG/M
3300005805|Ga0079957_1360674Not Available632Open in IMG/M
3300006484|Ga0070744_10178454Not Available606Open in IMG/M
3300006484|Ga0070744_10242285Not Available510Open in IMG/M
3300006641|Ga0075471_10625603Not Available527Open in IMG/M
3300007548|Ga0102877_1200351Not Available562Open in IMG/M
3300007560|Ga0102913_1011779All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1022868Open in IMG/M
3300007618|Ga0102896_1159582Not Available719Open in IMG/M
3300007622|Ga0102863_1175516Not Available630Open in IMG/M
3300007622|Ga0102863_1189562Not Available605Open in IMG/M
3300007627|Ga0102869_1120771Not Available711Open in IMG/M
3300007636|Ga0102856_1008789All Organisms → Viruses → Predicted Viral1379Open in IMG/M
3300007636|Ga0102856_1050088Not Available659Open in IMG/M
3300007639|Ga0102865_1247437Not Available531Open in IMG/M
3300007649|Ga0102912_1228836Not Available533Open in IMG/M
3300007861|Ga0105736_1035503Not Available964Open in IMG/M
3300007861|Ga0105736_1100383Not Available627Open in IMG/M
3300007954|Ga0105739_1038048All Organisms → Viruses → Predicted Viral1026Open in IMG/M
3300007972|Ga0105745_1142581Not Available730Open in IMG/M
3300007973|Ga0105746_1122118Not Available866Open in IMG/M
3300008107|Ga0114340_1161332Not Available811Open in IMG/M
3300008113|Ga0114346_1260276Not Available636Open in IMG/M
3300008119|Ga0114354_1154671Not Available849Open in IMG/M
3300008259|Ga0114841_1039847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1024084Open in IMG/M
3300008261|Ga0114336_1129899All Organisms → Viruses → Predicted Viral1143Open in IMG/M
3300008964|Ga0102889_1200817Not Available580Open in IMG/M
3300009026|Ga0102829_1329928Not Available511Open in IMG/M
3300009059|Ga0102830_1148533Not Available688Open in IMG/M
3300009068|Ga0114973_10467788Not Available655Open in IMG/M
3300009155|Ga0114968_10653914Not Available553Open in IMG/M
3300009161|Ga0114966_10255714Not Available1079Open in IMG/M
3300009161|Ga0114966_10309458Not Available952Open in IMG/M
3300009163|Ga0114970_10535474Not Available636Open in IMG/M
3300009181|Ga0114969_10041309All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 105023129Open in IMG/M
3300009181|Ga0114969_10583462Not Available615Open in IMG/M
3300009184|Ga0114976_10396018Not Available723Open in IMG/M
3300009185|Ga0114971_10641020Not Available585Open in IMG/M
3300010354|Ga0129333_11139473Not Available650Open in IMG/M
3300012017|Ga0153801_1034106Not Available899Open in IMG/M
3300012663|Ga0157203_1010716All Organisms → cellular organisms → Bacteria1514Open in IMG/M
(restricted) 3300013126|Ga0172367_10335986Not Available877Open in IMG/M
3300017784|Ga0181348_1260805Not Available595Open in IMG/M
3300019093|Ga0187843_10325017Not Available627Open in IMG/M
3300020159|Ga0211734_10615130Not Available703Open in IMG/M
3300020159|Ga0211734_11128020Not Available577Open in IMG/M
3300020160|Ga0211733_10020431Not Available1048Open in IMG/M
3300020161|Ga0211726_10964898Not Available561Open in IMG/M
3300020161|Ga0211726_11039791Not Available749Open in IMG/M
3300020172|Ga0211729_10366796Not Available555Open in IMG/M
3300020172|Ga0211729_10459564All Organisms → Viruses → Predicted Viral1733Open in IMG/M
3300021952|Ga0213921_1004781All Organisms → Viruses → Predicted Viral2811Open in IMG/M
3300021962|Ga0222713_10338882Not Available944Open in IMG/M
3300021962|Ga0222713_10395538Not Available852Open in IMG/M
3300021963|Ga0222712_10702568Not Available569Open in IMG/M
3300023184|Ga0214919_10775417Not Available528Open in IMG/M
3300024346|Ga0244775_11345531Not Available551Open in IMG/M
3300027148|Ga0255115_1083837Not Available552Open in IMG/M
3300027193|Ga0208800_1009795Not Available1218Open in IMG/M
3300027196|Ga0208438_1072035Not Available562Open in IMG/M
3300027212|Ga0208554_1078113Not Available508Open in IMG/M
3300027292|Ga0255134_1046359Not Available703Open in IMG/M
3300027295|Ga0255126_1043823Not Available893Open in IMG/M
3300027499|Ga0208788_1147509Not Available517Open in IMG/M
3300027534|Ga0255125_1004028All Organisms → Viruses → Predicted Viral3819Open in IMG/M
3300027534|Ga0255125_1055876Not Available831Open in IMG/M
3300027659|Ga0208975_1067672Not Available1071Open in IMG/M
3300027710|Ga0209599_10013537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1022421Open in IMG/M
3300027710|Ga0209599_10047254All Organisms → Viruses → Predicted Viral1141Open in IMG/M
3300027736|Ga0209190_1068017Not Available1731Open in IMG/M
3300027736|Ga0209190_1194657Not Available841Open in IMG/M
3300027754|Ga0209596_1035249All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1022769Open in IMG/M
3300027754|Ga0209596_1308184Not Available626Open in IMG/M
3300027756|Ga0209444_10065132Not Available1593Open in IMG/M
3300027756|Ga0209444_10086114Not Available1318Open in IMG/M
3300027770|Ga0209086_10071613All Organisms → Viruses → Predicted Viral1856Open in IMG/M
3300027770|Ga0209086_10242448Not Available802Open in IMG/M
3300027772|Ga0209768_10024124All Organisms → cellular organisms → Bacteria3376Open in IMG/M
3300027808|Ga0209354_10017970All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 105022818Open in IMG/M
3300027963|Ga0209400_1109310Not Available1270Open in IMG/M
3300027971|Ga0209401_1054600All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Selenomonadales → Selenomonadaceae → Schwartzia → Schwartzia succinivorans → Schwartzia succinivorans DSM 105021793Open in IMG/M
3300028025|Ga0247723_1019199Not Available2347Open in IMG/M
3300031787|Ga0315900_10423868Not Available1040Open in IMG/M
3300031963|Ga0315901_10693328Not Available756Open in IMG/M
3300032092|Ga0315905_11496218Not Available530Open in IMG/M
3300032093|Ga0315902_10559139Not Available975Open in IMG/M
3300032116|Ga0315903_11070203Not Available557Open in IMG/M
3300033521|Ga0316616_102847170Not Available652Open in IMG/M
3300034018|Ga0334985_0583736Not Available626Open in IMG/M
3300034066|Ga0335019_0622919Not Available629Open in IMG/M
3300034093|Ga0335012_0339919Not Available750Open in IMG/M
3300034107|Ga0335037_0403151Not Available738Open in IMG/M
3300034116|Ga0335068_0206021Not Available1028Open in IMG/M
3300034116|Ga0335068_0400833Not Available656Open in IMG/M
3300034119|Ga0335054_0592589Not Available608Open in IMG/M
3300034283|Ga0335007_0734719Not Available546Open in IMG/M
3300034284|Ga0335013_0104176Not Available1983Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake16.83%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine15.84%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater10.89%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake8.91%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater8.91%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton4.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater4.95%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater4.95%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water4.95%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.97%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.97%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface2.97%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.99%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.99%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater0.99%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.99%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.99%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.99%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003616Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DNEnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300007548Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3EnvironmentalOpen in IMG/M
3300007560Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02EnvironmentalOpen in IMG/M
3300007618Estuarine microbial communities from the Columbia River estuary - metaG 1554A-02EnvironmentalOpen in IMG/M
3300007622Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02EnvironmentalOpen in IMG/M
3300007627Estuarine microbial communities from the Columbia River estuary - metaG 1546A-02EnvironmentalOpen in IMG/M
3300007636Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3EnvironmentalOpen in IMG/M
3300007639Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02EnvironmentalOpen in IMG/M
3300007649Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3EnvironmentalOpen in IMG/M
3300007861Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3umEnvironmentalOpen in IMG/M
3300007954Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2umEnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008119Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NAEnvironmentalOpen in IMG/M
3300008259Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NAEnvironmentalOpen in IMG/M
3300008261Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NAEnvironmentalOpen in IMG/M
3300008964Estuarine microbial communities from the Columbia River estuary - metaG 1551A-02EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009059Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009181Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009185Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012663Freshwater microbial communities from Indian River, Ontario, Canada - S50EnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019093Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300021952Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MGEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300027148Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepB_8hEnvironmentalOpen in IMG/M
3300027193Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)EnvironmentalOpen in IMG/M
3300027196Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes)EnvironmentalOpen in IMG/M
3300027212Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027292Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8dEnvironmentalOpen in IMG/M
3300027295Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8dEnvironmentalOpen in IMG/M
3300027499Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)EnvironmentalOpen in IMG/M
3300027534Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8dEnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027808Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033521Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_BEnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034107Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034119Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25928J51866_101754913300003616Freshwater LakeMIALISIFLLTALDPIKNFVSLKTYISENAKIHCKVYFINEEIPDFPRVNI
Ga0068872_1029482543300005528Freshwater LakeMIPIISSLFFLLSGLDPIKNFVSLKTYISENAKAHC
Ga0049083_1029810333300005580Freshwater LenticMIAILHIFLLTSLDPVKNFVSLKTYISENAKIHCKVYWINEEIPNFPRVNTIEKS
Ga0049084_1019200143300005585Freshwater LenticMIALISIFLLISLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEK
Ga0078894_1165874413300005662Freshwater LakeMTTLISSLIILSLSLEPIKNFVSLKTYISENAKIHCHVYFINEEIPDFPRVNII
Ga0078894_1175185923300005662Freshwater LakeMTSAILFLLINLNPINNFVSLKTYISENAKTHCHVYFIN
Ga0079957_136067423300005805LakeMIPLLNILALSLEPIKNFVSLKTYISQNAQEHCKVYFIYDIPDFPRVNIIEKNRDAFFDYLDTIGIE
Ga0070744_1017845413300006484EstuarineMIPALSIFLLTSVDPIKNFVSLKTYISENAKIHCYVYFINEEIPDFP
Ga0070744_1024228513300006484EstuarineMMLPLLHIFLLTSLDPVNNFVSLKTYISENAKVHCKVYFINEEIPNFPRVNLIEKSKFDFFAYLD
Ga0075471_1062560323300006641AqueousMIPLMLFTLINLNPIKNFVSLKTYISENAKIHCYVYFINEDIPDFPRVNIIEKSRG
Ga0102877_120035133300007548EstuarineMIPFFLILSSLNPINNFVSLKTYISENAQVHCYVYFINEDIPDYPRVKLIEKSK
Ga0102913_101177983300007560EstuarineMIPFFLILSSLNPINNFVSLKTYISENAQAHCYVYFINEDIPDYPRVKLIEKSKLDFFAY
Ga0102896_115958213300007618EstuarineMIPFFLILSSLNPINNFVSLKTYISENAQVHCYVYFINEDIPDYPRVKLIEKSKLDFFAY
Ga0102863_117551613300007622EstuarineMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINE
Ga0102863_118956213300007622EstuarineMIALLNIFLLSTIDPVNNFVSLKTYISENAKVHCKVYFINEEIPDFPRVNIIEKSK
Ga0102869_112077113300007627EstuarineMIPLFIFSLISLEPVKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNVIVKSKFDFFAYLD
Ga0102856_100878913300007636EstuarineMIPAILFTLINLNPINNFVSLKTYISENAKIHCKVYFINEDLPD
Ga0102856_105008813300007636EstuarineMFPLISIFLLTSVDPIKNFVSLKTYISLNAQKHCQVYFIDENIPDFPRVNLIEKNRDAF
Ga0102865_124743733300007639EstuarineMIPLFIFSLISLEPVKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEKSKFDFFAYLDTIG
Ga0102912_122883633300007649EstuarineMIALISIFLLTSLDPIKNFVSLKTYISENAKVHCKVYWINEEIP
Ga0105736_103550313300007861Estuary WaterMFPLISIFLLTSVDPINNFVSLKTYISENAKAHCYVYFIN
Ga0105736_110038313300007861Estuary WaterMLPIISVLILSSLNPIKNFVSLKTYISENAKIHCQVYFIDENIADYPRVNIIEKSKDDF
Ga0105739_103804833300007954Estuary WaterMLPLLSVFLLTSVDPINNFVSLKTYISENAKAHCYVYFINED
Ga0105745_114258113300007972Estuary WaterMILPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDI
Ga0105746_112211833300007973Estuary WaterMIHLLSLFLILSADPIKNFVSLKTYISENAKVHCHVYFINEEIPDYPRVNLI
Ga0114340_116133243300008107Freshwater, PlanktonMMLPLISILILSSLDPIKNFVSLKTYISENAKKHCQVYFIDENIPDFPRVNI
Ga0114346_126027613300008113Freshwater, PlanktonMIPLFIFSLISLEPVKNFVSLKTYISENAKAHCYVYFIN
Ga0114354_115467113300008119Freshwater, PlanktonMIPLLSILALTFETSKNFVPLKEYISENAKVHCNVYFIHEDIPNFPRVNLIEK
Ga0114841_103984773300008259Freshwater, PlanktonMIPLLSILALSLEPIKNFVSLKTYISQNAQEHCKVYFIYDDIPSFPRVNLIEENREKFFE
Ga0114336_112989933300008261Freshwater, PlanktonMLPLLSVFILTSIDPINNFVSLKTYVSNNAQKHCQV
Ga0102889_120081733300008964EstuarineMIPFFLILSSLNPINNFVSLKTYISENAQVHCYVYFINEDI
Ga0102829_132992833300009026EstuarineMIALISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDIPDFPRVNIIEKNKFDFFAYLDTI
Ga0102830_114853313300009059EstuarineMILPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKSKFDF
Ga0114973_1046778813300009068Freshwater LakeMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVN
Ga0114968_1065391433300009155Freshwater LakeMLSLISIFVLASLDPIKNFVPLKTYISENAKIHCYVYFINEDIPDFPRVNLIE
Ga0114966_1025571413300009161Freshwater LakeMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKNKF
Ga0114966_1030945813300009161Freshwater LakeMIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKNKF
Ga0114970_1053547413300009163Freshwater LakeMIAILHIFLLTSLDPIKNFVSLKTYISENAKIHCKVYWINEEIPNFPRVNTIEKSRFDFFGYLD
Ga0114969_10041309113300009181Freshwater LakeMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVN
Ga0114969_1058346213300009181Freshwater LakeMIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDI
Ga0114976_1039601843300009184Freshwater LakeMIPLFIFSLISLEPVKNFVSLKTYISENAKAHCKVYFINEDLPDFPRVNIIEKSKFDFF
Ga0114971_1064102023300009185Freshwater LakeMIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIE
Ga0129333_1113947313300010354Freshwater To Marine Saline GradientMIAAILFTFINLNPINNFVSLKTYISENAKKHCYVYFINEDIPDFPRVNIIEKTRGE
Ga0153801_103410613300012017FreshwaterMTALIGIFLLTSLDPINNFVSLKTYISQNAQAHCQIYFINEDI
Ga0157203_101071643300012663FreshwaterMFPLVSIFLLTSVDPINNFVSLKTYISENAKAHCYVY
(restricted) Ga0172367_1033598643300013126FreshwaterMLPALLFLSLSLDPVKNFVSLKTYISENAKIHCQVYFINEDIPDFPRVNVI
Ga0181348_126080533300017784Freshwater LakeMIALLHIFLLTSLDPIKNFVSLKTYISQNAQAHCQVYFINE
Ga0187843_1032501713300019093FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFSR
Ga0211734_1061513013300020159FreshwaterMLPLLSLFLLISTDPIKNFVPLKTYISENAKIHCHVYFINEEIPDFPRVNIIEKNQKDFFAYLDTI
Ga0211734_1112802033300020159FreshwaterMLPLISVFLLTSVDPIKNFVSLKTYISENAKVHCGVYFIDETIADYPRVNIKE
Ga0211733_1002043113300020160FreshwaterMLPLLSLFLLISTDPIKNFVPLKTYISENAKIHCHVYFINEEIPDFPRVNIIEKNQKD
Ga0211726_1096489823300020161FreshwaterMLPLISVFLLTSVDPIKNFVSLKTYISENAKVHCGVYFIDETIADYPRVNIKEKTRDDFFAYLDTI
Ga0211726_1103979143300020161FreshwaterMIPALSIFLLTSVDPVKNFVSLKTYISENAKIHCYVYFINEEI
Ga0211729_1036679633300020172FreshwaterMLPFISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDI
Ga0211729_1045956463300020172FreshwaterMFPFISIFLLLSLDPIKNFVSLKTYISENAKVHCYVYFINEDI
Ga0213921_100478183300021952FreshwaterMIPLILFTLINLDPIKNFVSLKTYISENAKVHCYVYFINEDIPDFPRVNLIE
Ga0222713_1033888213300021962Estuarine WaterMTSAILFLLINLNPINNFVSLKTYISENAKTHCHVYFINEDIPDFPRVNIIEKSKFDFFQ
Ga0222713_1039553853300021962Estuarine WaterMTALIGIFLLTSLDPINNFVSLKTYISQNAQAHCQVYFI
Ga0222712_1070256813300021963Estuarine WaterMIPMISSLFFLLSGLDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNVIEKSRVD
Ga0214919_1077541733300023184FreshwaterMIPLISIFLLTSLDPVKNFVSLKTYISENAKIHCGVYFINEEIPD
Ga0244775_1134553133300024346EstuarineMIALLHIFLLTSLDPIKNFVSLKTYISQNAQEHCKVYFIDENIADYPRVNIIEKTKDDFFVYLD
Ga0255115_108383733300027148FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEK
Ga0208800_100979513300027193EstuarineMIPAILFTLINLNPINNFVSLKTYISENAKIHCKVYFINED
Ga0208438_107203533300027196EstuarineMTALISIFLLSSLNPIKNFVPLKTYISENAKVHCYVYFINEEIPDFPRVNT
Ga0208554_107811313300027212EstuarineMIPAILFTLINLNPINNFVSLKTYISENAKIHCKVYFINEDLPDFPRVKLIE
Ga0255134_104635943300027292FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFSRVNL
Ga0255126_104382353300027295FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNI
Ga0208788_114750923300027499Deep SubsurfaceMLPLLHIFLLTSVDPIKNFVSLKTYISENAKVHCKVYFINEEIPNFPRVNLIEKSKFDF
Ga0255125_100402813300027534FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDL
Ga0255125_105587613300027534FreshwaterMIPLFIFSLISLEPVKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNII
Ga0208975_106767213300027659Freshwater LenticMIPLFIFSLISLEPVKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVN
Ga0209599_1001353713300027710Deep SubsurfaceMIPFFLILSSLNPINNFVSLKTYISENAQVHCYVYFINEDIPDYPRVNVIEKSK
Ga0209599_1004725413300027710Deep SubsurfaceMIHLLSLFLILSADPIKNFVSLKTYISENAKAHCYVYFINEDI
Ga0209190_106801773300027736Freshwater LakeMIPLISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEEIPDFPRVNIIEKS
Ga0209190_119465743300027736Freshwater LakeMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKNKFDFFAY
Ga0209596_103524983300027754Freshwater LakeMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDI
Ga0209596_130818433300027754Freshwater LakeMIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDITDF
Ga0209444_1006513263300027756Freshwater LakeMMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEE
Ga0209444_1008611413300027756Freshwater LakeMIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNII
Ga0209086_1007161313300027770Freshwater LakeMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKNK
Ga0209086_1024244843300027770Freshwater LakeMIAILHIFLLTSLDPVKNFVSLKTYISENAKIHCKVYWINEEIPNFPRVNTI
Ga0209768_1002412413300027772Freshwater LakeMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDF
Ga0209354_10017970103300027808Freshwater LakeMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEKNKFDF
Ga0209400_110931013300027963Freshwater LakeMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPR
Ga0209401_105460013300027971Freshwater LakeMIALISIFLLTSLDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFP
Ga0247723_101919973300028025Deep Subsurface SedimentMLPIISVLILSSLNPIKNFVSLKTYISENAKIHCNCSWTY
Ga0315900_1042386813300031787FreshwaterMIPLLSILALSLEPIKNFVSLKTYISQNAQEHCKVYFIYDIPDFPRVNIIEKN
Ga0315901_1069332813300031963FreshwaterMIPIISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIE
Ga0315905_1149621813300032092FreshwaterMIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKS
Ga0315902_1055913943300032093FreshwaterMIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIP
Ga0315903_1107020313300032116FreshwaterMIPLLSILALSLEPIKNFVSLKTYISQNAQEHCKVYFIYDI
Ga0316616_10284717013300033521SoilMLPLISIFILSSLDPIKNFVSLKTYISQNAQKHCQVYFIDENIPDFPRVNIIEKNREAFFEYLDTI
Ga0334985_0583736_2_1933300034018FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDLPDFPRVNIIEKNKFDFFAYLD
Ga0335019_0622919_2_2023300034066FreshwaterMILPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKSKFDFFAYLDTI
Ga0335012_0339919_2_1873300034093FreshwaterMIHLLSLFLILSADPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKDKKSFFEY
Ga0335037_0403151_549_7373300034107FreshwaterMIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKSKFDFFAYL
Ga0335068_0206021_854_10273300034116FreshwaterMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKSKFD
Ga0335068_0400833_495_6563300034116FreshwaterMIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEK
Ga0335054_0592589_1_1983300034119FreshwaterMIPLISIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDLPDFPRVNIIEKNKFDFFAYLDTI
Ga0335007_0734719_1_1593300034283FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDLPDFPRVNIIE
Ga0335013_0104176_3_1433300034284FreshwaterMIALISIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDLPDFP


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