Metagenome Family F103342

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103342
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	53 residues
Representative Sequence	VPDKITYYAVVGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPVIVEW
Number of Associated Samples	86
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.01 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.752 % of family members)
Environment Ontology (ENVO)	Unclassified (29.703 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.594 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.71% Coil/Unstructured: 68.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF08241	Methyltransf_11	0.99
PF11946	DUF3463	0.99
PF01548	DEDD_Tnp_IS110	0.99
PF04434	SWIM	0.99
PF00498	FHA	0.99
PF03819	MazG	0.99
PF00723	Glyco_hydro_15	0.99
PF12323	HTH_OrfB_IS605	0.99
PF03466	LysR_substrate	0.99
PF13419	HAD_2	0.99
PF00440	TetR_N	0.99
PF00067	p450	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2124	Cytochrome P450	Defense mechanisms [V]	0.99
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.99
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.99
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.99
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.99
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.05 %
Unclassified	root	N/A	4.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.06 %
Unclassified	root	N/A	4.95 %
Viruses	superkingdom	All Organisms → Viruses	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.06 %
Unclassified	root	N/A	4.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	91.09 %
Unclassified	root	N/A	4.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	91.09 %
Unclassified	root	N/A	4.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	86.14 %
Unclassified	root	N/A	4.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	77.23 %
Unclassified	root	N/A	4.95 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	77.23 %
Unclassified	root	N/A	4.95 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	77.23 %
Unclassified	root	N/A	4.95 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	77.23 %
Unclassified	root	N/A	4.95 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101219314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642	Open in IMG/M
3300004092\|Ga0062389_100831574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1104	Open in IMG/M
3300005332\|Ga0066388_101158901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1316	Open in IMG/M
3300005335\|Ga0070666_11246603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300005436\|Ga0070713_100924965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	839	Open in IMG/M
3300005518\|Ga0070699_100974279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	777	Open in IMG/M
3300005524\|Ga0070737_10012862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6490	Open in IMG/M
3300005542\|Ga0070732_10804603	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300005602\|Ga0070762_10530510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	775	Open in IMG/M
3300005712\|Ga0070764_10559588	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005764\|Ga0066903_103182482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	888	Open in IMG/M
3300006358\|Ga0068871_100473412	All Organisms → Viruses → Predicted Viral	1126	Open in IMG/M
3300006893\|Ga0073928_11216616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300009088\|Ga0099830_11547748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300009523\|Ga0116221_1559523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300009632\|Ga0116102_1182798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300009643\|Ga0116110_1005622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5650	Open in IMG/M
3300009792\|Ga0126374_10196406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1272	Open in IMG/M
3300010048\|Ga0126373_12491252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300010048\|Ga0126373_12807835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300010379\|Ga0136449_100039169	All Organisms → cellular organisms → Bacteria	11099	Open in IMG/M
3300010379\|Ga0136449_104139554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300012201\|Ga0137365_10228789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1386	Open in IMG/M
3300012201\|Ga0137365_10773389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300012209\|Ga0137379_11816149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300012362\|Ga0137361_11775623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300014156\|Ga0181518_10607869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300016270\|Ga0182036_10593958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	887	Open in IMG/M
3300016319\|Ga0182033_11569070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300016387\|Ga0182040_11448224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	582	Open in IMG/M
3300016387\|Ga0182040_11899713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300016404\|Ga0182037_11967143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300016445\|Ga0182038_10688466	Not Available	889	Open in IMG/M
3300017926\|Ga0187807_1131438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	795	Open in IMG/M
3300017928\|Ga0187806_1316321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300017943\|Ga0187819_10423686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	763	Open in IMG/M
3300017946\|Ga0187879_10535693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300017961\|Ga0187778_10625231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	723	Open in IMG/M
3300017961\|Ga0187778_11076515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300017970\|Ga0187783_10101098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2125	Open in IMG/M
3300017970\|Ga0187783_10972167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	612	Open in IMG/M
3300017972\|Ga0187781_10170907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1530	Open in IMG/M
3300017972\|Ga0187781_11290201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300018016\|Ga0187880_1482738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300018019\|Ga0187874_10154904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	967	Open in IMG/M
3300018019\|Ga0187874_10449841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300018037\|Ga0187883_10630679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300018085\|Ga0187772_10650632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300018085\|Ga0187772_10891076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300018086\|Ga0187769_11034174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300018090\|Ga0187770_10653137	Not Available	838	Open in IMG/M
3300021406\|Ga0210386_11555314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300021479\|Ga0210410_11473104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300021560\|Ga0126371_10544850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1309	Open in IMG/M
3300025898\|Ga0207692_10010635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3886	Open in IMG/M
3300025898\|Ga0207692_10107696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1541	Open in IMG/M
3300025914\|Ga0207671_10647040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	842	Open in IMG/M
3300026078\|Ga0207702_11649174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300027855\|Ga0209693_10070485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1724	Open in IMG/M
3300027879\|Ga0209169_10488379	Not Available	647	Open in IMG/M
3300027895\|Ga0209624_10326968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1022	Open in IMG/M
3300027968\|Ga0209061_1104013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	991	Open in IMG/M
3300029943\|Ga0311340_10451867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1163	Open in IMG/M
3300030020\|Ga0311344_11133830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300031546\|Ga0318538_10099315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1501	Open in IMG/M
3300031572\|Ga0318515_10584247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	594	Open in IMG/M
3300031572\|Ga0318515_10761411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300031708\|Ga0310686_103735772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300031708\|Ga0310686_109471747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2128	Open in IMG/M
3300031719\|Ga0306917_11166262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300031724\|Ga0318500_10673821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300031751\|Ga0318494_10661715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300031768\|Ga0318509_10154206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1267	Open in IMG/M
3300031792\|Ga0318529_10566637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300031795\|Ga0318557_10492869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300031796\|Ga0318576_10507928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300031819\|Ga0318568_10000559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14809	Open in IMG/M
3300031832\|Ga0318499_10131643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	974	Open in IMG/M
3300031845\|Ga0318511_10437147	Not Available	602	Open in IMG/M
3300031893\|Ga0318536_10597237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300031942\|Ga0310916_10780152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	806	Open in IMG/M
3300031946\|Ga0310910_11286633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300032010\|Ga0318569_10432177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300032041\|Ga0318549_10365880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300032043\|Ga0318556_10619278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300032064\|Ga0318510_10148610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300032065\|Ga0318513_10079144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1515	Open in IMG/M
3300032067\|Ga0318524_10177207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1085	Open in IMG/M
3300032067\|Ga0318524_10780861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300032089\|Ga0318525_10232027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	949	Open in IMG/M
3300032160\|Ga0311301_11553575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
3300032829\|Ga0335070_11149778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	713	Open in IMG/M
3300032892\|Ga0335081_10232586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2509	Open in IMG/M
3300032892\|Ga0335081_10841202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1090	Open in IMG/M
3300032897\|Ga0335071_10013680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8282	Open in IMG/M
3300032898\|Ga0335072_11703913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300033134\|Ga0335073_10418510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1560	Open in IMG/M
3300033134\|Ga0335073_11063329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	829	Open in IMG/M
3300033158\|Ga0335077_11941381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300034163\|Ga0370515_0507431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.04%
Host-Associated	Host-Associated	3.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.17%
Aquatic	Environmental → Aquatic	12.87%
Plants	Host-Associated → Plants	3.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.19%
Freshwater	Environmental → Aquatic → Freshwater	11.88%
Peat	Environmental → Terrestrial → Peat	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.88%
Loam	Environmental → Terrestrial → Soil → Loam	11.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.99%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	18.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.98%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	9.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.99%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.99%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.99%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.99%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.99%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1012193142	3300002245	Forest Soil	MPDKITYYAIIDGSATVDRPGGLLRRLEFDGDGFTDEGLRQDFSWDFTPLIVEWERSNFSYELVEVSHEQA
Ga0062389_1008315741	3300004092	Bog Forest Soil	MPDRITFYAILGGGRSIDNPYGLVRRLEFDGDGFTDEGLRSDFSWEFTPAIVDWEHGSYDEELVEV
Ga0066388_1011589012	3300005332	Tropical Forest Soil	MPDKISFYAVIGGNRTIDNPYGLVRRLEFHGDGFTDEGLRKDFSWAFSPA
Ga0070666_112466031	3300005335	Switchgrass Rhizosphere	VPDKITYYAVVGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPVIVEWKR
Ga0070713_1009249652	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPDEITFYAIVGGGNTMDNPRGLARRLETDWGFTDEALRDDFSWSFTP
Ga0070699_1009742791	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MADKITFYAIVDDETTVDKPYGLLRRLEFDGDGFTDEGLRQDFSWSFTPIIVEWERSNFDDELVR
Ga0070737_100128628	3300005524	Surface Soil	MPDKITFYAIIGGDRTVDNPYGLVRRLEFDGNGFTDEGLRK
Ga0070732_108046032	3300005542	Surface Soil	VPDKITFYAIVGGDRTVDNPYGLVRRLEFDGDGFTDEALRKDF
Ga0070762_105305101	3300005602	Soil	MPDKITFYAIVDGKTSVDRPYGLLRRLEFDGNGFTDEGLR
Ga0070764_105595881	3300005712	Soil	VPDKITFYAVIGGDRTVDNPYGLVRRLEFDGDGFTDEGLRKDFSWTFTPAIVEWK
Ga0066903_1031824821	3300005764	Tropical Forest Soil	MPDKITYYAVVDDDTTAEQPYGLVRRLEFDGDGFTDETLRRDFSWLFTPAIVEW
Ga0068871_1004734122	3300006358	Miscanthus Rhizosphere	VPDKITYYAVIGGDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWA
Ga0073928_112166162	3300006893	Iron-Sulfur Acid Spring	VPDKITYYAVTGGERTIDNPYGLVRRLEFDGNGFTDEGLRKDFSWAFS
Ga0099830_115477482	3300009088	Vadose Zone Soil	MPDKITYYAVVGGSRTVEDPYGLVRRLDFDGDGFTDEGLRKDFSWKFTP
Ga0116221_15595231	3300009523	Peatlands Soil	MPDKITFYAIVGGDRTIDNPYGLVRRLEFHGDGFTDEALRKDFSWKFTPL
Ga0116102_11827982	3300009632	Peatland	MPDKITFYAIVGDDTTIERPYGLLRRLEFDDDGFTDEGLRRDLSWSFTPIIVEWKRGDFD
Ga0116110_10056229	3300009643	Peatland	MPDNITYYAVVDDETTVESPYGLVRRLEFGDDGFTDETLRRDFSWIF
Ga0126374_101964061	3300009792	Tropical Forest Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPTIVEWKHGDFADELV
Ga0126373_124912522	3300010048	Tropical Forest Soil	MPDKITFYAVIGGDRTIDNPYGLVRRLEFHGDGFTDEGLRKDFSW
Ga0126373_128078352	3300010048	Tropical Forest Soil	MPDKITYYAVVDNEATVGQPYGLVRRLEFDGDGFTDETLRRDFSWIF
Ga0136449_10003916913	3300010379	Peatlands Soil	MPDNITYYAVVDDETTVESPYGLVRRLEFGDDGFTDETLRRDFSWIFTPA
Ga0136449_1041395542	3300010379	Peatlands Soil	MADKITYYAVIDEDASADRPYGLVRRLEFDGNGFSDETLRRDFSWQFTPAIVEWKRGDLSYELVEVS
Ga0137365_102287892	3300012201	Vadose Zone Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTP
Ga0137365_107733892	3300012201	Vadose Zone Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPVIV
Ga0137379_118161492	3300012209	Vadose Zone Soil	MPDKITFYAIVGGRNTADNPHGLARRLETDWGFTDEALRTDFSW
Ga0137386_100168071	3300012351	Vadose Zone Soil	VPDKITFYAIVGGSNTIDNPRGLARRLETDWGFTDEALRDDFSWKFTPVIV
Ga0137361_117756232	3300012362	Vadose Zone Soil	VPDKITFYAITGGSNTLDNPRGLVRRLEFDGDGFTDEGLRVDF
Ga0181518_106078692	3300014156	Bog	MPDKITFYAVVGGDRTVDNPYGLVRRLQTEWGFTDEGLRRDFSWKFTPSIVEW
Ga0182036_105939581	3300016270	Soil	MPDKITFYAIIDSETTAERPYGLLRRLEFDGNGFTDEGLRRDFSWSFTPIIVEWQRSNF
Ga0182033_115690701	3300016319	Soil	VPDKITFYAVIGEDRTIDNPYGLVRRLEFDGDGFTDECLRRDFSWAFTPVIVEWKHGDFADELVEV
Ga0182040_114482242	3300016387	Soil	VPDKITFYAIIGEDRTVDNPYGLVRRLEFDGNGFTDEGLRKDFSWAFTPAIVEWKHGDFA
Ga0182040_118997131	3300016387	Soil	VPDKITYYAVIGQDRTIDNPYGLVRRLEFDSDGFTDEGLRKDFSWAFTPAIVEWKHGDFADELV
Ga0182037_119671431	3300016404	Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPAIVEWKHGDFADELVG
Ga0182038_106884662	3300016445	Soil	MPDKITFYAVIGGDRTVNNPYGLVRRLGFDGDGFTDEALRKDFSWNFTPLITEWEHGDLEDEL
Ga0187807_11314381	3300017926	Freshwater Sediment	MPDKITYYAVVGDDRTIDNPYGLVRRLEHDDGPSDEGLRKDFSWAHTPAI
Ga0187806_13163211	3300017928	Freshwater Sediment	MADRITFYAIVGGDRTVDNPYGLARRLEFDGDGFTDEALRRDFSWEFTPAIIDW
Ga0187819_104236862	3300017943	Freshwater Sediment	VPDKITFYAIIGGGRTVDNPYGLVRRLEFDGNGFSDEALRKDFSWKF
Ga0187879_105356931	3300017946	Peatland	MPDKITFYAVIGGDRTVDNPYGLVRRLETDWGFTDEGLRRDFSWKFTPSIVEWQRGDLGQELVEVTH
Ga0187778_106252312	3300017961	Tropical Peatland	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEALRKDFSWAFTPVIVEW
Ga0187778_110765152	3300017961	Tropical Peatland	VPDKIIYYAIVGGDRTVDNPYGLVRRLEHDDGSSDEALRKDFSWRFTPVIV
Ga0187783_101010981	3300017970	Tropical Peatland	MPDKITFYAIVDGETTIEKPHGLLRRLEFDGNGFTDEGLRRDFSWSFTPIIVEWQRS
Ga0187783_109721671	3300017970	Tropical Peatland	VHGTITYYALVADNRTIDNPYGLVRRLEHDDGPSDEGMRRDFSWALSPVIA
Ga0187781_101709073	3300017972	Tropical Peatland	VSDKITFYAIVGGDRTVDNPYGLVRRLEFDGDGFTDEALRKDFSWKFTP
Ga0187781_112902011	3300017972	Tropical Peatland	MPDKITFYAIIGEDRTVDNPYGLVRRLEFDGDGFTDE
Ga0187880_14827382	3300018016	Peatland	MPDKITYYAVTGGERTASHPHGLVRRLSFDGGGINDEGLRKDFSWKFTPAIAEW
Ga0187874_101549042	3300018019	Peatland	MPDKITFYAVIGGDRTVDNPYGLVRRLQTDWGLADEGLRKDFSWKFT
Ga0187874_104498411	3300018019	Peatland	MPDNITYYAVVDDETTVESPYGLVRRLEFGDDGFTDETLRRDFSWIFTPAIAE
Ga0187883_106306791	3300018037	Peatland	MPDKITFYAVVGGDRTVDNPYGLVRRLQTEWGFTDEGLRRDFSWKFTP
Ga0187772_106506321	3300018085	Tropical Peatland	MPDKITYYAVIADDRTIDNPYGLVRRLEHDDGPSDEGLRKDFSWAGTPAIV
Ga0187772_108910762	3300018085	Tropical Peatland	VPDKITFYAITGGSNTVDNPRGLVRRLEFDGDGFTDE
Ga0187769_110341742	3300018086	Tropical Peatland	VSDKITFYAVIGGDRTVDNPYGLVRRLEFNGDGFTDEGL
Ga0187770_106531371	3300018090	Tropical Peatland	MADKITFYAIVGGKNSLDNPRGLARRLETDWGFTDEALRDDFSWSL
Ga0210386_115553141	3300021406	Soil	MADKITFYAIVDDDTTVVRPSGLLRRLEFDGYGFTDEGLRRDFSWSFTPIIV
Ga0210410_114731041	3300021479	Soil	VPDKITYYAVIGEDRTIGNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPAIVEWKHGD
Ga0126371_105448502	3300021560	Tropical Forest Soil	MPDKITYYAVVDDEATVEQPYGLVRRLEFDRDGFTDETLRRDFSWIFTPAIVEWK
Ga0207692_100106356	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MPDKITFYAVIGGDRTIDNPYGLVRRLQFNGDGFTDEG
Ga0207692_101076963	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VPDKITYYAVVGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPVIVEW
Ga0207671_106470401	3300025914	Corn Rhizosphere	VPDKITYYAVIGGDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPVIVEWKRGDFADELVEV
Ga0207702_116491742	3300026078	Corn Rhizosphere	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPVIVEW
Ga0209693_100704854	3300027855	Soil	MPDKITFFAIVGGRNTLENPRGLARRLEFDGDGFTDEALR
Ga0209169_104883791	3300027879	Soil	MPDKITFYAIVDNETTVERPYGLLRRLEFDGNGFTD
Ga0209624_103269682	3300027895	Forest Soil	MSDKITFYAIVDDETTAERPYGLLRRLEFEGNGFADEGLRRDFSWSFSPIIVEWERSD
Ga0209061_11040132	3300027968	Surface Soil	MPDKITFYAIIGGDRTVDNPYGLVRRLEFDGNGFTDEGLRKDFS
Ga0311340_104518671	3300029943	Palsa	VPDKITFYAVIGGDRTVDNPYGLVRRLEFGGDGFTDEGLRKDFSWFFTPAIVEWKRGDLG
Ga0311344_111338302	3300030020	Bog	MPDKITFYAVIGGDRTVDNPYGLVRRLQTDWGLADEG
Ga0318538_100993151	3300031546	Soil	MPDKITFYAIVDSETTAERPYGLLRRLEFDGNGFTDEGLRRD
Ga0318515_105842471	3300031572	Soil	MPDKITFYAIVDSETTAERPYGLLRRLEFDGNGFTDEGLR
Ga0318515_107614111	3300031572	Soil	VPDKITFYAVIGEDRTIDNPYGLVRRLEFDGDGFTDECLRRDFSWAFTPV
Ga0310686_1037357721	3300031708	Soil	MPDKITFYAIVDGESTAGRPLGLLRRLEFGGNGFTDEGLR
Ga0310686_1094717471	3300031708	Soil	VPDKITFYAVIGGDRTVDNPYGLVRRLEFDGDGFTDEG
Ga0306917_111662622	3300031719	Soil	VPDKITYYAVIGQDRTIDNPYGLVRRLEFDSDGFTDEGLRKDFSWAFTPAIV
Ga0318500_106738212	3300031724	Soil	MPDKITFYAIIDDETTVDRPSGLLRRLEFDGDGFTDEGLRRDFSWDFTPLITEWERSDFA
Ga0318494_106617152	3300031751	Soil	MPDKITYYAVVSNGRTVEEPYGLVRRLNFDGDGFTDEGLRKDFSWKFTPAIAEWEHGDFT
Ga0318509_101542062	3300031768	Soil	VPDKITFYAIIGEDRTVDNPYGLVRRLEFDGNGFTDEGLRKDFSWAFTPAIVEWKHGDFADELVEV
Ga0318529_105666372	3300031792	Soil	MPDKITYYAVVSTGRTVEEPYGLVRRLNFDGDGFTDEGLRKDFSWKFTPAIAEWEHGDFTYDLVE
Ga0318557_104928691	3300031795	Soil	MPDKITYYAVVSTGRTVEEPYGLVRRLNFDGDGFTDEGLRKDFSWKFT
Ga0318576_105079281	3300031796	Soil	MPDKITFYAIVDSETTAERPYGLLRRLEFDGNGFTDEGLRRDFSWSFTPIIVEWQRSNF
Ga0318568_1000055921	3300031819	Soil	MPDKITFYAIVDSETTAERPYGLLRRLEFDGNGFTDEGLRRDFSWSFTPIIVEWQRSNFDDELVEVSHEQAS
Ga0318499_101316432	3300031832	Soil	VPDKITFYAIIGEDRTVDNPYGLVRRLEFDGNGFTDEGLRKDFSWAFTPAIVEWKH
Ga0318511_104371471	3300031845	Soil	VPDKITYYAVTGEDRTIDNPHGLVRRLELDGDGFTDEALRKDFSWAFTPVIAEWE
Ga0318536_105972371	3300031893	Soil	VPDKITFYAIIGGDRTVDNPYGLVRRLAFDGDGFTDEALRKDFSWTFTPLIAEWEH
Ga0310916_107801522	3300031942	Soil	MPDKITFYAIVGGDRTVNNPYGLVRRLGFDGDGFTDEALRKDFSWKFTP
Ga0310910_112866331	3300031946	Soil	MPDKITFYAIVDSETTAERPYGLLRRLEFDGNGFTDEGLRRDFSWSFTPIIVEWQR
Ga0318569_104321771	3300032010	Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPAIVEWK
Ga0318549_103658801	3300032041	Soil	MPDKITYYAVVSNGRTVEEPYGLVRRLNFDGDGFTDEGLRKDFSWKFTPAIAEWEH
Ga0318556_106192781	3300032043	Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFSDEGLRKDFSWAFTPVIVEWK
Ga0318510_101486101	3300032064	Soil	MPDKITFYAIVDSETTAERPYGLLRRLEFDGNGFTDEGLRRDFSWSFTPIIVEWQRSNFDDELVEVSH
Ga0318513_100791441	3300032065	Soil	VPDKITFYAIIGEDRTVDNPYGLVRRLEFDGNGFTDEGLRKDFSWAFTPAIVEWKHGDFADELVEVS
Ga0318524_101772072	3300032067	Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDESLRRDFSWAF
Ga0318524_107808612	3300032067	Soil	MPDKITFYAIIDDETTVDRPSGLLRRLEFDGDGFTDEGLRRDFSWDFTPLITEW
Ga0318525_102320271	3300032089	Soil	VPDKITYYAVIGQDRTIDNPYGLVRRLEFDSDGFTDEGLRKDFSWAFTPAIVEWK
Ga0311301_115535752	3300032160	Peatlands Soil	MPDKITFYAIVGDDTTIERPYGLLRRLEFDDDGFTDEGLRRDLSWSFTPIIVEWKRGDFDDELVEVSHAQ
Ga0335070_111497781	3300032829	Soil	VPDKITFYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAF
Ga0335081_102325863	3300032892	Soil	MPDKITFYAIIGEDRTVDNPYGLVRRLEFDGNGFTDEGLRKDFSWAFTPAIVEWKHG
Ga0335081_108412021	3300032892	Soil	MPDKITFYAIVDDETTVERPSGLVRRLEFDGNGFADEGLRRDF
Ga0335071_100136801	3300032897	Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGNGFTDEGLRRDFSWAFTPAIVEWK
Ga0335072_117039132	3300032898	Soil	MPDKITFYAIVDSETTVERPYGLLRRLEFDGNGFTDEGLRRDFSWSF
Ga0335073_104185103	3300033134	Soil	MPDKITYYAVVGDGRTVEAPYGLVRRLAYEDGGSTDEGLRKDLSWKFTPAIT
Ga0335073_110633291	3300033134	Soil	VPDKITYYAVIGEDRTIDNPYGLVRRLEFDGDGFTDEGLRKDFSWAFTPAIVEWKHGDFADE
Ga0335077_119413813	3300033158	Soil	MPDKITFYAIVDNDTTVERPYGLLRRLEFDGDGFTDEGLRRDFSWNFTPIIVEWERSDFDDELVE
Ga0370515_0507431_2_205	3300034163	Untreated Peat Soil	MPDKITFYAILGGGRTIDNPYGLVRRLEFDGDGFTDEGLRRDFSWEFTPAIVDWEHGSYDEELVEVSH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103342

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences