Metagenome / Metatranscriptome Family F103394

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103394
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	61 residues
Representative Sequence	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVVILAAALAKAKCCKK
Number of Associated Samples	43
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	83.00 %
% of genes near scaffold ends (potentially truncated)	19.80 %
% of genes from short scaffolds (< 2000 bps)	91.09 %
Associated GOLD sequencing projects	36
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Predicted Viral (35.644 % of family members)
NCBI Taxonomy ID	10239 (predicted)
Taxonomy	All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (44.555 % of family members)
Environment Ontology (ENVO)	Unclassified (57.426 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (92.079 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.09% β-sheet: 0.00% Coil/Unstructured: 71.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00565	SNase	48.51
PF02427	PSI_PsaE	1.98
PF00551	Formyl_trans_N	0.99
PF13370	Fer4_13	0.99
PF01106	NifU	0.99
PF03237	Terminase_6N	0.99
PF02769	AIRS_C	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0694	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain	Posttranslational modification, protein turnover, chaperones [O]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.34 %
Unclassified	root	N/A	33.66 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	66.34 %
Unclassified	root	N/A	33.66 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	26.73 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	26.73 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	26.73 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	26.73 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	25.74 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	20.79 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Salacisavirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus	1.98 %
Tevenvirinae	subfamily	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae	1.98 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Tequatrovirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	1.98 %
Prochlorococcus virus PSSM2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	1.98 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	35.64 %
Unclassified	root	N/A	33.66 %
Prochlorococcus phage P-SSM2	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2 → Prochlorococcus phage P-SSM2	1.98 %
Tequatrovirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001954\|GOS2235_1022030	All Organisms → Viruses → Predicted Viral	1576	Open in IMG/M
3300002488\|JGI25128J35275_1043379	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	998	Open in IMG/M
3300002488\|JGI25128J35275_1089438	Not Available	627	Open in IMG/M
3300002488\|JGI25128J35275_1113807	Not Available	541	Open in IMG/M
3300005404\|Ga0066856_10282788	Not Available	716	Open in IMG/M
3300005404\|Ga0066856_10296995	Not Available	696	Open in IMG/M
3300005404\|Ga0066856_10474013	Not Available	533	Open in IMG/M
3300005404\|Ga0066856_10506665	Not Available	513	Open in IMG/M
3300006024\|Ga0066371_10088287	All Organisms → Viruses	922	Open in IMG/M
3300006024\|Ga0066371_10098456	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	875	Open in IMG/M
3300006024\|Ga0066371_10170701	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	671	Open in IMG/M
3300006024\|Ga0066371_10181308	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	651	Open in IMG/M
3300006024\|Ga0066371_10206308	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	610	Open in IMG/M
3300006024\|Ga0066371_10213880	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	599	Open in IMG/M
3300006024\|Ga0066371_10229481	Not Available	578	Open in IMG/M
3300006332\|Ga0068500_1174645	All Organisms → Viruses → Predicted Viral	2143	Open in IMG/M
3300006332\|Ga0068500_1194540	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	560	Open in IMG/M
3300006565\|Ga0100228_1056989	All Organisms → Viruses → Predicted Viral	3820	Open in IMG/M
3300006928\|Ga0098041_1019912	All Organisms → Viruses → Predicted Viral	2195	Open in IMG/M
3300006928\|Ga0098041_1039043	All Organisms → Viruses → Predicted Viral	1543	Open in IMG/M
3300006928\|Ga0098041_1093744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	969	Open in IMG/M
3300009481\|Ga0114932_10121966	All Organisms → Viruses → Predicted Viral	1614	Open in IMG/M
3300009593\|Ga0115011_10101450	All Organisms → Viruses → Predicted Viral	2034	Open in IMG/M
3300009593\|Ga0115011_10305697	All Organisms → Viruses → Predicted Viral	1210	Open in IMG/M
3300009593\|Ga0115011_10342294	All Organisms → Viruses → Predicted Viral	1148	Open in IMG/M
3300009593\|Ga0115011_10700952	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	828	Open in IMG/M
3300009593\|Ga0115011_10886844	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	746	Open in IMG/M
3300009593\|Ga0115011_11590967	Not Available	581	Open in IMG/M
3300009593\|Ga0115011_12090563	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	519	Open in IMG/M
3300009679\|Ga0115105_10619964	All Organisms → Viruses → Predicted Viral	1163	Open in IMG/M
3300009790\|Ga0115012_10273955	All Organisms → Viruses → Predicted Viral	1262	Open in IMG/M
3300009790\|Ga0115012_10927552	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	714	Open in IMG/M
3300009790\|Ga0115012_10982073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	696	Open in IMG/M
3300009790\|Ga0115012_11344075	Not Available	607	Open in IMG/M
3300009790\|Ga0115012_11810448	Not Available	535	Open in IMG/M
3300012919\|Ga0160422_10008226	Not Available	6255	Open in IMG/M
3300012920\|Ga0160423_10580081	All Organisms → Viruses	760	Open in IMG/M
3300012920\|Ga0160423_10831013	All Organisms → Viruses	621	Open in IMG/M
3300012952\|Ga0163180_10238648	All Organisms → Viruses → Predicted Viral	1262	Open in IMG/M
3300012952\|Ga0163180_10620336	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	825	Open in IMG/M
3300012953\|Ga0163179_10508079	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	998	Open in IMG/M
3300012953\|Ga0163179_10979342	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	736	Open in IMG/M
3300012953\|Ga0163179_11520840	Not Available	603	Open in IMG/M
3300017720\|Ga0181383_1039720	All Organisms → Viruses → Predicted Viral	1265	Open in IMG/M
3300017720\|Ga0181383_1107772	Not Available	748	Open in IMG/M
3300017732\|Ga0181415_1031895	All Organisms → Viruses → Predicted Viral	1213	Open in IMG/M
3300017750\|Ga0181405_1067812	Not Available	923	Open in IMG/M
3300017750\|Ga0181405_1104055	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	715	Open in IMG/M
3300017753\|Ga0181407_1167632	Not Available	538	Open in IMG/M
3300017759\|Ga0181414_1185376	Not Available	540	Open in IMG/M
3300017767\|Ga0181406_1235547	Not Available	539	Open in IMG/M
3300020292\|Ga0211663_1003649	All Organisms → Viruses → Predicted Viral	2632	Open in IMG/M
3300020345\|Ga0211706_1030704	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2 → Prochlorococcus phage P-SSM2	1169	Open in IMG/M
3300020348\|Ga0211600_1073333	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	793	Open in IMG/M
3300020379\|Ga0211652_10024232	All Organisms → Viruses → Predicted Viral	1819	Open in IMG/M
3300020379\|Ga0211652_10077412	All Organisms → Viruses → Predicted Viral	1000	Open in IMG/M
3300020379\|Ga0211652_10147914	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	714	Open in IMG/M
3300020379\|Ga0211652_10152237	Not Available	703	Open in IMG/M
3300020379\|Ga0211652_10165976	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	673	Open in IMG/M
3300020379\|Ga0211652_10243171	Not Available	552	Open in IMG/M
3300020395\|Ga0211705_10289970	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	606	Open in IMG/M
3300020416\|Ga0211644_10011613	All Organisms → Viruses → Predicted Viral	3663	Open in IMG/M
3300020421\|Ga0211653_10101325	All Organisms → Viruses → Predicted Viral	1280	Open in IMG/M
3300020421\|Ga0211653_10268119	Not Available	742	Open in IMG/M
3300020421\|Ga0211653_10354518	Not Available	634	Open in IMG/M
3300020445\|Ga0211564_10165171	All Organisms → Viruses → Predicted Viral	1100	Open in IMG/M
3300020445\|Ga0211564_10182610	All Organisms → Viruses → Predicted Viral	1041	Open in IMG/M
3300020445\|Ga0211564_10250644	Not Available	875	Open in IMG/M
3300020445\|Ga0211564_10269349	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	841	Open in IMG/M
3300020449\|Ga0211642_10404264	All Organisms → Viruses	588	Open in IMG/M
3300020449\|Ga0211642_10421094	Not Available	575	Open in IMG/M
3300020457\|Ga0211643_10148097	All Organisms → Viruses → Predicted Viral	1157	Open in IMG/M
3300020457\|Ga0211643_10158065	All Organisms → Viruses → Predicted Viral	1116	Open in IMG/M
3300020457\|Ga0211643_10187154	All Organisms → Viruses → Predicted Viral	1019	Open in IMG/M
3300020457\|Ga0211643_10623719	Not Available	528	Open in IMG/M
3300020472\|Ga0211579_10431269	Not Available	745	Open in IMG/M
3300020472\|Ga0211579_10444446	Not Available	733	Open in IMG/M
3300020472\|Ga0211579_10487244	Not Available	695	Open in IMG/M
3300024344\|Ga0209992_10174018	Not Available	926	Open in IMG/M
3300025110\|Ga0208158_1021427	All Organisms → Viruses → Predicted Viral	1693	Open in IMG/M
3300025132\|Ga0209232_1059147	All Organisms → Viruses → Predicted Viral	1378	Open in IMG/M
3300025132\|Ga0209232_1171060	Not Available	681	Open in IMG/M
3300025132\|Ga0209232_1177374	Not Available	664	Open in IMG/M
3300026076\|Ga0208261_1031963	All Organisms → Viruses → Predicted Viral	1513	Open in IMG/M
3300026076\|Ga0208261_1104616	Not Available	736	Open in IMG/M
3300026077\|Ga0208749_1015659	All Organisms → Viruses → Predicted Viral	1591	Open in IMG/M
3300026077\|Ga0208749_1053929	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	846	Open in IMG/M
3300026077\|Ga0208749_1108795	Not Available	576	Open in IMG/M
3300027830\|Ga0209359_10140354	All Organisms → Viruses → Predicted Viral	1052	Open in IMG/M
3300027906\|Ga0209404_10076766	All Organisms → Viruses → Predicted Viral	1937	Open in IMG/M
3300027906\|Ga0209404_10221611	All Organisms → Viruses → Predicted Viral	1182	Open in IMG/M
3300027906\|Ga0209404_10247108	All Organisms → Viruses → Predicted Viral	1123	Open in IMG/M
3300027906\|Ga0209404_10520655	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2 → Prochlorococcus phage P-SSM2	789	Open in IMG/M
3300027906\|Ga0209404_10525454	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Tequatrovirus	785	Open in IMG/M
3300031773\|Ga0315332_10088037	All Organisms → Viruses → Predicted Viral	1998	Open in IMG/M
3300031774\|Ga0315331_10102242	All Organisms → Viruses → Predicted Viral	2133	Open in IMG/M
3300031774\|Ga0315331_10214547	All Organisms → Viruses → Predicted Viral	1428	Open in IMG/M
3300031774\|Ga0315331_10851073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	632	Open in IMG/M
3300032011\|Ga0315316_10236884	All Organisms → Viruses → Predicted Viral	1527	Open in IMG/M
3300032047\|Ga0315330_10421423	Not Available	819	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	55.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified	27.72%
Strait	Environmental → Aquatic → Marine → Strait	7.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.93%
Volcanic	Environmental → Aquatic → Marine → Volcanic	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	49.50%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	27.72%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.93%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	5.94%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	44.55%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	27.72%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	7.92%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	5.94%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	4.95%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	2.97%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.98%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	1.98%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.99%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001954	Marine microbial communities from Colon, Panama - GS019	Environmental	Open in IMG/M
3300002488	Marine viral communities from the Pacific Ocean - ETNP_2_60	Environmental	Open in IMG/M
3300005404	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205	Environmental	Open in IMG/M
3300006024	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B	Environmental	Open in IMG/M
3300006332	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200m	Environmental	Open in IMG/M
3300006565	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_2_0125m	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300009481	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009679	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300012919	Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012952	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017753	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300020292	Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555930-ERR599113)	Environmental	Open in IMG/M
3300020345	Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX556079-ERR599137)	Environmental	Open in IMG/M
3300020348	Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)	Environmental	Open in IMG/M
3300020379	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)	Environmental	Open in IMG/M
3300020395	Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)	Environmental	Open in IMG/M
3300020416	Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)	Environmental	Open in IMG/M
3300020421	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)	Environmental	Open in IMG/M
3300020445	Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)	Environmental	Open in IMG/M
3300020449	Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020472	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)	Environmental	Open in IMG/M
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental	Open in IMG/M
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300026076	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300026077	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)	Environmental	Open in IMG/M
3300027830	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300031773	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032047	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2235_10220302	3300001954	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPETGVSWTTGIGIAAIVAILAAAVYKSKCCKK*
JGI25128J35275_10433791	3300002488	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGLAAIVVILAAAFAKYKCKK
JGI25128J35275_10894382	3300002488	Marine	MDKLLKGAVDTLPAAKELIEVQEALPLPEPVTTESSVSWTTGIGVAAIVAILAAAVYKSKCCKK*
JGI25128J35275_11138072	3300002488	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLILAAALAKSKCCKK*
Ga0066856_102827882	3300005404	Marine	MDKLLKGAVDTLPATKELIEVQEALPLPEPESGGVSVGTGIGIAAIVLILAAAVAKYKCKCKK*
Ga0066856_102969952	3300005404	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVVVLAAALAKSKCCKK*
Ga0066856_104740131	3300005404	Marine	DKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALAKSKCCNKK*
Ga0066856_105066651	3300005404	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVLVLAAALAKAKCCKK*
Ga0066371_100882872	3300006024	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVLVLAAALAKAKCCKK*
Ga0066371_100984562	3300006024	Marine	MDTIIKGASSLVPATKEIIEVEQALPLPEPESGVSWTTGIGIAAIVLILAAAVAKAKCCKK*
Ga0066371_101707012	3300006024	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPESGGFPWCGVGIGVGAVVLAAIFAKLYKCTAKK*
Ga0066371_101813082	3300006024	Marine	METVIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIGAIVLILAAAFAKYKCKK
Ga0066371_102063082	3300006024	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVTAESSVSWTTGIGIAAIVVILAAALAKSKCCKK*
Ga0066371_102138803	3300006024	Marine	MDKLLKGAVDSVPAAKEIIEVQEALPLPEPESGVSWTTGIGIGAIVLILAAAFAKYKCKK
Ga0066371_102294812	3300006024	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALAKSKCCNKK*
Ga0068500_11746453	3300006332	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAALVLILGAAFAKYKCKCKK*
Ga0068500_11945403	3300006332	Marine	KGAVDSVPAAKELIEVQEALPLPESVTTESSVSWTTGIGIAALVAILAAAVYKSKCCKK*
Ga0100228_105698910	3300006565	Marine	SVPAAKELIEVQEALPLPESVTTESSVSWTTGIGIAALVAILAAAVYKSKCCKK*
Ga0098041_10199124	3300006928	Marine	METVIKGASALVPATKELIEVEQALPLPEPESGVSWTTGIGIAALVVIVAAAVYKSKCCKKK*
Ga0098041_10390434	3300006928	Marine	MNKLIKGAVDVVPESVKTVIEVEEVLPLPEPQGGFPWCGVGIGVGVVVLAAVCAKFYKCTAKK*
Ga0098041_10937442	3300006928	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVNTESSVSWVTGIGIAAIVVILAAALAKAKCCKK*
Ga0114932_101219662	3300009481	Deep Subsurface	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVTTESSVSWVTGIGIAAIVAILAAAVYKSKCCKK*
Ga0115011_101014504	3300009593	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAALAKSKCCKKK*
Ga0115011_103056974	3300009593	Marine	MDTIIKGASSLVPATKEIIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAAVAKAKCCKK*
Ga0115011_103422942	3300009593	Marine	MDKLLKGAVDTLPAAKELIEVQEALPLPEPVTTESSVSWTTGIGIAAIVLVLAAALAKAKCCKK*
Ga0115011_107009523	3300009593	Marine	MDKLLKGAVDTLPAAKELIEVQEALPLPEPVTTESGVSWTTGIGIAAIVLVLVAALAKAKCCKK*
Ga0115011_108868442	3300009593	Marine	MNKLIKGAVDTVPESVKTVIDVEEVLPLPEPESGVSWTTGIGIAAIVLILAAALAKYKCCKK*
Ga0115011_115909673	3300009593	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPESGVSWTTGIGIGAIVLILAAALAKAKCCKK*
Ga0115011_120905632	3300009593	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPVNTESSVSWTTGIGIAAIVLVLAAALAKAKCCKK*
Ga0115105_106199642	3300009679	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAALAKAKCCKKK*
Ga0115012_102739553	3300009790	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVVILAAALAKAKCCKK*
Ga0115012_109275523	3300009790	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPEPEGIGVGTGIGIAALVLIVAAAFAKYKCKCKK*
Ga0115012_109820731	3300009790	Marine	LKGAVDTMPAAKELIEVQEALPLPEPVNTESSVSWVTGIGIAAIVAILAAAVYKSKCCKK
Ga0115012_113440752	3300009790	Marine	MNKLIKGAVDVVPESVKTVIEVEEVLPLPEPQGGFPWCGVGIGVGVVVLAAVCAKLYKCTAKK*
Ga0115012_118104481	3300009790	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALAKS
Ga0160422_100082265	3300012919	Seawater	MDKLLKGAVDAMPAAKELIEVQEALPLPEPESGVSWTTGIGLSALVLIIAAAFAKCRCKCKK*
Ga0160423_105800812	3300012920	Surface Seawater	MDKLLKGAVDTLPATKELIEVQEALPLPEPESGVSWTTGIGIAAIVVILAAAFAKYKCKK
Ga0160423_108310133	3300012920	Surface Seawater	LKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVLVLAAALAKAKCCKK*
Ga0163180_102386484	3300012952	Seawater	MDKLLKGAVDSVPAAKELIEVQEALPLPESVTTESSVSWTTGIGIAALVAILAAAVYKSKCCKK*
Ga0163180_106203362	3300012952	Seawater	MDKLLKGAVDTLPAAKELIEVQEALPLPEPESGVSWTTGIGIGAIVLILAAAFAKYKCKK
Ga0163179_105080793	3300012953	Seawater	MDKLLKGAVDTLPAAKELIEVQEALPLPEPVTTESSVSWVTGIGIAAIVAILAAAVYK
Ga0163179_109793422	3300012953	Seawater	MDKLLKGAVDTLPAAKQIIEVQEALPLPEPKSEGIGVGTGIGMGVIVLILAAAFAKYKCKK*
Ga0163179_115208402	3300012953	Seawater	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVTTESSVSWVTGIGIAAIVAILAAAVYK
Ga0181383_10397201	3300017720	Seawater	LKGAVDSVPAAKELIEVQEALPLPELVTTESSVSWVTGIGIAAIVAILAAAVYKSKCCKK
Ga0181383_11077723	3300017720	Seawater	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAALVVIVAAAVYKSKCCKKK
Ga0181415_10318952	3300017732	Seawater	METVIKGASALVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAALAKAKCCKKK
Ga0181405_10678123	3300017750	Seawater	MDKLLKGAVDSVPAAKELIEVQEALPLPELVTTESSVSWVTGIGIAAIVAILAAAVYKSKCCKK
Ga0181405_11040553	3300017750	Seawater	HNKLNEVTMDKLLKGAVDSVPAAKELIEVQEALPLPEPVTTESGVSWTTGIGIGVIVLILAAAFAKYKCKK
Ga0181407_11676322	3300017753	Seawater	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGVVALVVILAAAFAKYKCKK
Ga0181414_11853763	3300017759	Seawater	MDKLLKGAVDTMPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVVVLAAALAKSKCCKKK
Ga0181406_12355471	3300017767	Seawater	METVIKGASALVPATKELIEVEQALPLPEPESGVSWTTGIGVVALVVIVAAAVYKSKFCKKK
Ga0211663_10036497	3300020292	Marine	MDKLLKGAVDAMPAAKELIEVQEALPLPEPESGVSWTTGIGLSALVLIIAAAFAKCRCKCKK
Ga0211706_10307044	3300020345	Marine	MDKLLKGAVDTLPATKEIIEVQDALPLPEPESGVSWTTGLGIAGIVLILAAAVYKSKCCK
Ga0211600_10733332	3300020348	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGVGAIVLILAAAFAKYKCKK
Ga0211652_100242322	3300020379	Marine	METVIKGASALVPATKELIEVEQALPLPEPESGVSWTTGIGIAALVVIVAAAVYKSKCCKKK
Ga0211652_100774123	3300020379	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAALAKAKCCKKK
Ga0211652_101479142	3300020379	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVLILAAALAKAKCCK
Ga0211652_101522372	3300020379	Marine	METVIKGAASLVPATKEIIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAALAKSKCCKKK
Ga0211652_101659762	3300020379	Marine	MDKLLKGAVDTMPAAKEIIEVQEALPLPEPESGVSWTTGIGIAAIVLILGAAVAKYKCKCKK
Ga0211652_102431711	3300020379	Marine	KLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALAKSKCCNK
Ga0211705_102899702	3300020395	Marine	MDTIIKGASSLVPATKEIIEVEQALPLPEPESGVSWTTGIGIAAIVLILAAAVAKAKCCK
Ga0211644_100116136	3300020416	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALAKYKCK
Ga0211653_101013252	3300020421	Marine	METVIKGASSLVPATKELIEVEQALPLPLPEPESGVSWTTGIGLAAIVLILAAALAKAKCCKK
Ga0211653_102681193	3300020421	Marine	METVIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVVILAAAVYKSKCCK
Ga0211653_103545182	3300020421	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLVLA
Ga0211564_101651713	3300020445	Marine	METVIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLILAAAVAKAKCCK
Ga0211564_101826103	3300020445	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIGAIVLILAAAFAKYKCKK
Ga0211564_102506444	3300020445	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIGAIVIILAAALAKAKCCK
Ga0211564_102693492	3300020445	Marine	MDKLLKGAVDTLPATKELIEVQEALPLPEPESGGVSVGTGLGIAAIVLILAAAAAKYKCKCKK
Ga0211642_104042643	3300020449	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAALAKSKCCKKK
Ga0211642_104210941	3300020449	Marine	MDKLLKGAVDAMPAAKELIEVQEALPLPEPESGVSWTTGIGLSALVLIIAAA
Ga0211643_101480975	3300020457	Marine	METVIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVVILAAAFAKYKCKK
Ga0211643_101580652	3300020457	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGVSWTTGIGIAAIVLVLAAALAKAKCCK
Ga0211643_101871541	3300020457	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLILAAAVAKAKCCK
Ga0211643_106237191	3300020457	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALA
Ga0211579_104312693	3300020472	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIGAIVLILAAALAKAKCCK
Ga0211579_104444463	3300020472	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALVKSKCCNKK
Ga0211579_104872443	3300020472	Marine	MDKLLKGAVDSVPAAKELIEVQDALPLPEPESGVSWTTGIGIGAIVVILAAAIYKSKCCK
Ga0209992_101740182	3300024344	Deep Subsurface	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVTTESSVSWVTGIGIAAIVAILAAAVYKSKCCKK
Ga0208158_10214273	3300025110	Marine	MNKLIKGAVDVVPESVKTVIEVEEVLPLPEPQGGFPWCGVGIGVGVVVLAAVCAKFYKCTAKK
Ga0209232_10591475	3300025132	Marine	METVIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGLAAIVVILAAAFAKYKCKK
Ga0209232_11710602	3300025132	Marine	MDTIIKGASSLVPATKELIEVEQALPLPEPESGVSWTTGIGIAAIVLILAAALAKSKCCK
Ga0209232_11773743	3300025132	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALAKSKCCNKK
Ga0208261_10319634	3300026076	Marine	TLPAAKELIEVQEALPLPEPVTTESSVSWTTGIGIAALVAILAAAFVKYKCKCKK
Ga0208261_11046162	3300026076	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPESVTTESSVSWTTGIGIAAIVAILAAAVYKSKCCKK
Ga0208749_10156592	3300026077	Marine	MDKLLKGAVDSVPATKELIEVQEALPLPEPESGVSWTTGIGVAAIVLILAAAFAKYKCKK
Ga0208749_10539294	3300026077	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPESGGLTWGTGIGIAAIVVVLAAALAKSKCCNKK
Ga0208749_11087951	3300026077	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVTAESSVSWTTGIGIAAIVVILAAALAKSKCCKK
Ga0209359_101403541	3300027830	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVTTESSVSWTTGIGIAALVAILAAAVYKSKCCKK
Ga0209404_100767661	3300027906	Marine	VPATKEIIEVEQALPLPEPESGVSWTTGIGIAAIVLVLAAALAKSKCCKKK
Ga0209404_102216114	3300027906	Marine	MDKLLKGAVDSVPAAKELIEVQEALPLPEPVTTESGVSWTTGIGIAAIVVILAAALAKSKCCKK
Ga0209404_102471081	3300027906	Marine	MDKLLKGAVDTLPAAKELIEVQEALPLPEPVTTESSVSWTTGIGIAAIVLVLAAALAKAKCCKK
Ga0209404_105206552	3300027906	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPESGVSWTTGIGIGAIVLILAAALAKAKCCK
Ga0209404_105254542	3300027906	Marine	MNKLIKGAVDTVPESVKTVIDVEEVLPLPEPESGVSWTTGIGIAAIVLILAAALAKYKCCKK
Ga0209404_107570472	3300027906	Marine	MDKLLKGAVDTMPAAKELIEVQEALPLPEPVTTESGVSWTTGIGIAAIVL
Ga0315332_100880374	3300031773	Seawater	MDKLLKGAVDTLPAAKELIEVQEALPLPEPVTTESSVSWVTGIGIAAIVAILAAAVYKSKCCKK
Ga0315331_101022423	3300031774	Seawater	METVIKGASSLVPATKEIIEVEQALPLPEPESGVSWTTGIGLAAIVVILAAAFAKYKCKK
Ga0315331_102145473	3300031774	Seawater	MDKLLKGAVDTLPAAKELIEVQEALPLPEPVTTESSVSWTTGIGVAAIVAILAAAVYKSKCCKK
Ga0315331_108510733	3300031774	Seawater	MESIIKDLPIPKEVIEVQEALPLPEPVTTESSVSWTTGIGVAAIVAILAAAVYKSKCCKK
Ga0315316_102368843	3300032011	Seawater	MDKLLKGAVDTMPAAKELIEVQEALPLPEPEPQGIGVGTGIGIAAIVLILAAALAKSKCCKKK
Ga0315330_104214232	3300032047	Seawater	METVIKGASSLVPATKEIIEVEQALPLPEPESGVSWTTGIGLAAIVVILAAAFAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103394

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences