NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F103400

Metagenome Family F103400

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103400
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 73 residues
Representative Sequence LATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLSGYPYVDEQTNE
Number of Associated Samples 84
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 80.00 %
% of genes near scaffold ends (potentially truncated) 98.02 %
% of genes from short scaffolds (< 2000 bps) 92.08 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (95.050 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(49.505 % of family members)
Environment Ontology (ENVO) Unclassified
(90.099 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.099 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 7.14%    β-sheet: 0.00%    Coil/Unstructured: 92.86%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF07591PT-HINT 2.97
PF01041DegT_DnrJ_EryC1 1.98
PF13884Peptidase_S74 1.98
PF13385Laminin_G_3 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 1.98
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 1.98
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 1.98
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 1.98
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 1.98
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 1.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A95.05 %
All OrganismsrootAll Organisms4.95 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000155|SI36aug09_200mDRAFT_c1023879Not Available512Open in IMG/M
3300000167|SI39nov09_120mDRAFT_c1074658Not Available615Open in IMG/M
3300000172|SI34jun09_200mDRAFT_c1041375Not Available852Open in IMG/M
3300000188|SI60aug11_150mDRAFT_c1009588All Organisms → Viruses → Predicted Viral1542Open in IMG/M
3300002483|JGI25132J35274_1036453Not Available1100Open in IMG/M
3300002484|JGI25129J35166_1038663Not Available969Open in IMG/M
3300002514|JGI25133J35611_10125131Not Available729Open in IMG/M
3300002518|JGI25134J35505_10028270Not Available1611Open in IMG/M
3300002760|JGI25136J39404_1002828Not Available2852Open in IMG/M
3300003539|FS891DNA_10370587Not Available803Open in IMG/M
3300004111|Ga0008651_10189586Not Available625Open in IMG/M
3300005424|Ga0066826_10146961Not Available835Open in IMG/M
3300005425|Ga0066859_10261869Not Available504Open in IMG/M
3300005430|Ga0066849_10275317Not Available646Open in IMG/M
3300005508|Ga0066868_10181138Not Available649Open in IMG/M
3300005508|Ga0066868_10251570Not Available537Open in IMG/M
3300005516|Ga0066831_10031717Not Available1433Open in IMG/M
3300005523|Ga0066865_10072686Not Available1221Open in IMG/M
3300005593|Ga0066837_10174521Not Available774Open in IMG/M
3300005595|Ga0066833_10026880Not Available1694Open in IMG/M
3300005595|Ga0066833_10099708Not Available798Open in IMG/M
3300005606|Ga0066835_10296339Not Available559Open in IMG/M
3300005658|Ga0066842_10005160Not Available2544Open in IMG/M
3300005838|Ga0008649_10306819Not Available593Open in IMG/M
3300006012|Ga0066374_10261387Not Available508Open in IMG/M
3300006331|Ga0068488_1234331Not Available894Open in IMG/M
3300006737|Ga0098037_1184310Not Available689Open in IMG/M
3300006738|Ga0098035_1021688Not Available2497Open in IMG/M
3300006738|Ga0098035_1094423Not Available1046Open in IMG/M
3300006738|Ga0098035_1242793All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300006738|Ga0098035_1247854Not Available587Open in IMG/M
3300006750|Ga0098058_1036120Not Available1422Open in IMG/M
3300006754|Ga0098044_1278002Not Available644Open in IMG/M
3300006924|Ga0098051_1136176Not Available652Open in IMG/M
3300006924|Ga0098051_1176780Not Available561Open in IMG/M
3300006925|Ga0098050_1028992Not Available1509Open in IMG/M
3300006925|Ga0098050_1125215Not Available652Open in IMG/M
3300007992|Ga0105748_10509069Not Available526Open in IMG/M
3300008050|Ga0098052_1289628Not Available620Open in IMG/M
3300009705|Ga0115000_10534559Not Available735Open in IMG/M
3300009706|Ga0115002_10731759Not Available696Open in IMG/M
3300012950|Ga0163108_10309131Not Available1018Open in IMG/M
3300012952|Ga0163180_11518252Not Available560Open in IMG/M
3300017704|Ga0181371_1085319Not Available511Open in IMG/M
3300017957|Ga0181571_10874742Not Available530Open in IMG/M
3300018418|Ga0181567_10935261Not Available544Open in IMG/M
3300020246|Ga0211707_1043381Not Available609Open in IMG/M
3300020326|Ga0211561_1058086Not Available832Open in IMG/M
3300020338|Ga0211571_1107233Not Available644Open in IMG/M
3300020353|Ga0211613_1093901Not Available706Open in IMG/M
3300020364|Ga0211538_1129812Not Available736Open in IMG/M
3300020378|Ga0211527_10197253Not Available563Open in IMG/M
3300020390|Ga0211555_10401150Not Available509Open in IMG/M
3300020407|Ga0211575_10446221Not Available535Open in IMG/M
3300020414|Ga0211523_10176072Not Available891Open in IMG/M
3300020414|Ga0211523_10356272Not Available595Open in IMG/M
3300020417|Ga0211528_10341891Not Available557Open in IMG/M
3300020430|Ga0211622_10269935Not Available728Open in IMG/M
3300020441|Ga0211695_10112884Not Available914Open in IMG/M
3300020451|Ga0211473_10071879All Organisms → cellular organisms → Bacteria1749Open in IMG/M
3300020451|Ga0211473_10616378Not Available548Open in IMG/M
3300020470|Ga0211543_10056699Not Available2058Open in IMG/M
3300020470|Ga0211543_10434682Not Available628Open in IMG/M
3300020478|Ga0211503_10266674Not Available944Open in IMG/M
3300021089|Ga0206679_10440965Not Available687Open in IMG/M
3300022227|Ga0187827_10074617Not Available2601Open in IMG/M
3300022227|Ga0187827_10220650Not Available1272Open in IMG/M
3300022227|Ga0187827_10646951Not Available609Open in IMG/M
(restricted) 3300022888|Ga0233428_1165777Not Available751Open in IMG/M
(restricted) 3300024336|Ga0233447_1071266Not Available1089Open in IMG/M
(restricted) 3300024336|Ga0233447_1187236Not Available535Open in IMG/M
3300025072|Ga0208920_1044988Not Available891Open in IMG/M
3300025096|Ga0208011_1075489Not Available744Open in IMG/M
3300025112|Ga0209349_1192987Not Available524Open in IMG/M
3300025125|Ga0209644_1023487Not Available1348Open in IMG/M
3300025127|Ga0209348_1106927Not Available863Open in IMG/M
3300025645|Ga0208643_1183395Not Available507Open in IMG/M
3300025659|Ga0209249_1096109Not Available891Open in IMG/M
3300026079|Ga0208748_1067268Not Available944Open in IMG/M
3300026079|Ga0208748_1123150Not Available631Open in IMG/M
3300026186|Ga0208128_1007471All Organisms → Viruses → Predicted Viral3079Open in IMG/M
3300026186|Ga0208128_1022233All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1629Open in IMG/M
3300026209|Ga0207989_1043118Not Available1293Open in IMG/M
3300026210|Ga0208642_1022933Not Available1670Open in IMG/M
3300026253|Ga0208879_1100012Not Available1249Open in IMG/M
3300026260|Ga0208408_1071952Not Available1075Open in IMG/M
3300026261|Ga0208524_1036294Not Available1485Open in IMG/M
3300026261|Ga0208524_1092439Not Available815Open in IMG/M
3300027714|Ga0209815_1138776Not Available783Open in IMG/M
3300027801|Ga0209091_10434628Not Available586Open in IMG/M
3300027827|Ga0209035_10405171Not Available668Open in IMG/M
3300027847|Ga0209402_10457950Not Available754Open in IMG/M
3300028436|Ga0256397_1012903Not Available882Open in IMG/M
3300029319|Ga0183748_1124087Not Available553Open in IMG/M
3300032011|Ga0315316_10010816Not Available6866Open in IMG/M
3300032132|Ga0315336_1258500Not Available606Open in IMG/M
3300032277|Ga0316202_10447027Not Available606Open in IMG/M
3300032278|Ga0310345_10507058Not Available1152Open in IMG/M
3300032278|Ga0310345_11083737Not Available783Open in IMG/M
3300032820|Ga0310342_101163539Not Available911Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine49.50%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine21.78%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine6.93%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater5.94%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.97%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.97%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.98%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.99%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.99%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine0.99%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.99%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.99%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.99%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.99%
Diffuse Hydrothermal Flow Volcanic VentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000155Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 200mEnvironmentalOpen in IMG/M
3300000167Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120mEnvironmentalOpen in IMG/M
3300000172Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 200mEnvironmentalOpen in IMG/M
3300000188Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 60 08/10/11 150mEnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300002484Marine viral communities from the Pacific Ocean - ETNP_2_130EnvironmentalOpen in IMG/M
3300002514Marine viral communities from the Pacific Ocean - ETNP_6_85EnvironmentalOpen in IMG/M
3300002518Marine viral communities from the Pacific Ocean - ETNP_6_100EnvironmentalOpen in IMG/M
3300002760Marine viral communities from the Pacific Ocean - ETNP_6_1000EnvironmentalOpen in IMG/M
3300003539Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS891_Anemone_DNAEnvironmentalOpen in IMG/M
3300004111Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_200m_DNAEnvironmentalOpen in IMG/M
3300005424Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49EnvironmentalOpen in IMG/M
3300005425Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199EnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300005508Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259EnvironmentalOpen in IMG/M
3300005516Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49BEnvironmentalOpen in IMG/M
3300005523Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265EnvironmentalOpen in IMG/M
3300005593Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86EnvironmentalOpen in IMG/M
3300005595Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47BEnvironmentalOpen in IMG/M
3300005606Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84EnvironmentalOpen in IMG/M
3300005658Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF86AEnvironmentalOpen in IMG/M
3300005838Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNAEnvironmentalOpen in IMG/M
3300006012Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_AAIW_ad_750m_LV_AEnvironmentalOpen in IMG/M
3300006331Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000mEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300012950Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaGEnvironmentalOpen in IMG/M
3300012952Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 MetagenomeEnvironmentalOpen in IMG/M
3300017704Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaGEnvironmentalOpen in IMG/M
3300017957Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018418Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020246Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)EnvironmentalOpen in IMG/M
3300020326Marine microbial communities from Tara Oceans - TARA_B100002003 (ERX556099-ERR599004)EnvironmentalOpen in IMG/M
3300020338Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX555920-ERR599099)EnvironmentalOpen in IMG/M
3300020353Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)EnvironmentalOpen in IMG/M
3300020364Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)EnvironmentalOpen in IMG/M
3300020378Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)EnvironmentalOpen in IMG/M
3300020390Marine microbial communities from Tara Oceans - TARA_B100002049 (ERX555953-ERR598985)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020407Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)EnvironmentalOpen in IMG/M
3300020414Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020430Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)EnvironmentalOpen in IMG/M
3300020441Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)EnvironmentalOpen in IMG/M
3300020451Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)EnvironmentalOpen in IMG/M
3300020470Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)EnvironmentalOpen in IMG/M
3300020478Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)EnvironmentalOpen in IMG/M
3300021089Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022888 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MGEnvironmentalOpen in IMG/M
3300024336 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MGEnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025127Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025659Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_200m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026079Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026186Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF51B (SPAdes)EnvironmentalOpen in IMG/M
3300026209Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)EnvironmentalOpen in IMG/M
3300026210Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251 (SPAdes)EnvironmentalOpen in IMG/M
3300026253Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026260Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)EnvironmentalOpen in IMG/M
3300026261Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61 (SPAdes)EnvironmentalOpen in IMG/M
3300027714Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027827Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028436Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3EnvironmentalOpen in IMG/M
3300029319Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032132Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI36aug09_200mDRAFT_102387923300000155MarineLATPPDGTKLSLGKLGRATAVGNSDYISKTSLNSSARDSGTGKVSLSDFYISAIDNTLNGYPYVDEQTNEIYEMTFTNENSLF
SI39nov09_120mDRAFT_107465823300000167MarineLATPTAGSKLSLGKLGRATAVDNANYTSKTSLNSCARDSSTGKASLSDFYISAVNSTLDGYPYVDEQTNEIYEL
SI34jun09_200mDRAFT_104137513300000172MarineLATIPTGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKTSLSDFYIGSVDNTLDGYPYVDEQTNETYTLTFTNEN
SI60aug11_150mDRAFT_100958813300000188MarineLATPPDGTKLSLGKLGRATAVGNSDYISKTSLNSSARDSGTGKVSLSDFYISAIDNTLNG
JGI25132J35274_103645313300002483MarineLATPPKGTKLSLGKLGRATNVANSDDTSKTSLNDAGRDSGTGRTKISDFYIGSVDNSLTGNTYVDEQTNEIYTMTFGDEN
JGI25129J35166_103866313300002484MarineLATPTDGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTGRTKISDFYIGSVDNTLDGYPYVDEQTNETYTLTFTNENSLFQSRIGG
JGI25133J35611_1012513123300002514MarineLATPPAGTKLSLGKLGRATAVGNSDYISKTSLNSCARDSSTGKASLGDFYISAVVNELTGYGWVDEQTNETYEL
JGI25134J35505_1002827033300002518MarineLATPPAGTKLSLGKLGRATAVDNANYISRTSLNDCARDSGTATTNLSNFYVGAVDDALDGYPYVDEQTNETYEVTFTN
JGI25136J39404_100282813300002760MarineLATPTDGTKLSLGKLGRATAVGNSDYTSKTSLNSAARDSSTGRTKISDFYIGSVDNTLDGYPYVDEQTNETYTLTFT
FS891DNA_1037058713300003539Diffuse Hydrothermal Flow Volcanic VentLATPPAGTKLSLGKLGRATAVGNSDYTSKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQTNETCTM
Ga0008651_1018958613300004111MarineLATPTAGSKLSLGKLGRATAVDNANYTSKTSLNSCARDSSTGKASLSDFYISAVNSTLDG
Ga0066826_1014696113300005424MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLSGYPYVDEQTNE
Ga0066859_1026186913300005425MarineLATPTAGSKLSLGKLGRATAVDNSDYTTKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQTNEIYT
Ga0066849_1027531713300005430MarineLATPPKGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTGKTSIGDFYIGSVDNTLDG
Ga0066868_1018113823300005508MarineLATPPAGTKLSLGKLGRATAVGNSDYISKTSLNSCARDSSTGKASLGDFYISAVVNELTGYGWVDEQTNETY
Ga0066868_1025157023300005508MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLDGYPY
Ga0066831_1003171723300005516MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLDGYPYVDEQTNETYEINFTNENSLFTSRIAAR
Ga0066865_1007268613300005523MarineLATPPKGTKLSLGKLGRATNVANSDDTSKTSLNDAGRDSGTGRTKISDFYIGSVDNSLTGNTYVDEQTNEIYTMTFGDENSLFE
Ga0066837_1017452113300005593MarineLATPPAGTALSLGKLGRATAVGNSDYTSATSLNDCARDSGTAATNLSNFYIGAVDSTLTGYLY
Ga0066833_1002688013300005595MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLGDFYISAVVNEL
Ga0066833_1009970813300005595MarineLATPPAGTALSLGKLGRATAVGNSDYTSATSLNDCARDSGTAATNLSNFYIGAVDSTLTG
Ga0066835_1029633913300005606MarineLPSQGDNLSLAKLGRATAVGNSDYTSQTSLNSAGRDSGTGETKLSEFYISAVDNSITGNTYVDE
Ga0066842_1000516043300005658MarineLATPTAGSKLSLGKLGRATAVGNSDYTSKTSLNSAARDSGTGKASLGDFYIGSVDSTLDGYPYVDEQTNETYTLTFTNENSLFQSRIGGRY
Ga0008649_1030681913300005838MarineLATIPTGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKTSLSDFYIGSVDNTLDGYPYVDEQTNE
Ga0066374_1026138723300006012MarineLATPPAGTRLSLGKLGRATAVDNSDYTTKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQTNENYEITFTNANSLFTSRI
Ga0068488_123433113300006331MarineLATPPAGTKLSLGKLGRATAVDNANHTSKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQTNENYEITFTDANSLFTSL*
Ga0098037_118431013300006737MarineMRIFFWRTFLATPPKGTKLSLGKLGRATAVGNSDYISKTSLNDAARDSGTDKTSISDFYVGAVDATIDGYP
Ga0098035_102168833300006738MarineLATPTAGSKLSLGKLGRATAVGNSDYTSKTSLNSAARDSGTGKASLGDFYIGSVDSTLDGYPYVDEQTNETYTLTFTNENSLFQSRIGG
Ga0098035_109442313300006738MarineLATATAGSKLSLGKLGRATAVGNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLDGYPYVDEQTNETYTLTFTNENSLFQSRIGGRYQN
Ga0098035_124279323300006738MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKSSLSDFYISAVDNALDGYPYVDEQTNEIYTMTFTNANSSFASRI
Ga0098035_124785413300006738MarineLATPPAGTKLSLGKLGRATAVDNANYTSKTSLNDCARDSSTGKASLGDFYISAVDNTLDGYPY
Ga0098058_103612013300006750MarineLATPPNGTALSLGKLGRATAVGNSDYISATSLNDCARDSGTAATNLSNFYIGAVDSTLTGYQYVDESTNETFEVTFTDENSLFTSRIAAR
Ga0098044_127800213300006754MarineLATPPAGTSLSLGKLGRATAVDNSDYTTKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVD
Ga0098051_113617613300006924MarineLATPTDGTKLSLGKLGRATGKTSNYTTKTSLNDAGRDSGTGKTSISDFYIGSVDNTLDGYPYVDEQTN
Ga0098051_117678023300006924MarineLATPPDGTKLSLGKLGRATAVGNSNYTSKTSLNSAGRDSGTSKTSLSDFYIGSVDSTLDGYP
Ga0098050_102899233300006925MarineLATPTAGSKLSLGKLGRATAVGNSDYISKTSLNSCARDSSTGKSSLSDFYISAVDNALDGYPYVDEQ
Ga0098050_112521513300006925MarineLATPTAGSKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKSSLSDFYISAVDNALDGYPYVDEQ
Ga0105748_1050906923300007992Estuary WaterMRIFIWRTFLAIPPKGTKLSLGKLGRATAVGNSDYTSKTSLNSAARDSGTGKTSIGDFYIGSVD
Ga0098052_128962823300008050MarineMRIFFWRTFLATPPDGTKLSLGKLGRATAVGNSDYTSKTSLNSAGRDSGTGKTSISDFYIGSVDNTLDGYPYVDEQTNETYT
Ga0115000_1053455913300009705MarineLASPTDGDKLSLGKLGRATAVGNSNYTSKTSLNSAGRDSGTGKTSIGDFYVGAVDATMDGYPYVDEQTNEVYELTFTNSNTLFDSRVK
Ga0115002_1073175923300009706MarineLATPTAGSKLSLGKLGRTTAVDNSNYTSKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQTNEIYT
Ga0163108_1030913123300012950SeawaterLATPTDGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTGRTKISDFYIGSVDN
Ga0163180_1151825223300012952SeawaterLATPPNGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTSKTSLSDFYIGSVDNTLDGYPYVDEQTNEIYTLTFGDENSLFQSRIGGRYQ
Ga0181371_108531923300017704MarineLATPPAGTKLSLGKLGRATAVGNSDYTSKTSLNSAARDSGTGKASLGDFYIGSVDSTLDGYPYVDEQTNETYTLTFTNENSLF
Ga0181571_1087474213300017957Salt MarshLATPPNGTKLSLGKLGRATNVGNSNYTSKTSLNSAGRDSGTSKTSISDFYIGSVDNTLDGYPY
Ga0181567_1093526123300018418Salt MarshLATPPNGTKLSLGKLGRANNVGNSNYTSKTSLNSDGRDSGTSKTSISDFYIGSVDNTFDGYPYVDEQTNEIYTMTFGDENSLFQSRI
Ga0211707_104338113300020246MarineMCLFCVSFLWSFFWETFLATPPNGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTARTKLSEFYLESVDNSIDGYAYVDEQTNET
Ga0211561_105808613300020326MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKSSLSDFYISAVVDSLDGYPYVDEQTN
Ga0211571_110723323300020338MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLDGYPYVDEQTNETYTMTFTN
Ga0211613_109390113300020353MarineLATPPDGTKLSLGKLGRATAVGNSNYTSKTSLNSAGRDSSTGKTKLSDFYIGSVDSTLSGYPYVDEQTNETYTM
Ga0211538_112981223300020364MarineLATPPAGTSLSLGKLGRATAVDNSDYTTKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQTNEIYTMTFTNANSLFASR
Ga0211527_1019725323300020378MarineLATPPNGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTGKTSISDFYVGSVDST
Ga0211555_1040115013300020390MarineLATPPAGTSLSLGKLGRATAVDNSDYTTKTSLNSCARDSSTGKASLGDFYISAVVNDLDGYPYVDEQTNETYEIT
Ga0211659_1048537013300020404MarineLATPPDGTKLSLGKLGRATAVGNSNYTSKTSLNSAGRDSGTSKTSLSDFYIGSV
Ga0211575_1044622123300020407MarineLATPPAGTRLSLGKLGRATAVDNANYTTKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQ
Ga0211523_1017607213300020414MarineLATPPKGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTGKTSISDFYVGSVDSTIDGYPYVDEQTNETYELTFTNSNSLFDTRIK
Ga0211523_1035627213300020414MarineLATPPDGTKLSLGKLGRATAVGNSDYTSRTSLNSAGRDSGTGKTSLGDFFIGSVDDSLDGFQFVDEQTNETYTLTFGDENSLFQSRIGGRHQ
Ga0211528_1034189113300020417MarineLATPPDGTKLSLGKLGRATAVDNSDYTSKTSLNDAGRDSGTGKTSLSDFYLGSVDNSL
Ga0211622_1026993523300020430MarineLATPPNGTKLSLGKLGRATNVGNSDYTSKTSLNDAGRDSGTAKTKLSEFYLEAVDNSIDGFAYVDEQ
Ga0211695_1011288423300020441MarineLATPPNGTKLSLGKLGRATAVGNSDYTSKTSLNSAGRDSGTAKTSLSDFYIGSVDNTLSGFQYVDEQTNET
Ga0211473_1007187933300020451MarineLATPPNGTKLSLGKLGRATAVGNSNYTSKTSLNSAGRDSGTSKTSLSDFFIGSVDNTLDGYPYVDEQTNEIYTLTFGDENSLFQSRIGGR
Ga0211473_1061637813300020451MarineLATPPNGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTSKTSLSDFYIGSVDNTLDGYPYVDEQTNEIYTLTFG
Ga0211543_1005669933300020470MarineLATPPNGTKLSLGKLGRATNVGNSNYTSKTSLNSAGRDSGTSKTSISDFYIGSVDNTLDGYPYVDEQTN
Ga0211543_1043468223300020470MarineLATPPNGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTSKTSLSDFYIGSVDNTLDGYPYVDEQTN
Ga0211503_1026667433300020478MarineLATPTAGSKLSLGKLGRATAVGNSNYTSKTSLNDCARDSGTGKASIGDFYIGSVDNTLDGYPYV
Ga0206679_1044096513300021089SeawaterLATPPAGTKLSLGKLGRTTAVDNANHTSKTSLNSCARDSSTGKASLSDFYISAVVNSLDGYPYVDEQTNEIYTMTFTNANSLFASRI
Ga0187827_1007461743300022227SeawaterLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTL
Ga0187827_1022065013300022227SeawaterLATPPAGTKLSLGKLGRATAVDNANYTSKTSLNDCARDSSTGKASLGDFYISAVVNELTGYGWVDEQTNETY
Ga0187827_1064695123300022227SeawaterLATPTAGSKLSLGKLGRATAVGNSDYTSKTSLNSCARDSSTGKASLGDFYISAVVNELTGYGWADEQTNETYELT
(restricted) Ga0233428_116577713300022888SeawaterLATPTAGSKLSLGKLGRTTAVDNSNYTSKTSLNSCARDSSTGKASLGDFYISEVVNSLDGYPYVDEQTNEIYTMTFTNANSLF
(restricted) Ga0233447_107126623300024336SeawaterLATPPDGTKLSLGKLGRATAVGNSDYTSKTSLNSSARDSGTGKVSLSDFYISAIDNTLNGYPYVDEQTNEI
(restricted) Ga0233447_118723623300024336SeawaterLATPTAGSKLSLGKLGRATAVDNANYTSKTSLNSCARDSSTGKASLSDFYISAVNSTLDGYPYVDEQTNEIYTLTVTNAN
Ga0208920_104498813300025072MarineLATPPNGTALSLGKLGRATAVGNSDYISATSLNDCARDSGTAATNLSNFYIGAVDSTLTG
Ga0208011_107548923300025096MarineLATPTAGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKASLGDFYISAVVNELTGYGWV
Ga0209349_119298713300025112MarineLATATAGSKLSLGKLGRATAVGNSDYTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLDGYPYVDEQTNETYTLTF
Ga0209644_102348713300025125MarineLATPTDGTKLSLGKLGRATAVGNSDYTSKTSLNSAARDSSTGRTKISDFYIGSVD
Ga0209348_110692713300025127MarineLATPPNGTKLSLGKLGRATNVGNSNNTSKTSLNSAGRDSGTGKTSLSDFYIGSVDNTLDGFPYVDEQTNEIYTMTFGDENSLFESR
Ga0208643_118339523300025645AqueousLATPPDGTKLSLGKLGRATAVGNSNYTSKTSLNDAGRDSGTGKTSLGDFYLGAVDTSLDGFQYV
Ga0209249_109610923300025659MarineLATIPTGTKLSLGKLGRATAVDNSDYTSKTSLNSCARDSSTGKTSLSDFYIGSVDNTLDGYPYVDEQTNETYTLTFTNE
Ga0208748_106726813300026079MarineLATPPAGTKLSLGKLGRATAVDNANYISKTSLNSCARDSSTGKASLGDFYISAVDNALDGYPYVDEQTNEN
Ga0208748_112315013300026079MarineLATPPTGTKLSLGKLGRATAVDNANYISKTSLNSCARDSSTGKASLGDFYISAVDSAL
Ga0208128_100747143300026186MarineLATPPAGTALSLGKLGRATAVGNSDYTSATSLNDCARDSGTAATNLSNFYIGAVDSTLTGYLYVDESTNETYEIT
Ga0208128_102223313300026186MarineLTTPIAGSKLSLGKLGRATAVDNSDHTSKTSLNSCARDSSTGKASLSDFYIGSVDNTLSGYPYVDEQTNETYEVTFTNSNTLFDS
Ga0207989_104311813300026209MarineLATPTDGTKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTDKTKVSDFYIGSVDNTLDGYPYVDEQTNETY
Ga0208642_102293313300026210MarineLATPPAGTALSLGKLGRATAVGNSDYTSATSLNDCARDSGTAATNLSNFYIGAVDSTLTGYL
Ga0208879_110001213300026253MarineLATPPTGTKLSLGKLGRATAVDNANYISKTSLNSCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQTN
Ga0208408_107195223300026260MarineMRILFWRTFLATPTKGSKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTGKTSISDFYIGSVDNSLD
Ga0208524_103629433300026261MarineLATPTAGSKLSLGKLGRATAVGNSDYTSKTSLNSAARDSGTGKASLGDFYIGSVDSTLDGYPYVDEQTNETYTLTFTNENSLFQSRIG
Ga0208524_109243913300026261MarineLATPPNGTALSLGKLGRATAVGNSDYTSATSLNDCARDSGTAATNLSNFYIGAVDSTLTGYLYVDESTNETYEITFTNEN
Ga0209815_113877623300027714MarineLATPTAGSKLSLGKLGRATAVGNSDYTSKTSLNSAARDSGTGKSSLSDFYIGSVDNTLDGYPYVDEQTNETYTMTFTNEN
Ga0209091_1043462813300027801MarineLATPTDGDKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTAKTKISDFYVATVDSTLDGYPYVDEQTNETYEVTFTNSNTL
Ga0209035_1040517113300027827MarineLATPPAGTKLSLGKLGRATAVDNANYTTKTSLNDCARDSSTGKASISDFYISAVVNS
Ga0209402_1045795023300027847MarineLATPTDGDKLSLGKLGRATAVGNSDYTSKTSLNDAGRDSGTAKTKISDFYVATVDSTLDGYPYVDEQTNETYEVTFT
Ga0256397_101290323300028436SeawaterLATPPDGTKLSLGKLGRATAVGNSNYISKTSLNSSARDSGTGKASLSDFYISAVDNTLSGYPYVDEQTNEIYEL
Ga0183748_112408723300029319MarineLATVPAGTNLSLGKLGRATNVDNSDNTSQTSLNSAARDSGTGAVSMSQFYIGSVDNSLTGFQFVDE
Ga0315316_1001081673300032011SeawaterLATPPRGTKLSLGKLGRATAVGNSDNTSKTSLNEAGRDSSTSKTKISDFFIGSVDNSLTGNQYVDE
Ga0315336_125850013300032132SeawaterLATPPAGTKLSLGKLGRTTAVDNANHTSKTSLNSCARDSSTGKASLSDFYISAVVNSLDGYPYVDEQ
Ga0316202_1044702723300032277Microbial MatMRIFIWRTFLAIPPKGTKLSLGKLGRATAVGNSDYTSKTSLNSAARDSSTGKTSIGDFYI
Ga0310345_1050705813300032278SeawaterLATPPNGTALSLGKLGRATPVDNNDYTSATSLNDCARDSGTAATNLSNFYIGAVDNTLTGYTYVDEQTNETYEVTFTDENSLFTS
Ga0310345_1108373723300032278SeawaterLATVPAGTKLSLGKLGRATAVDNANYTSKTSLNDCARDSSTGKASLGDFYISAVVNSLDGYPYVDEQT
Ga0310342_10116353933300032820SeawaterMPTPPAGTALSLGKLGRATAVDNANHTSTTSLNDCARDSSTGKTSLSDFYISAVVNSLDGYPYVDEQTNEIYELTFTNANS


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