NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F103488

Metagenome Family F103488

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F103488
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 46 residues
Representative Sequence DDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPLLQ
Number of Associated Samples 15
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 50.00 %
% of genes near scaffold ends (potentially truncated) 0.99 %
% of genes from short scaffolds (< 2000 bps) 0.99 %
Associated GOLD sequencing projects 13
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut
(99.010 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal proximal gut
(100.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 57.53%    β-sheet: 0.00%    Coil/Unstructured: 42.47%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300006226|Ga0099364_10172187Not Available2425Open in IMG/M
3300027864|Ga0209755_10600458Not Available958Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut99.01%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Proctodeal Segment → Termite Gut0.99%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001544Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1Host-AssociatedOpen in IMG/M
3300002125Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4Host-AssociatedOpen in IMG/M
3300002450Cornitermes sp. P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191 P3Host-AssociatedOpen in IMG/M
3300002462Microcerotermes parvus P4 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P4Host-AssociatedOpen in IMG/M
3300002508Microcerotermes parvus P1 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P1Host-AssociatedOpen in IMG/M
3300002552Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1Host-AssociatedOpen in IMG/M
3300002834Cornitermes sp. P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P4Host-AssociatedOpen in IMG/M
3300006226Microcerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3Host-AssociatedOpen in IMG/M
3300009784Embiratermes neotenicus P4 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P4Host-AssociatedOpen in IMG/M
3300009826Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1Host-AssociatedOpen in IMG/M
3300010049Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3Host-AssociatedOpen in IMG/M
3300027864Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027891Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)Host-AssociatedOpen in IMG/M
3300027904Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027984Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20163J15578_1053196433300001544Termite GutDDLYTIILKIYYTRYTIKLKICTQRFYYSSSKFSKFIQGKSPILQ*
JGI20165J26630_1059450623300002125Termite GutMKNDDLYTIILNTYYTPYTIKLKICTQRFYYSSSKFSKFIQGDVVSS
JGI24695J34938_1015961923300002450Termite GutILKIHYTLYTKKLKIFAQRFYYSSSKFSKFIQGKSPLLQQVASVS*
JGI24695J34938_1022310423300002450Termite GutDLYTIILKIYYTLYTIKLKICTQRFYYFSSKFSKFIQGKSPVLQ*
JGI24695J34938_1047888823300002450Termite GutKTDDLYTIILKIYYTLYTIKLKICTQRFYCSSSEFSKFIQGKSPVLQ*
JGI24695J34938_1051398513300002450Termite GutTDDLYTIILKIYYKLYTIKLKICTKRFYYSSSKFSKFIQGKSPVL*
JGI24695J34938_1053886013300002450Termite GutTIILKIYYTLYTIKLKICTQRFYYSTSKFSKFIEGKSILLLQ*
JGI24695J34938_1055468413300002450Termite GutDLYTIILKIYYTLYTIKLKMCTQRFYYSSSKFSKFIQGKSPLLQ*
JGI24695J34938_1058700823300002450Termite GutGLYTIILKIYYTLYTVKLKICTQRFYYSSPKFSKFIQGKSPVLQ*
JGI24702J35022_1079011413300002462Termite GutDDLYTIILKIYYTLYTIKLKICTQRFCYSSTKFSKFSQGKSPLLQ*
JGI24700J35501_1081597913300002508Termite GutKTDDLYTIILKIYYTLYTIKLKICTQRFCYSSTKFSKFSQGKSPLLQ*
JGI24694J35173_1012042323300002552Termite GutLDEGEWRVELKTDERYTIILKIYYTLYTIKLKICTQRFCCSSSKFSKFIQGKSPVLQ*
JGI24694J35173_1027216523300002552Termite GutTDDLYTIILKIYYKLYTIKLKICTQRFYYSSSHKFWKFIQGKSPVLQ*
JGI24694J35173_1038479113300002552Termite GutLYTIILKMYYTLYAIKLKICTQRFYYSSKFSKFVQGKSPVLQ*
JGI24694J35173_1038760313300002552Termite GutTDDLYTVILKIYYILYTIKLKICTQRFYYSSSKISKFIQGKSPLLQ*
JGI24694J35173_1044422023300002552Termite GutILKIYYTRYTIKLKICTQGFYYSSSKFSKFIQGKSSVLQ*
JGI24694J35173_1046222713300002552Termite GutDLYTIILKIYYTLYTIKLKICTQRFYYFSSKFLKFIQGKSPLLH*
JGI24694J35173_1046380413300002552Termite GutTDDLYTIILKIYYTLYTIKLKICTQSFYYSSSKYSKFILGKSPLLQ*
JGI24694J35173_1046567123300002552Termite GutDLYTIILKIYYTPYTIKLKICTQCFYYSSSEFSKFIQGKSPLIQ*
JGI24694J35173_1047108813300002552Termite GutDDLYTIILKIYYTLYTIKLKIRTQRFYYSSKFSKFIQGKSPLFSSWPLSLC*
JGI24694J35173_1049156613300002552Termite GutTDDLYTIILKIYYTLYTIKLKICTQSFNYSSSKFSKFIQGK*
JGI24694J35173_1051277613300002552Termite GutKTDDLYTIILKMYYTLYAIKLKICTQRFYYSSKFSKFVQGKSPVLQ*
JGI24694J35173_1052734513300002552Termite GutTIILKIYYTLYTIKLKICTQRFYYSXSKFLKFIQGKXPLLQ*
JGI24694J35173_1057089813300002552Termite GutKTDDLYTIILKIYYTLYTIKLKICTQRFYYSSKFSNFIQGKSVLLR*
JGI24694J35173_1058443913300002552Termite GutTDLYTIILKIYYKLYTIKLKICTQRFYYSSSSKFSKFFQGKSPLLQ*
JGI24694J35173_1071558313300002552Termite GutKNDDLYTIILKIYYTLYTIKLKIYTQRFYYSSSKFSKFIQGKSLLQ*
JGI24694J35173_1074312813300002552Termite GutKTDDLYTIILKIYYTLYTIKLKICTQSFNYSSSKFSKFIQGK*
JGI24694J35173_1077519023300002552Termite GutIILKIYYTLYIIKLKTCTQRFYYSSSFKFSKFIQGKSPLVQ*
JGI24694J35173_1079936513300002552Termite GutDDLYTIILKIYYTLYTIKLKICTQSFYYSSSKFLKFIESKSPLLQ*
JGI24694J35173_1081483113300002552Termite GutKTDDLYTIILKIYYTFYTTKLKICTQRFYCSSSKFSKFIQGKSPLL*
JGI24694J35173_1088590513300002552Termite GutTDDLYTIILKIYYTLYTIKLKICTQRFYFSSSKFSKFIQGKSPVLQ*
JGI24694J35173_1089206313300002552Termite GutMKTDDHYTIILKIYYTLCTIKLKIGTQRFYCXSSKFSKFIQGKSPVLQ*
JGI24696J40584_1224961223300002834Termite GutTDGLYTIILKIYYTLYTVKLKICTQRFYYSSPKFSKFIQGKSPVLQ*
JGI24696J40584_1231038823300002834Termite GutDDLYTIILKIYYTLYTIKLKIYTQRFYYSSYKFLKFIQDKSPVLQ*
JGI24696J40584_1232708013300002834Termite GutDLYTIILEIYYTLYTIKLKISTQIFYYSSSKFSKFIQGKSPLLQ*
JGI24696J40584_1235168113300002834Termite GutKTDDLYTIILKICYTLYTIKLKICTQRFYYSPSKFSKSIQGKSPVLQ*
JGI24696J40584_1239240313300002834Termite GutMEGRMKIDDLYTIILKIYYTLYTIKLKIHTQRFYYSSSKFSKFIQGKSPLL
JGI24696J40584_1254916913300002834Termite GutDDLYTIILKIYYTLFTFKLKTCTQRFYYSSFKFAKFIQGKSPLLQ*
JGI24696J40584_1265670413300002834Termite GutMKNTDDLYIIILKIYYTFYTVKLRICTQGFYSSSSKFSKFIQGKSPVLH*
JGI24696J40584_1266032513300002834Termite GutYTIILKIYYTLYTIKVKICTQRFYYSSSKFSEFIQGKSPLFQ*
JGI24696J40584_1267468813300002834Termite GutEWKVERKTDDLYTIILKIYYTLYTIKLKICRQSFYYSSSKFLKFIQGKYPLLQ*
JGI24696J40584_1269609913300002834Termite GutMKTDDLYTIIIKIYYTLYAIKLQICTQRFYYSSSKFSKYIQGKSPLVQ*
JGI24696J40584_1271296333300002834Termite GutTDDLYTIILKIYYTLYTIKLKIYTHRFYYSSSKFSKFIQGKSPLLQ*
JGI24696J40584_1277135013300002834Termite GutDDLYTIILKIYYTLYTIKLKIYTQGFYYSSCKFSKFIQGNSPLLQ*
JGI24696J40584_1277449323300002834Termite GutKTDHLYTIIPKIYYTLYTISLKICTQRFYYSSYKFSKFIQGKSPVLQ*
JGI24696J40584_1279180433300002834Termite GutMKTDGLRTIILKMYYTLYTIKMKICTQRFYYSSSKFSKFIQGKW
JGI24696J40584_1287712213300002834Termite GutDDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFTQDKSSLLQ*
JGI24696J40584_1289769913300002834Termite GutTDNLYTIILKIYYTFYTIKLKICTQRFYYSSKFSKFIQGKSPLRQ*
Ga0099364_1017218723300006226Termite GutMKTGDLYTIILKVYYTLYTIKLKICTQGFYYSSSKFSKFSQGKSPLV*
Ga0123357_1026006623300009784Termite GutMDDLYTENILYSTLYTIKLKICTQRFYYSSSKFSKFIQ
Ga0123357_1047396013300009784Termite GutHYSIENILYGTLYTIKLKIYTQRFYYSSSKISKFIQGKSPLLQ*
Ga0123355_1027045913300009826Termite GutMDDLYTENILYSTLYTIKLKICTQRFYYSSSKFSKFIQGKSPLL
Ga0123355_1144407613300009826Termite GutIENILYGTLYTIKLKIYTQRFYYSSSKISKFIQGKSPLLQ*
Ga0123356_1166438913300010049Termite GutCTENILYSTLYTIKLKTCTQRFYYSSSKFSKIIQGKSPLLQ*
Ga0209755_1011264923300027864Termite GutKTDDLYTIILKIYYTLYTIELKICTQSFYYSSSKFSKFIQGKSPVLQ
Ga0209755_1020378523300027864Termite GutTIILKIYYTLYTIKLKIYTQRFYYSSSKFSKFIQGKYPVLQ
Ga0209755_1027322513300027864Termite GutMKTDDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGK
Ga0209755_1027855233300027864Termite GutDDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPLLQ
Ga0209755_1029245913300027864Termite GutVDEGEWKVEXKTDDLYIIILKINYTLYTIQLKICTQRFYYSSSKFSKFIQGKSPL
Ga0209755_1030236623300027864Termite GutTDDLYTIILKIYYTLYTIKLKICTQRFYYSSKFSKFIQGKSPLVQ
Ga0209755_1031086513300027864Termite GutIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPVLQ
Ga0209755_1031282613300027864Termite GutERKTDDLYTIILKIYYTLYTVKLKICTQRFYYSSSKFSNFIQGKSPVLQ
Ga0209755_1031935213300027864Termite GutTEDLYTIILKIYYTLYTIKLKIYTQRFYYSSSIFSKFIKSPLLQ
Ga0209755_1038402913300027864Termite GutEWKLEWKTEDLYTIILKIYYTLYTIKLKIYTQRFYYSSSKFSKFIQGKSPVLQ
Ga0209755_1040232423300027864Termite GutKTDDLYTIILKIYYTLDTIKLKVYTQRFYYSSSKFSKFIEGKSPLLQ
Ga0209755_1040369613300027864Termite GutTDDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSLLFQ
Ga0209755_1040404123300027864Termite GutFILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQAKSPVLQ
Ga0209755_1043798313300027864Termite GutVEXKTDDLYTIILKIYYTLYTIKLKIYTQRFYYSSYKFLKFIQDKSPVLQ
Ga0209755_1045520813300027864Termite GutEWKVESKTDDLYTIILKINYTLYTIKLKKCTQRFYYSSSKFSRFIQGK
Ga0209755_1045753913300027864Termite GutDDLYTIILKIYYTLYTIKLKICTQRFYYSSCKFSKFIQGKSLLQ
Ga0209755_1046119413300027864Termite GutDEGEWKLEQKTDDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPLLQ
Ga0209755_1046863313300027864Termite GutTIILKIYYTLYTIKLKIFTQRLYYSSSKFSKFIQGKSPLLQ
Ga0209755_1051027213300027864Termite GutEWKVEXKTDDLYTIILKIYYTLYTIKLKRCTQRFYYSSSCKFSKFIQGKSPVLQ
Ga0209755_1052746313300027864Termite GutNLYTIILKIYYTLYTIKLKICTQRFYYSSSKYSKFIQGKFPLLQSLW
Ga0209755_1054932323300027864Termite GutTDDLYTIILKIYYTLYTIKLKICTQRFYYSSPKFSKFIQGKCPVLQ
Ga0209755_1055804233300027864Termite GutKTDDLYTIILKIYYTLYTVKLKICTQSFYYSSSKFSMFIQGKSPVLQ
Ga0209755_1056399113300027864Termite GutKTDDLYTIILKIYYTLYTVKLKICAQRFYYSSSKISKFIPGKSPLVQ
Ga0209755_1058703913300027864Termite GutDLYTIILKIYYTLYTIKLKIRTQRFYYSSSKFLKFIQGKSPLVQ
Ga0209755_1059649413300027864Termite GutKVEXKTDDLYTIILKIYYTPYTIKLKICTQCFYYSSSKFSKCVQGKSPLVQ
Ga0209755_1060045823300027864Termite GutILKIYYTLYTIKLKICTQRFYYSSLKFSKFIQGKSPVLQ
Ga0209755_1060046613300027864Termite GutTDHLYTVILKIYYTLYTIKLKICTQRFYYSSSSSKFSKFIQGKAHLLQ
Ga0209755_1060500113300027864Termite GutKTDDLYTFILKIYYTLYTIKLKICTQRFYYSSSIFPKFIRGKSPVLQ
Ga0209755_1061434013300027864Termite GutTDDLYTIILKIYYTLYTIKLKIRTQRFYYSSSKFSKFIQGKSHLLQ
Ga0209755_1062214313300027864Termite GutEGEWKVEXKTDDLYTIILKIYYTLYTVKLKICTQRFYYSSSSKFSQFIHGKSPVLQ
Ga0209755_1065136213300027864Termite GutDDLYNIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPLLQ
Ga0209755_1065321713300027864Termite GutKTDHLYTIILKIYYYTLYTIKLKICTQRFYYSSSKFSEFIHGKSPLLQ
Ga0209755_1066163813300027864Termite GutKTDDLYTIILKLYYTLYTIKLKICTQRFYYSSSKFSKFIQGESPLFQ
Ga0209755_1068748413300027864Termite GutVILKIYYTRYTIKLKICTQGFYYSSSKFSKFIQGKSSVLQ
Ga0209755_1071694513300027864Termite GutTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPVLQ
Ga0209755_1071910413300027864Termite GutKTDDLYIIILKIYYTLYTIKLKICTQRFYYSSSKLSKFIQGKSPVLQ
Ga0209755_1073945723300027864Termite GutKTDDLYTIILKIYHTLSTITLKICTQRFYYSSSKFSKFIQGKSPLLQ
Ga0209755_1076124913300027864Termite GutTDDLYTIILKIYYTLYTVKLKICTRFYYSSSKFSKFIQGKSPLLQ
Ga0209755_1077037113300027864Termite GutDLYTIILKIYYTLYTIKLKICTQRFYYYSSKFSKFFQGKSPLLQ
Ga0209755_1078236113300027864Termite GutTIILKIYYTLYTIKLKICTQRFYYSYSKFLKFIQGKSPLLQ
Ga0209755_1079130013300027864Termite GutDDLYTIILKIYYTLHTIKLKICTQRFYYSSSKFSKFIQGKSPVLQ
Ga0209755_1083707113300027864Termite GutVKLKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPVL
Ga0209755_1101781013300027864Termite GutIILKVYYTLYTIKLKICTQRFYYSSSKFSKFIQGKFPLLQ
Ga0209755_1120389313300027864Termite GutGEWKVEXKTDDLYTIILKIYYTLYTIKLKIYTQRFYYSSSSKFSKFIQGKSPLVQ
Ga0209628_1128880413300027891Termite GutMESRMKTDDLYTIIQKICYTLYTIKLKICTQRFYYSSSKFSKFIQGKSPLLQ
Ga0209737_1007145723300027904Termite GutMKTDDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIEGK
Ga0209629_1045984613300027984Termite GutDDLYTIILKIYYTLYTIKLKICTQRFYYSSSKFSKFIQGKSLLQ

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.