Metagenome / Metatranscriptome Family F103500

Basic Information
Family ID	F103500
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	81 residues
Representative Sequence	LPVETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Number of Associated Samples	75
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	1.98 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (96.040 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge (46.535 % of family members)
Environment Ontology (ENVO)	Unclassified (97.030 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (58.416 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.67% β-sheet: 20.00% Coil/Unstructured: 25.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13361	UvrD_C	1.98
PF14667	Polysacc_synt_C	0.99
PF04586	Peptidase_S78	0.99
PF06810	Phage_GP20	0.99
PF00589	Phage_integrase	0.99
PF09853	DUF2080	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
All Organisms	root	All Organisms	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
cellular organisms	root	All Organisms → cellular organisms	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	3.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.04 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3.96 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001592\|Draft_10028394	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3949	Open in IMG/M
3300002170\|JGI24711J26586_10084860	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	899	Open in IMG/M
3300006225\|Ga0082206_102158	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	4314	Open in IMG/M
3300009360\|Ga0118672_1075829	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	906	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	97.03%
Environmental	Environmental	2.97%

Habitat	Taxonomy	Distribution
Wastewater	Engineered → Wastewater	54.46%
Bioreactor	Engineered → Bioreactor	16.83%
Biotransformation	Engineered → Biotransformation	10.89%
Solid Waste	Engineered → Solid Waste	9.90%
Built Environment	Engineered → Built Environment	3.96%
Aquatic	Environmental → Aquatic	2.97%
Unclassified	Engineered → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	52.48%
Mixed Alcohol Bioreactor	Engineered → Biotransformation → Mixed Alcohol Bioreactor	10.89%
Continuous Culture	Engineered → Bioreactor → Continuous Culture	8.91%
Landfill	Engineered → Solid Waste → Landfill	7.92%
Anaerobic	Engineered → Bioreactor → Anaerobic	7.92%
Water Treatment Plant	Engineered → Built Environment → Water Treatment Plant	3.96%
Freshwater	Environmental → Aquatic → Freshwater	2.97%
Grass	Engineered → Solid Waste → Grass	1.98%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.98%
Unclassified	Engineered → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	52.48%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified	10.89%
Marine Sediment Inoculum	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum	8.91%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	7.92%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	7.92%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified	3.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.97%
Composting	Engineered → Solid Waste → Grass → Composting	1.98%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.98%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	52.48%
Unclassified	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified	10.89%
Unclassified	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified	8.91%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	7.92%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	7.92%
Unclassified	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.98%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	1.98%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.98%
Coalbed Water	Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water	0.99%
Unclassified	Engineered → Unclassified → Unclassified → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	46.53%
Biogas Fermentantion	Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion	10.89%
Anaerobic Biogas Reactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor	7.92%
Biogas Fermenter	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Biogas Fermenter	4.95%
Anaerobic Wastewater Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge	4.95%
Biogas Reactor	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor	4.95%
Mixed Substrate Biogas Reactor	Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Mixed Substrate Biogas Reactor	3.96%
Wastewater	Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater	3.96%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	2.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	1.98%
Solid Waste From Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Solid Waste From Bioreactor	1.98%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.98%
Coalbed Water	Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water	0.99%
Activated Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge	0.99%
Biogas Fermenter	Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Biogas Fermenter	0.99%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111018	Mesophilic bioreactor microbial communities at Bielefeld, Germany	Engineered	Open in IMG/M
3300001567	Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada	Engineered	Open in IMG/M
3300001592	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:	Engineered	Open in IMG/M
3300001975	Biogas fermenter microbial communities from the University of Hamburg, Germany	Engineered	Open in IMG/M
3300002164	Biogas fermentation microbial communities from Germany - Plant 1 DNA2	Engineered	Open in IMG/M
3300002167	Biogas fermentation microbial communities from Germany - Plant 4 DNA2	Engineered	Open in IMG/M
3300002168	Biogas fermentation microbial communities from Germany - Plant 3 DNA2	Engineered	Open in IMG/M
3300002170	Biogas fermentation microbial communities from Germany - Plant 3 DNA1	Engineered	Open in IMG/M
3300002173	Biogas fermentation microbial communities from Germany - Plant 2 DNA1	Engineered	Open in IMG/M
3300002174	Biogas fermentation microbial communities from Germany - Plant 2 DNA2	Engineered	Open in IMG/M
3300002391	Biogas fermentation microbial communities from Germany - Plant 2 RNA2 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300002392	Biogas fermentation microbial communities from Germany - Plant 3 RNA2 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300002898	Metagenome Biopara biogasfermenter May 2013 pooled	Engineered	Open in IMG/M
3300003667	Lithgow State Coal Mine Metagenomic Study (LSCM 3 Late (Sample 2))	Environmental	Open in IMG/M
3300005835	Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads	Engineered	Open in IMG/M
3300006225	Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 99 accuracy	Engineered	Open in IMG/M
3300006389	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gel_03_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006398	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Cas_03_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006588	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Met_03_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006592	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Leu_03_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300006598	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_H2B_01_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300009121	Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.A IDBA	Engineered	Open in IMG/M
3300009360	Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.B IBDA	Engineered	Open in IMG/M
3300009362	Syntrophic microbial communities from biogas reactors - R1.C13.But.A IBDA	Engineered	Open in IMG/M
3300009607	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C13 SIP DNA	Engineered	Open in IMG/M
3300009647	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA	Engineered	Open in IMG/M
3300009656	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_B C12 SIP DNA	Engineered	Open in IMG/M
3300009663	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG	Engineered	Open in IMG/M
3300009666	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG	Engineered	Open in IMG/M
3300009668	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG	Engineered	Open in IMG/M
3300009669	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG	Engineered	Open in IMG/M
3300009670	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC078_MetaG	Engineered	Open in IMG/M
3300009673	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG	Engineered	Open in IMG/M
3300009674	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG	Engineered	Open in IMG/M
3300009675	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC057_MetaG	Engineered	Open in IMG/M
3300009676	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaG	Engineered	Open in IMG/M
3300009688	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG	Engineered	Open in IMG/M
3300009693	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC097_MetaG	Engineered	Open in IMG/M
3300009696	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaG	Engineered	Open in IMG/M
3300009707	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG	Engineered	Open in IMG/M
3300009708	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU001_MetaG	Engineered	Open in IMG/M
3300009770	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A C12 SIP DNA	Engineered	Open in IMG/M
3300009781	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC12_MetaG	Engineered	Open in IMG/M
3300010311	AD_JPTRca	Engineered	Open in IMG/M
3300010340	AD_USOAca	Engineered	Open in IMG/M
3300010346	AD_USMOca	Engineered	Open in IMG/M
3300010351	AD_USPNca	Engineered	Open in IMG/M
3300010357	AD_USSTca	Engineered	Open in IMG/M
3300010365	AD_USDIca	Engineered	Open in IMG/M
3300012881	Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Gel_02_SludgeMetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300014203	Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Pumphouse #3_1 metaG	Environmental	Open in IMG/M
3300014204	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 64-88 metaG	Engineered	Open in IMG/M
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered	Open in IMG/M
3300019203	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNTR2_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300020072	Anaerobic biogas reactor microbial communites from Seattle, Washington, USA - Biogas_R2-B RNA time zero (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300025408	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU001_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025618	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC071_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025638	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025657	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC075_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025683	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025724	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA7_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025740	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNNA6_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025762	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC083_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025855	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG (SPAdes)	Engineered	Open in IMG/M
3300026252	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA (SPAdes)	Engineered	Open in IMG/M
3300026290	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1 time_0 SIP DNA (SPAdes)	Engineered	Open in IMG/M
3300028564 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant18	Engineered	Open in IMG/M
3300028567 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant14	Engineered	Open in IMG/M
3300028570 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant12	Engineered	Open in IMG/M
3300028602	Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3	Environmental	Open in IMG/M
3300028603	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R	Engineered	Open in IMG/M
3300028633	Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_UR_Gly	Engineered	Open in IMG/M
3300028677 (restricted)	Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant22	Engineered	Open in IMG/M
3300028851	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Lys2 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300029667	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Trp1 (Metagenome Metatranscriptome)	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Meso_10641313	2209111018	Solid Waste From Bioreactor	PVAAHLLPADEPILLFQVESWLSMMDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Meso_2546651	2209111018	Solid Waste From Bioreactor	PKEWERTTQKICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Draft_100212001	3300001567	Hydrocarbon Resource Environments	TKRALAAAAHLLPADEPILLFQVDTWLSMQDDGGSWWEVPGYLSLMGIALPDVIKASERAKKRVLREVCKL*
Draft_1002839410	3300001592	Hydrocarbon Resource Environments	MPRETKQALIAVAHILPDDEPLLLFQIETWLSMQDGGGSWWEVPAYLSLAAISLPDVVKAAERAKKRVLRVVCRI*
Draft_102546651	3300001975	Biogas Fermenter	SGPKEWERTTQKICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Draft_102629801	3300001975	Biogas Fermenter	QSNGYPWRQKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Draft_103360761	3300001975	Biogas Fermenter	VETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLSAVVKAS
Draft_105068041	3300001975	Biogas Fermenter	MKDGEVGFAIDTLPRGNRPKKWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLSAVVKAS
Draft_110641312	3300001975	Biogas Fermenter	PVAAHLLPADEPILLFQVESWLSMMDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24708J26588_101536592	3300002164	Biogas Fermentantion	KICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24714J26587_100993821	3300002167	Biogas Fermentantion	AVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24712J26585_100871383	3300002168	Biogas Fermentantion	ILPGEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRILKVVTAI
JGI24711J26586_100751641	3300002170	Biogas Fermentantion	AKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQKICKILKDEVERMPRETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRVLRVVTRI*
JGI24711J26586_100848602	3300002170	Biogas Fermentantion	MRRKXSVVYEXGEVGFAIDTLPRDNRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24709J26583_100763081	3300002173	Biogas Fermentantion	ETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24709J26583_101497423	3300002173	Biogas Fermentantion	TKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24710J26742_101255931	3300002174	Biogas Fermentantion	KRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24501J29690_10880781	3300002391	Biogas Fermentantion	HILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24503J29689_100423761	3300002392	Biogas Fermentantion	PILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
JGI24503J29689_101347911	3300002392	Biogas Fermentantion	FAIDTLPRDGRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRVLRVVTRI*
draft_100812466	3300002898	Biogas Fermenter	PGEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRVLRVVTRI*
LSCM3L_10599311	3300003667	Coalbed Water	VERMPRETKRALAVAAHLLPADEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0078910_1025262	3300005835	Biogas Reactor	MRTGEVGFAIDTLPRDGRPXEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLXLXAISXPXVVXASEXAKKRILKVVTAI*
Ga0078910_1047973	3300005835	Biogas Reactor	DGAAFAVDTLNRDGRPDEWEKITQRICRILKSEVERMPAETKQALAVTAHILPGEEIPLFQIETHLSMMDDGGSWWEVPAYLSPMAIALPDVVKASERAKKRILKEVTAI*
Ga0078910_1143381	3300005835	Biogas Reactor	ERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0078910_1211673	3300005835	Biogas Reactor	LPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0078910_1334621	3300005835	Biogas Reactor	MPAETKQALAVTAHILPGEEIPLFQIETHLSMMDDGGSWWEVPAYLSPMAIALPDVVKASERAKKRILKEVTAI*
Ga0082206_1020853	3300006225	Mixed Substrate Biogas Reactor	VETKRLLATFAXXXPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0082206_1021583	3300006225	Mixed Substrate Biogas Reactor	LQLIPSPRDNRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGXWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0082206_1283892	3300006225	Mixed Substrate Biogas Reactor	VVRDKTGAAFAIDTLPRDGRPAEWEKTTQRICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0082206_1338872	3300006225	Mixed Substrate Biogas Reactor	VRVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRILKVVTAI*
Ga0079064_10014911	3300006389	Anaerobic Digestor Sludge	LPDDEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAIALPDVVKASERAKKRILRVVCRI
Ga0079067_10582401	3300006398	Anaerobic Digestor Sludge	AEWERTTQKIGRILKSEVERMPRETKQALIAAAHLLPDDEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAIALPDVVKASERAKKRILRVVCRI*
Ga0079088_11730683	3300006588	Anaerobic Digestor Sludge	EKTTQRICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0079076_10092674	3300006592	Anaerobic Digestor Sludge	VSVVREAGTTGFAIDTLPRDGRPKEWEKTTQRICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0079098_10114011	3300006598	Anaerobic Digestor Sludge	EPILLFQVETWLSMKDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRILKVVTAI*
Ga0118671_10339311	3300009121	Anaerobic Wastewater Sludge	AAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLSDVVKASERAKKRILKVVTAI*
Ga0118671_11723301	3300009121	Anaerobic Wastewater Sludge	AAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0118671_11807081	3300009121	Anaerobic Wastewater Sludge	ILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRVLRVVTRI*
Ga0118672_10758291	3300009360	Anaerobic Wastewater Sludge	LYWLVLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0118673_10803971	3300009362	Anaerobic Wastewater Sludge	EVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMEDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRVLRVVTRI*
Ga0123327_12969362	3300009607	Anaerobic Biogas Reactor	PGEPILLFQVETWLSMKDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRVLRVVTRI*
Ga0123326_11077562	3300009647	Anaerobic Biogas Reactor	LLLFQIETWLSMQDDGGSWWEVPAYLSLMGISLPEVVKASERAKKRILRVVCRI*
Ga0123326_11982161	3300009647	Anaerobic Biogas Reactor	RICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMEDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRVLRVVTRI*
Ga0123329_11559021	3300009656	Anaerobic Biogas Reactor	ICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMEDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRVLRVVTRI*
Ga0116181_10772021	3300009663	Anaerobic Digestor Sludge	VAHILPADEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRVLRVVTRI*
Ga0116182_11427981	3300009666	Anaerobic Digestor Sludge	KGEVDRLPAETKRALAAVAHILPAGEPILLFQVESWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116182_12034861	3300009666	Anaerobic Digestor Sludge	WERTTQKIGRILKSEVERMPRETKRALAALAHLLPDDEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRILKVVTAI*
Ga0116180_10736771	3300009668	Anaerobic Digestor Sludge	KRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRVLRVVTRI*
Ga0116148_11270986	3300009669	Anaerobic Digestor Sludge	AGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVRASEQAKKRILRVVTRL*
Ga0116148_11834531	3300009669	Anaerobic Digestor Sludge	PRDGRSAEWEQTTQTICRIVKREVDRLPPRTKTLLAALAHIVPGEPILLFRVETWLSMQDNGGSWWEVPAYLSLAAISLPDVVKASERAQKTVQKLVCSL*
Ga0116183_11314281	3300009670	Anaerobic Digestor Sludge	RLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116185_12833041	3300009673	Anaerobic Digestor Sludge	TLPRDGRPKEWERTTQKICKILKDEVERMPRETKRALAVAAHLLPADEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116173_12320141	3300009674	Anaerobic Digestor Sludge	TTGFAIDTLPAAGRPAEWERTTQKIGRILKSEVERMPRETKRALAALAHLLPDDEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAISLPAVVKAAERAKKRVLRVVCRI*
Ga0116149_11374956	3300009675	Anaerobic Digestor Sludge	AGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVRASERAKKRILRVVTRL*
Ga0116187_12796052	3300009676	Anaerobic Digestor Sludge	VYEDGEVGFAIDTLPRDNRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116176_103932161	3300009688	Anaerobic Digestor Sludge	LLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116141_106458442	3300009693	Anaerobic Digestor Sludge	RMPRETKQALIVVAHLLPDDEPLLLFQIETWLSMQDDGGSWWEVPAYLSLMGISLPEVVKASERAKKRILKVVTAI*
Ga0116177_102105451	3300009696	Anaerobic Digestor Sludge	AGTTGFAIDTLPAAGRPAEWERTTQKIGRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116195_10998492	3300009707	Anaerobic Digestor Sludge	VERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116195_11028402	3300009707	Anaerobic Digestor Sludge	LAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116194_10551271	3300009708	Anaerobic Digestor Sludge	EWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116194_10969762	3300009708	Anaerobic Digestor Sludge	ETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLVAISLSDVVKASERAKKRVLRVVTRI*
Ga0116194_11085741	3300009708	Anaerobic Digestor Sludge	EPILLFQVETWLSMQDDGGSWWEIVAYLSLAAISLPDVVTASERAKKRIFPVVCRI*
Ga0123332_14049461	3300009770	Anaerobic Biogas Reactor	WERTTQKICKILKDEVERMPRETKRALAVAAHLLPADEPILLFQVESWLSMQDDGRSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116178_106585411	3300009781	Anaerobic Digestor Sludge	HLLPDDEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAIALPDVVKASERAQKTVQKLVCSL*
Ga0116254_10994301	3300010311	Anaerobic Digestor Sludge	FQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116250_104696802	3300010340	Anaerobic Digestor Sludge	RDGRSAEWEQTTQTICRIVKREVDRLPPRTKTLLAALAHIVPGEPILLFRVETWLSMQDNGGSWWEVPAYLSLAAISLPDVVKASERAQKTVQKLVCSL*
Ga0116239_102340561	3300010346	Anaerobic Digestor Sludge	LPRDGRSAEWEQTTQTICRIVKREVDRLPPRTKTLLAALAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVRASEQAKKRILRVVTRL*
Ga0116248_103542841	3300010351	Anaerobic Digestor Sludge	SVLPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116249_104894281	3300010357	Anaerobic Digestor Sludge	VDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0116249_116483692	3300010357	Anaerobic Digestor Sludge	RIVKREVDRLPPRTKTLLAALAHIVPGEPILLFRVETWLSMQDNGGSWWEVPAYLSLAAISLPDVVKASERAQKTVQKLVCSL*
Ga0116251_102152111	3300010365	Anaerobic Digestor Sludge	TLPAAGRPAEWERTTQKIGRILKSEVERMPRETKRALAALAHLLPDDEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAISLPAVVKAAERAKKRVLRVVCRI*
Ga0079063_10139352	3300012881	Anaerobic Digestor Sludge	VETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRILKVVTAI*
Ga0172378_112326602	3300014203	Groundwater	VDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMMDDGGSWWEVPAYLSPMAIALPDVVKASERAKKRVLKEVCKL*
Ga0172381_111753971	3300014204	Landfill Leachate	KILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI*
Ga0172380_103822091	3300014205	Landfill Leachate	TKRALAAAAHLLPDDEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAIALPDVAKASERAKKRVLRVVTRI*
Ga0179955_10656962	3300019203	Anaerobic Digestor Sludge	KILKDEVERMPRETKRALAVAAHLLPADEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0180031_10413832	3300020072	Anaerobic Biogas Reactor	LPVETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0208462_10559911	3300025408	Anaerobic Digestor Sludge	REVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLVAISLSDVVKASERAKKRVLRVVTRI
Ga0208693_10659841	3300025618	Anaerobic Digestor Sludge	LAALAHIVPGEPILLFRVETWLSMQDNGGSWWEVPAYLSLAAISLPDVVKASERAQKTVQKLVCSL
Ga0208198_10371073	3300025638	Anaerobic Digestor Sludge	RLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAFLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0208823_10611765	3300025657	Anaerobic Digestor Sludge	VAHILPADEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRVLRVVTRI
Ga0208564_10638211	3300025683	Anaerobic Digestor Sludge	YILPGEPILLFQVETWLSMKDDGGSWWEVPAYLPLVAISIPDVVKASERAKKRVLRVVTR
Ga0208564_11746211	3300025683	Anaerobic Digestor Sludge	RPKEWERTTQKICRILKGEVDRLPAETKRALAAVAHILPADEPLLLFQIETWLSMKDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRVLRVVTRI
Ga0208564_11856331	3300025683	Anaerobic Digestor Sludge	LPPRTKTLLAALAHIVPGEPILLFRVETWLSMQDNGGSWWEVPAYLSLAAISLPDVVKASERAQKTVQKLVCSL
Ga0208196_11944721	3300025724	Anaerobic Digestor Sludge	THQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAFLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0208940_12641632	3300025740	Anaerobic Digestor Sludge	VYEDGEVGFAIDTLPRDNRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0208040_11019761	3300025762	Anaerobic Digestor Sludge	AAAHLLPDDEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAISLPAVVKAAERAKKRVLRVVCRI
Ga0209717_11012144	3300025855	Anaerobic Digestor Sludge	FQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0209722_11381872	3300026252	Anaerobic Biogas Reactor	TKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAFLSLAGISLPDVVKASERAKKRVLRVVTRI
Ga0209510_12542472	3300026290	Anaerobic Biogas Reactor	VDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
(restricted) Ga0255344_10621371	3300028564	Wastewater	VVREAGTTGFAIDTLPRDGRPKEWERTTQKICKILKDEVERMPRETKRALAVAAHLLPDDEPLLLFQIETWLSMQDDGGSWWEVPAYLSLMGISLPEVVKASERAKKRILKVVTAI
(restricted) Ga0255342_11203204	3300028567	Wastewater	DTLPVAGRPAEWEKTTQRICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
(restricted) Ga0255341_10368163	3300028570	Wastewater	SVVRDKTGAAFAIDTLPRDGRPKEWERTTQKIGRILKSEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMQDDGGSWWEVPAYLSLAAIALPDVVKASERAKKRVLQVVTRI
Ga0265294_101732975	3300028602	Groundwater	AKTKRALAAAAHILPANEPILLFQVESWLSMQDDGGSWWEVPAYLSFPAMALPDVIKASERAKKRVLREVCKL
Ga0265293_103718163	3300028603	Landfill Leachate	RICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Ga0302236_10669971	3300028633	Activated Sludge	RDKTGAAFAIDTLPRDGRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
(restricted) Ga0255346_11549113	3300028677	Wastewater	TKQALIVVAHLLPDDEPLLLFQIETWLSMQDDGGSWWEVPAYLSLMGISLPEVVKASERAKKRILKVVTAI
Ga0307347_1377092	3300028851	Anaerobic Digestor Sludge	KSEVERMPRETKQALIVVAHLLPDDEPLLLFQIETWLSMQDDGGSWWEVPAYLSLMGISLPEVVKASERAKKRILKVVTAI
Ga0307354_1356521	3300029667	Anaerobic Digestor Sludge	RLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103500

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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