Metagenome Family F103581

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103581
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	85 residues
Representative Sequence	MRTLTSMVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Number of Associated Samples	75
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.59 %
% of genes near scaffold ends (potentially truncated)	23.76 %
% of genes from short scaffolds (< 2000 bps)	64.36 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.356 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (40.594 % of family members)
Environment Ontology (ENVO)	Unclassified (37.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.594 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.51% β-sheet: 22.22% Coil/Unstructured: 57.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13408	Zn_ribbon_recom	12.87
PF00239	Resolvase	11.88
PF07508	Recombinase	3.96
PF00589	Phage_integrase	1.98
PF13191	AAA_16	0.99
PF08238	Sel1	0.99
PF02368	Big_2	0.99
PF00990	GGDEF	0.99
PF12867	DinB_2	0.99
PF00437	T2SSE	0.99
PF16576	HlyD_D23	0.99
PF13361	UvrD_C	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	15.84
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	11.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.36 %
Unclassified	root	N/A	35.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.36 %
Unclassified	root	N/A	35.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.36 %
Unclassified	root	N/A	35.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	20.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	17.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.95 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.97 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.95 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.98 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.95 %
Chloroflexi bacterium RBG_16_52_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_52_11	3.96 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.95 %
Chloroflexi bacterium RBG_16_52_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_52_11	3.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10000312	All Organisms → cellular organisms → Bacteria → Acidobacteria	15823	Open in IMG/M
3300001867\|JGI12627J18819_10240115	All Organisms → cellular organisms → Bacteria → Terrabacteria group	729	Open in IMG/M
3300002907\|JGI25613J43889_10152720	Not Available	600	Open in IMG/M
3300002914\|JGI25617J43924_10000277	All Organisms → cellular organisms → Bacteria	10200	Open in IMG/M
3300005712\|Ga0070764_10205331	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1106	Open in IMG/M
3300005712\|Ga0070764_10889939	Not Available	557	Open in IMG/M
3300006176\|Ga0070765_101841035	Not Available	567	Open in IMG/M
3300006176\|Ga0070765_102276872	Not Available	505	Open in IMG/M
3300006893\|Ga0073928_10169662	All Organisms → cellular organisms → Bacteria → Acidobacteria	1740	Open in IMG/M
3300007258\|Ga0099793_10575848	Not Available	563	Open in IMG/M
3300007788\|Ga0099795_10599031	Not Available	524	Open in IMG/M
3300007788\|Ga0099795_10618501	Not Available	517	Open in IMG/M
3300009143\|Ga0099792_10027324	All Organisms → cellular organisms → Bacteria	2610	Open in IMG/M
3300009143\|Ga0099792_10244245	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300009143\|Ga0099792_10832357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300009518\|Ga0116128_1021604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2185	Open in IMG/M
3300010159\|Ga0099796_10022014	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1972	Open in IMG/M
3300010339\|Ga0074046_10143518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1526	Open in IMG/M
3300010376\|Ga0126381_100011126	All Organisms → cellular organisms → Bacteria	10162	Open in IMG/M
3300012202\|Ga0137363_10238524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1474	Open in IMG/M
3300012203\|Ga0137399_10005180	All Organisms → cellular organisms → Bacteria	7117	Open in IMG/M
3300012203\|Ga0137399_10102527	All Organisms → cellular organisms → Bacteria	2216	Open in IMG/M
3300012205\|Ga0137362_10000089	All Organisms → cellular organisms → Bacteria	36362	Open in IMG/M
3300012361\|Ga0137360_10405996	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1149	Open in IMG/M
3300012361\|Ga0137360_11638175	Not Available	549	Open in IMG/M
3300012582\|Ga0137358_10083632	All Organisms → cellular organisms → Bacteria	2150	Open in IMG/M
3300012582\|Ga0137358_10357060	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300012683\|Ga0137398_10945096	Not Available	599	Open in IMG/M
3300012685\|Ga0137397_10096626	All Organisms → cellular organisms → Bacteria	2161	Open in IMG/M
3300012685\|Ga0137397_10851881	All Organisms → cellular organisms → Bacteria → Terrabacteria group	676	Open in IMG/M
3300012917\|Ga0137395_11135237	Not Available	551	Open in IMG/M
3300012918\|Ga0137396_10068728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_52_11	2471	Open in IMG/M
3300012922\|Ga0137394_10670780	Not Available	874	Open in IMG/M
3300012922\|Ga0137394_10671164	Not Available	874	Open in IMG/M
3300012923\|Ga0137359_10104737	All Organisms → cellular organisms → Bacteria → Acidobacteria	2500	Open in IMG/M
3300012925\|Ga0137419_10042969	All Organisms → cellular organisms → Bacteria	2864	Open in IMG/M
3300012925\|Ga0137419_10080131	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300012927\|Ga0137416_10088137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_52_11	2302	Open in IMG/M
3300014162\|Ga0181538_10297166	All Organisms → cellular organisms → Bacteria → Terrabacteria group	878	Open in IMG/M
3300014200\|Ga0181526_10046553	All Organisms → cellular organisms → Bacteria → Acidobacteria	2775	Open in IMG/M
3300014501\|Ga0182024_10046191	All Organisms → cellular organisms → Bacteria	7009	Open in IMG/M
3300015264\|Ga0137403_11102956	Not Available	640	Open in IMG/M
3300017822\|Ga0187802_10086223	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1174	Open in IMG/M
3300017823\|Ga0187818_10267598	Not Available	748	Open in IMG/M
3300017823\|Ga0187818_10291442	All Organisms → cellular organisms → Bacteria → Terrabacteria group	716	Open in IMG/M
3300017929\|Ga0187849_1002859	All Organisms → cellular organisms → Bacteria	15940	Open in IMG/M
3300017933\|Ga0187801_10340763	Not Available	615	Open in IMG/M
3300017934\|Ga0187803_10324421	Not Available	617	Open in IMG/M
3300017943\|Ga0187819_10257678	Not Available	1020	Open in IMG/M
3300017948\|Ga0187847_10046512	All Organisms → cellular organisms → Bacteria → Acidobacteria	2499	Open in IMG/M
3300017955\|Ga0187817_10050884	All Organisms → cellular organisms → Bacteria → Acidobacteria	2554	Open in IMG/M
3300017955\|Ga0187817_10134212	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300017995\|Ga0187816_10127094	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1099	Open in IMG/M
3300018012\|Ga0187810_10497056	Not Available	520	Open in IMG/M
3300018043\|Ga0187887_10095115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1797	Open in IMG/M
3300018047\|Ga0187859_10569422	Not Available	636	Open in IMG/M
3300020140\|Ga0179590_1118030	All Organisms → cellular organisms → Bacteria → Terrabacteria group	719	Open in IMG/M
3300020199\|Ga0179592_10024152	All Organisms → cellular organisms → Bacteria	2720	Open in IMG/M
3300020199\|Ga0179592_10144106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1090	Open in IMG/M
3300020199\|Ga0179592_10377621	Not Available	621	Open in IMG/M
3300020583\|Ga0210401_10006290	All Organisms → cellular organisms → Bacteria → Acidobacteria	12096	Open in IMG/M
3300020583\|Ga0210401_10094196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_52_11	2813	Open in IMG/M
3300020583\|Ga0210401_10526919	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1044	Open in IMG/M
3300020583\|Ga0210401_10872356	Not Available	759	Open in IMG/M
3300021086\|Ga0179596_10063655	All Organisms → cellular organisms → Bacteria → Acidobacteria	1576	Open in IMG/M
3300021088\|Ga0210404_10098840	All Organisms → cellular organisms → Bacteria → Acidobacteria	1468	Open in IMG/M
3300021168\|Ga0210406_10726413	Not Available	763	Open in IMG/M
3300021170\|Ga0210400_10023995	All Organisms → cellular organisms → Bacteria	4741	Open in IMG/M
3300021171\|Ga0210405_10081797	All Organisms → cellular organisms → Bacteria	2545	Open in IMG/M
3300021180\|Ga0210396_10117707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2399	Open in IMG/M
3300021180\|Ga0210396_11698366	Not Available	513	Open in IMG/M
3300021402\|Ga0210385_10762508	Not Available	742	Open in IMG/M
3300021402\|Ga0210385_11279511	Not Available	562	Open in IMG/M
3300021406\|Ga0210386_10121015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_52_11	2165	Open in IMG/M
3300021406\|Ga0210386_11111776	Not Available	671	Open in IMG/M
3300021560\|Ga0126371_10301793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1728	Open in IMG/M
3300024288\|Ga0179589_10230753	Not Available	818	Open in IMG/M
3300024288\|Ga0179589_10402662	All Organisms → cellular organisms → Bacteria → Terrabacteria group	627	Open in IMG/M
3300025469\|Ga0208687_1086680	Not Available	678	Open in IMG/M
3300026320\|Ga0209131_1040983	All Organisms → cellular organisms → Bacteria	2660	Open in IMG/M
3300026551\|Ga0209648_10001190	All Organisms → cellular organisms → Bacteria	20729	Open in IMG/M
3300026555\|Ga0179593_1084940	All Organisms → cellular organisms → Bacteria → Acidobacteria	1583	Open in IMG/M
3300026555\|Ga0179593_1113576	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4484	Open in IMG/M
3300026557\|Ga0179587_10044741	All Organisms → cellular organisms → Bacteria	2522	Open in IMG/M
3300026557\|Ga0179587_10704927	Not Available	665	Open in IMG/M
3300027037\|Ga0209005_1023140	All Organisms → cellular organisms → Bacteria → Terrabacteria group	740	Open in IMG/M
3300027879\|Ga0209169_10114618	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1397	Open in IMG/M
3300027895\|Ga0209624_10000007	All Organisms → cellular organisms → Bacteria	232565	Open in IMG/M
3300027903\|Ga0209488_10018936	All Organisms → cellular organisms → Bacteria	4996	Open in IMG/M
3300027903\|Ga0209488_10217732	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300028047\|Ga0209526_10292758	Not Available	1104	Open in IMG/M
3300028536\|Ga0137415_10014959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7697	Open in IMG/M
3300030007\|Ga0311338_11893324	Not Available	534	Open in IMG/M
3300031525\|Ga0302326_11298553	All Organisms → cellular organisms → Bacteria → Terrabacteria group	992	Open in IMG/M
3300031718\|Ga0307474_10573971	Not Available	888	Open in IMG/M
3300031754\|Ga0307475_10880904	Not Available	708	Open in IMG/M
3300032174\|Ga0307470_11208739	Not Available	614	Open in IMG/M
3300032892\|Ga0335081_11355000	Not Available	798	Open in IMG/M
3300033402\|Ga0326728_10017450	All Organisms → cellular organisms → Bacteria	14382	Open in IMG/M
3300033402\|Ga0326728_11106202	Not Available	536	Open in IMG/M
3300034091\|Ga0326724_0043651	All Organisms → cellular organisms → Bacteria → Acidobacteria	3356	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.19%
Aquatic	Environmental → Aquatic	18.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.24%
Freshwater	Environmental → Aquatic → Freshwater	17.82%
Peat	Environmental → Terrestrial → Peat	4.95%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.37%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	17.82%
Loam	Environmental → Terrestrial → Soil → Loam	9.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.97%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	9.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.98%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.99%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	40.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	9.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.95%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.98%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.99%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025469	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027037	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_100003124	3300001546	Forest Soil	MRTLASMVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQEFTNELMEKFRFSSSRTTPLVFVPFDKVEFIIAALKSLSLSEPAFGL*
JGI12627J18819_102401151	3300001867	Forest Soil	VLVRTLASMVGEVIIVRIPLLNAESMTLVKLHGIEAHGIWIESQDFTNGLMERFRFSISRTTPLVFVPFDKVDFIIASLDSLSLSERSFGL*
JGI25613J43889_101527201	3300002907	Grasslands Soil	ASQLMRSLQSMIGEVVIARIPLLDADGLMLVKLHAIEANGLWVESQDFTNQLMEEFHFVSSRTTPLVFVPFDKVDFIIAALDSLSLSEPGFGL*
JGI25617J43924_100002777	3300002914	Grasslands Soil	MRSLGSMIGEVIIVRIPLLDADGMMLVKLHGIEAHGIWIESQDFTNQLMENFHFSSSRTTPLVFVPFDKVDFIIAHLDSLSLSEPAFGL*
Ga0070764_102053313	3300005712	Soil	MVGEVIIVRIPLLDAEGMTLVKLHGIEAHGIWIESQDLTNELMAKFGCSSSRTTPIVFIPFAKLEFIIAALDSLSLSEPAFGL*
Ga0070764_108899392	3300005712	Soil	VRTLASMVGEVIIARIPLLDAEGMTLVKLHGIETHGIWIESQDFTNELMERFRFSSSRTTPLVFVPFDKVDFIIASLDSLSLSERSFGL*
Ga0070765_1018410351	3300006176	Soil	VLVRTLASMVGEVIIARIPLLDAESMTLVKLHGIEAQGIWIESQDFTNELMERFRFSSSRTTPLVFVPFDKVDFIIASLDSLSLSERSFGL*
Ga0070765_1022768722	3300006176	Soil	VRIPLLDAEGMTLVKLHGIEAHGIWIESQDLTNELMAKFGCSSSRTTPIVFIPFAKLEFIIAALDSLSLSEPAFGLW*
Ga0073928_101696622	3300006893	Iron-Sulfur Acid Spring	MRTLQNMIGEVIMARIPLLDSDGMMLLKLHGVEANGLWVESQDFTNELMQKFHCYSSRTTPLVFLPFDKVDFILASLDSLSLSEPAFGFYDE*
Ga0099793_105758481	3300007258	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALDSLSLSEPAFGL*
Ga0099795_105990312	3300007788	Vadose Zone Soil	MRSLANMVGEVIIVRIPLLDAEGMSLVKLHGIEAQGIWIESQDFTNLLMERFHFSSSRTTPLVFVPFDKVDFIIVALDSLSLSEPAFGL*
Ga0099795_106185011	3300007788	Vadose Zone Soil	SRLGAQQFMRTLASMVGEVVIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL*
Ga0099792_100273243	3300009143	Vadose Zone Soil	MVGEVIIVRIPLLDAEGMSLVKLHGIEAQGIWIESQDFTNLLMERFHFSSSRTTPLVFVPFDKVDFIIVALDSLSLSEPAFGL*
Ga0099792_102442452	3300009143	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHAVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDLLSLSEQAFGL*
Ga0099792_108323572	3300009143	Vadose Zone Soil	MRSLASMIGEVIIVRIPVFDADGMMLVKLHGIEAQGIWVESQDFTNELMEKFHFSSSRTTPLVFVPFAKLDFIIASVDSLSLSEPAFGL*
Ga0116128_10216043	3300009518	Peatland	MIGEVIIVRIPLLDADGMTLVKLHGIEAHGIGVESQDFTNQLMENFHFSSSRTAPLLFVPFDKVDFIIASPDLLSLSEPALGL*
Ga0099796_100220143	3300010159	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPSDKLDFIIAALGSLSLSEPAFGL*
Ga0074046_101435182	3300010339	Bog Forest Soil	MVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQEFTNQLMEKFQFSSSRTTPLVFVPFEKVDFIIAALDSLSLSEPAFGL*
Ga0126381_1000111268	3300010376	Tropical Forest Soil	MIGEIIVVRIPLLHTDGMILVKLHGIEAHGIWIESQNLTNQLMEKFHCSSSRTTPLVFVPFGKVDFIIGAIESLSLSEPAFGISD*
Ga0137363_102385242	3300012202	Vadose Zone Soil	MVGEVIIVPIPLLDPERMSLVKLHAVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDLLSLSEQAFGL*
Ga0137399_100051804	3300012203	Vadose Zone Soil	MRSLASMIGEVIIVRIPLFDADGMMLVKLHGIEAQGIWVESQDFTNELMEKFHFSSSRTTPLVFVPFAKLDFIIASVDSLSLSEPAFGL*
Ga0137399_101025273	3300012203	Vadose Zone Soil	MVGEVVIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALHSLSLSEPAFGL*
Ga0137362_1000008911	3300012205	Vadose Zone Soil	MIGEVIIVRIPLLDADGMMLVKLHGIEAHGIWIESQDFTNQLMEKFHFSSSRTTPLVFVPFDKVDFIIVCVDELSLSEPAFGLFD*
Ga0137360_104059962	3300012361	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQNFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALESLSLSEPAFGL*
Ga0137360_116381751	3300012361	Vadose Zone Soil	MVGDVIIARVPLLDADGMMLLKLHGVETNGIWVESQDFTNELMEKFRFSSSRTTPLVFLPFDKIDFIIASLDSLSLSERAFGI*
Ga0137358_100836322	3300012582	Vadose Zone Soil	MVGEVVIVRIPLLDPERMSLVKLHGVEAHGIWIESQNFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALESLSLSEPAFGL*
Ga0137358_103570602	3300012582	Vadose Zone Soil	MRSLASMIGEVIIVRIPVFDADGMMLVKLHGIEAQGIWVESQDFTNELMVKFHFSSSRTTPLVFVPFAKLDFITASVDSLSLSEPAFGL*
Ga0137398_109450962	3300012683	Vadose Zone Soil	RTLASMIGEVIVVRIPLLDADGMTLVKLHGVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL*
Ga0137397_100966262	3300012685	Vadose Zone Soil	MIGEVVVARIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALHSLSLSEPAFGL*
Ga0137397_108518812	3300012685	Vadose Zone Soil	MTGEVIIVQISLLEEGMTLVKLHGVEVQGIWIESQQFTNRLMERFRFSSSRTTPLIFVPFDKVDFIIAALD*
Ga0137395_111352371	3300012917	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHGIETHGIWIESQGFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALGSLSLSEPAFGL*
Ga0137396_100687283	3300012918	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHGVDAHGIWIESQDFTNELMEKFQFLSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL*
Ga0137394_106707801	3300012922	Vadose Zone Soil	IIVRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALDSLSLSEPAFGL*
Ga0137394_106711642	3300012922	Vadose Zone Soil	VVVARIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALHSLSLSEPAFGL*
Ga0137359_101047373	3300012923	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALGSLSLSEPAFGL*
Ga0137419_100429693	3300012925	Vadose Zone Soil	MVGEVVIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL*
Ga0137419_100801313	3300012925	Vadose Zone Soil	MRNLASMIGEVIIARIPLFKADAMILVKLHGVESQGIWLESQDFTNELMEKFKFFSSRTTPLVFVPFDKVDFIVASLDSLSLSESAFGLSDE*
Ga0137416_100881371	3300012927	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHAVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDLLSLS
Ga0181538_102971661	3300014162	Bog	MIGEVILVRIPLLDTDGMILVKLHGIEAQGIWIESQEFTNQLMEKFRFVSSLTTPLVFVPFDKVDFIIGSLDSRSEPAFGL*
Ga0181526_100465532	3300014200	Bog	MIGEVILMRIPLLDTDGMILVKLHGIEAQGIWVESQEFTNQLMEKFRFVSSLTTPLVFVPFDKVDFIIGSLDSRSEPAFGL*
Ga0182024_100461915	3300014501	Permafrost	MVREVIIVRIPLLDPERMSLAKLHGVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL*
Ga0137403_111029562	3300015264	Vadose Zone Soil	MVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDLLSLSEQAFGL*
Ga0187802_100862232	3300017822	Freshwater Sediment	MRTLASMVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQEFTNEMMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0187818_102675982	3300017823	Freshwater Sediment	MIGEVVIARIPLLDADGMMLVKLHAVEANGLWLESQDFTNELMEKFQFFSSRTTPLVFVPFDKVDFIIASLDSLSLSEPAFGL
Ga0187818_102914422	3300017823	Freshwater Sediment	MRSLQSMIGEVVIARIPLLDADGVMLVKLHAVEANGLWVESQDFTNQLMEKFHFFSSRTTPLVFVPFDKVYFISAALDSLSLSEPAFGL
Ga0187849_10028593	3300017929	Peatland	MIGEVIIVRIPLLDADGMTLVKLHGIEAHGIGVESQDFTNQLMENFHFSSSRTAPLLFVPFDKVDFIIASPDLLSLSEPALGL
Ga0187801_103407632	3300017933	Freshwater Sediment	MRSLQSMIGEVVIARIPLLDADGVMLVKLHAVEANGLWVESQEFTNELMEKFQFSSSRTTPLVFVPFDEVDFIIAALESLSLSEPAFGL
Ga0187803_103244212	3300017934	Freshwater Sediment	MRTLQSMVGEVIIARIPLLDAEDLMLVKLHAVEANGLWVESQDFTNELMEKFQFFSSRTTPLVFVPFDKVDFIIASLDSLSLSEPAFGL
Ga0187819_102576781	3300017943	Freshwater Sediment	SLQSMIGEVVIARIPLLDADGVMLVKLHAVEANGLWVESQDFTNQLMEKFHFFSSRTTPLVFVPFDKVYFISAALDSLSLSEPAFGL
Ga0187847_100465122	3300017948	Peatland	MRSLANMIGEVILVRIPLLDTDGMILVKLHGIEAQGIWIESQEFTNQLMEKFRFVSSLTTPLVFVPFDKVDFIIGSLDSRSEPAFGL
Ga0187817_100508841	3300017955	Freshwater Sediment	IPLLDPERMSLVKLHGVEAHGIWIESQEFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0187817_101342121	3300017955	Freshwater Sediment	SLQSMIGEVVIARIPLLDADGVMLVKLHAVEANGLWVESQEFTNELMEKFQFSSPRTTPLVFVPFDEVDFIIAALESLSLSEPAFGL
Ga0187816_101270942	3300017995	Freshwater Sediment	MRSLQSMIGEVVIARIPLLDADGVMLVKLHAVEANGLWVESQDFTNQLMGKFHFFSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0187810_104970562	3300018012	Freshwater Sediment	MRSLQSMIGEVVIARIPLLDADGVMLVKLHAVEANGLWVESQEFTNELMEKFQFSSPRTTPLVFVPFDEVDFIIAALESLSLSEPAFGL
Ga0187887_100951152	3300018043	Peatland	MRSRANMIGEVILVRIPLLDTDGMILVKLHGIEAQGIWIESQEFTNQLMEKFRFVSSLTTPLVFVPFDKVDFIIGSLDSRSEPAFGL
Ga0187859_105694221	3300018047	Peatland	MRSLANMIGEVILVRIPLLDTDGMILVKLHGIEAQGIWIESQEFTNQLMEKFRFVSSLTTPLVFVPFDKVDFIIGSLDSRSLSEPAFGL
Ga0179590_11180302	3300020140	Vadose Zone Soil	VRTLASMVGEVIIVRIPLLDPERMSLVKLHAVEANGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAA
Ga0179592_100241522	3300020199	Vadose Zone Soil	MRTLASMVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGF
Ga0179592_101441062	3300020199	Vadose Zone Soil	MRTLASMIGEVIIVRIPLLDADGMMLVKLHGIEAHGIWIESQDFTNQLMEKFHFSSSRTTPVVFLPLDKVDFIVAHLDSLSLSEPAFGL
Ga0179592_103776212	3300020199	Vadose Zone Soil	VRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALGSLSLSEPAFGL
Ga0210401_100062909	3300020583	Soil	MRSLASMIGEIIIVRIPLLDAERMILVKLHGIELHGIWIESQDFTNQLMEKFHFSSSRTTPIVFVPFVKVDFIVASLDSLSLSESSFGL
Ga0210401_100941963	3300020583	Soil	VLSLMRTLQSMIGEVIIARIPLLDADGMMLLKLHGVETNGIWVESQDFTNELMEKFRFFSSRTTPLVFLPFDKIDFIIASLDSLSLSERAFGI
Ga0210401_105269192	3300020583	Soil	MRTLASMVGEVIIVRIPLLDPERMSLVKLHGVETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0210401_108723562	3300020583	Soil	MRTLTSMVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0179596_100636552	3300021086	Vadose Zone Soil	VRTLASMVGEVIIVRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALDSLSLSEPAFGL
Ga0210404_100988401	3300021088	Soil	MRNLASMIGEVIIVRIPLLDTYGMILVKLHAIEAHGIWIESQDFTNDLMEKFKFFSSRTTPLVFVPFDKVDFIVASL
Ga0210406_107264132	3300021168	Soil	MRTLQSMIGEVIIARIPLLDADGMMLLKLHGVETNGIWVESQDFTNELMEKFHFFSSRTTPLVFLPFDKIDFIIASLDSLSLSERAFGI
Ga0210400_100239956	3300021170	Soil	MRNLASMIGEVIIVRIPLLDTYGMILVKLHAIEAHGIWIESQDFTNDLMEKFKFFSSRTTPLVFVPFDKVDFIVASLDSLSLSEPAFGISDE
Ga0210405_100817972	3300021171	Soil	MRTLASMVGEIIIVRIPLLDPEKMSLVKLHGIETHGIWIESQDVTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0210396_101177073	3300021180	Soil	MRISLFDDDGMLLVKLHAIEAHGIWIESQDFTNQLMEKLYFSTYRTTPIVFIPLDKVDFIMGALDSLSFSERTFVL
Ga0210396_116983661	3300021180	Soil	VLSLMRTLQSMIGEVIIARIPLLDADGMMLLKLHGVETNGIWVESQDFTNELMEKFRFFSSRTTPLVFLPFDKIDFIIASLDSLSLS
Ga0210385_107625082	3300021402	Soil	MVGEVIIARIPLLDPEGMTLVKLHGIETHGIWIESQDFTNELMERFRFSSSRTTPLVFVPFDKVDFIIASLDSLSLSERSFGL
Ga0210385_112795111	3300021402	Soil	VDRPGANRTLVRTLASMVGEVIIVRIPLLDAEGMTLVKLHGIEAHGIWIESQDLTNELMAKFGCSSSRTTPIVFIPFAKLEFIIAALDSLSLSEPAFGL
Ga0210386_101210151	3300021406	Soil	MRSLASMIGEIIIVRIPLLDAERMILVKLHGIELHGIWIESQDFTNQLMEKFHFSSSRTTPIVFVPFVKVDFIVASL
Ga0210386_111117761	3300021406	Soil	MVAEVIIVRISLFDDDGMLLVKLYAIEAHGIWIESQDFTNQLMEELYFSTYRTTPIVFIPLDKVDFIMGALDSLSFSERTFVL
Ga0126371_103017933	3300021560	Tropical Forest Soil	VRTLASMIGEVIVVRIPLLDADGMMLVKLHGIEAHGIWIESQNLTNQLMEKFHCSSSRTTPLVFVPFDKVDFIISGLDALSLSEPAFGISD
Ga0179589_102307531	3300024288	Vadose Zone Soil	IIVRIPLLDPERMSLVKLHAVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0179589_104026622	3300024288	Vadose Zone Soil	VRTLASMVGEVIIVRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALDSLSLSEPA
Ga0208687_10866801	3300025469	Peatland	VIIVRIPLLDADGMTLVKLHGIEAHGIGVESQDFTNQLMENFHFSSSRTAPLLFVPFDKVDFIIASPDLLSLSEPALGL
Ga0209131_10409833	3300026320	Grasslands Soil	MRSLQSMIGEVVIARIPLLDADGLMLVKLHAIEANGLWVESQDFTNQLMEEFHFVSSRTTPLVFVPFDKVDFIIAALDSLSLSEPGFGL
Ga0209648_1000119014	3300026551	Grasslands Soil	MRSLGSMIGEVIIVRIPLLDADGMMLVKLHGIEAHGIWIESQDFTNQLMENFHFSSSRTTPLVFVPFDKVDFIIAHLDSLSLSEPAFGL
Ga0179593_10849403	3300026555	Vadose Zone Soil	MRTLASMVGDVIIARVPLLDADGMMLLKLHGVETNGIWVESQDFTNELMEKFHFFSSRTTPLVFLPFDKIDFIIASLDSLSLSERAFGI
Ga0179593_11135764	3300026555	Vadose Zone Soil	MVGEVVIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMERFHFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0179587_100447412	3300026557	Vadose Zone Soil	VRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGF
Ga0179587_107049272	3300026557	Vadose Zone Soil	QQFMRTLASMVGEVVIVRIPLLDPERMSLVKLHGVEAHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDLLSLSEQAFGL
Ga0209005_10231402	3300027037	Forest Soil	MVGEVIIVRIPLLNAESMTLVKLHGIEAHGIWIESQDFTNGLMERFRFSISRTTPLVFVPFDKVDFIIASLDSLSLSERSFGL
Ga0209169_101146183	3300027879	Soil	VRTLASMVGEVIIARIPLLDAEGMTLVKLHGIETHGIWIESQDFTNELMERFRFSSSRTTPLVFVPFDKVDFIIASLDSLSLSERSFGL
Ga0209624_10000007127	3300027895	Forest Soil	MRTLASMVGEVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQEFTNELMEKFRFSSSRTTPLVFVPFDKVEFIIAALKSLSLSEPAFGL
Ga0209488_100189367	3300027903	Vadose Zone Soil	MVGEVIIVRIPLLDAEGMSLVKLHGIEAQGIWIESQDFTNLLMERFHFSSSRTTPLVFVPFDKVDFIIVALDSLSLSEPAFGL
Ga0209488_102177323	3300027903	Vadose Zone Soil	MRTLASMVGEVIIVRIPLLDPERMSLVKLHAVEAHGIWIESQDFTNELMEKFHFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0209526_102927583	3300028047	Forest Soil	MIGEVIMARIPLLDVDGMMLVKLHGVEANGLWIESQDFTNELMKKFHCFSSRTTPLIFIPFGKIDFVLGCLESLSLSESAFGLSEE
Ga0137415_100149591	3300028536	Vadose Zone Soil	TLESMVGEVIIVRIPLLDPERMSLVKLHGIETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKLDFIIAALDSLSLSEPAFGL
Ga0311338_118933242	3300030007	Palsa	MRSLANMIGEVIVVRIPLLDTDGMILVKLHGIEAQGIWVESQEFTNQLMEKFCFVSSRTTPLVFVPFDKVDFIIGSLDSLSLSESAFGL
Ga0302326_112985532	3300031525	Palsa	MRSLANMIGEVIVVRIPLLNTDGMILVKLHGIEAQGIWIESQEFTNQLMEKFRFVSSRTTPLVFVPFDKVDYIIG
Ga0307474_105739712	3300031718	Hardwood Forest Soil	VRIPLLDDERMSLVKLHGIETYGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSPSEPAFGL
Ga0307475_108809043	3300031754	Hardwood Forest Soil	KQLMRTLASMVGEVIIVRIPLLDPERMSLVKLHGVETHGIWIESQDFTNELMEKFQFSSSRTTPLVFVPFDKVDFIIAALDSLSLSEPAFGL
Ga0307470_112087391	3300032174	Hardwood Forest Soil	CPKGLGVLSLMRTLQSMIGEVIIARIPLLDADGMMLLKLHGVETNGIWVESQDFTNELMEKFRFFSSRTTPLVFLPFDKIDFIIASLDSLSLSERAFGI
Ga0335081_113550003	3300032892	Soil	MRTLASLVGKVIIVRIPLLDPERMSLVKLHGVEAHGIWIESQEFTNELMEKFRFSSSRTTPLVFVPFDKVDFIIAALESLSLSEPAFGL
Ga0326728_100174509	3300033402	Peat Soil	MRTLQSMIGEVVIARIPLLDADGMMLVKLHGVEANGLWLESQDFTNELMEKFQFFSSRTTPLVFVPFDKVDFIIASLDSLSLSEPAFGL
Ga0326728_111062022	3300033402	Peat Soil	MRTLQSMIGEVVIARIPLLDADGMMLVKLHAVEANGLWLESQDFTNELMEKFQFFSSRTTPLVFVPFDKVDFIIASLDSLSLSEPAFGL
Ga0326724_0043651_682_933	3300034091	Peat Soil	MIGEVVIARIPLLDADGMMLVKLHGVEANGLWLESQDFTNELMEKFQFFSSRTTPLVFVPFDKVDFIIASLDSLSLSEPAFGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103581

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences