Metagenome Family F103588

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103588
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	84 residues
Representative Sequence	MPATQPSKELRALCHEHHAEMRLNQSLLNSEDDAKYTLAYACTEPDCLVHYSIYRGYFILSQNGNTNELDMVPRVRCPHDG
Number of Associated Samples	60
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	89.11 %
% of genes from short scaffolds (< 2000 bps)	89.11 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.040 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (67.327 % of family members)
Environment Ontology (ENVO)	Unclassified (58.416 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.327 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 22.02% Coil/Unstructured: 77.98%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07238	PilZ	6.93
PF05995	CDO_I	1.98
PF01339	CheB_methylest	1.98
PF09095	AmyA-gluTrfs_C	1.98
PF13031	DUF3892	1.98
PF13744	HTH_37	1.98
PF13320	DUF4091	0.99
PF00313	CSD	0.99
PF01381	HTH_3	0.99
PF01207	Dus	0.99
PF00837	T4_deiodinase	0.99
PF01740	STAS	0.99
PF13490	zf-HC2	0.99
PF16576	HlyD_D23	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	3.96
COG5553	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	General function prediction only [R]	1.98
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.02 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.04 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	93.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	1.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	21.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	1.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	1.98 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	1.98 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	1.98 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002909\|JGI25388J43891_1064059	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300005167\|Ga0066672_10020758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3431	Open in IMG/M
3300005178\|Ga0066688_10405063	All Organisms → cellular organisms → Bacteria → Acidobacteria	884	Open in IMG/M
3300005555\|Ga0066692_10406949	All Organisms → cellular organisms → Bacteria → Acidobacteria	863	Open in IMG/M
3300005586\|Ga0066691_10841157	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300005610\|Ga0070763_10255414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300006176\|Ga0070765_101533864	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300006796\|Ga0066665_10403105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300006797\|Ga0066659_10328000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1178	Open in IMG/M
3300007258\|Ga0099793_10110617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1278	Open in IMG/M
3300007258\|Ga0099793_10115958	All Organisms → Viruses → Predicted Viral	1249	Open in IMG/M
3300007258\|Ga0099793_10177203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300007258\|Ga0099793_10472577	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300007265\|Ga0099794_10018263	All Organisms → cellular organisms → Bacteria	3142	Open in IMG/M
3300007265\|Ga0099794_10096588	All Organisms → cellular organisms → Bacteria → Acidobacteria	1471	Open in IMG/M
3300007265\|Ga0099794_10145700	All Organisms → cellular organisms → Bacteria → Acidobacteria	1201	Open in IMG/M
3300007265\|Ga0099794_10444928	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300009038\|Ga0099829_10576306	All Organisms → cellular organisms → Bacteria → Acidobacteria	935	Open in IMG/M
3300009038\|Ga0099829_11098778	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300011269\|Ga0137392_10392897	All Organisms → cellular organisms → Bacteria → Acidobacteria	1151	Open in IMG/M
3300011271\|Ga0137393_10162755	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1870	Open in IMG/M
3300012096\|Ga0137389_10190690	All Organisms → cellular organisms → Bacteria → Acidobacteria	1702	Open in IMG/M
3300012096\|Ga0137389_11543255	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300012189\|Ga0137388_10778148	All Organisms → cellular organisms → Bacteria → Acidobacteria	887	Open in IMG/M
3300012189\|Ga0137388_10876599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300012200\|Ga0137382_10247644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1234	Open in IMG/M
3300012202\|Ga0137363_10195254	All Organisms → cellular organisms → Bacteria → Acidobacteria	1620	Open in IMG/M
3300012202\|Ga0137363_10366003	All Organisms → cellular organisms → Bacteria → Acidobacteria	1196	Open in IMG/M
3300012203\|Ga0137399_10479557	All Organisms → cellular organisms → Bacteria → Acidobacteria	1042	Open in IMG/M
3300012203\|Ga0137399_10499339	All Organisms → cellular organisms → Bacteria → Acidobacteria	1020	Open in IMG/M
3300012203\|Ga0137399_10587736	All Organisms → cellular organisms → Bacteria → Acidobacteria	936	Open in IMG/M
3300012203\|Ga0137399_10610797	All Organisms → cellular organisms → Bacteria → Acidobacteria	917	Open in IMG/M
3300012203\|Ga0137399_11101906	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300012203\|Ga0137399_11289253	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300012205\|Ga0137362_10626329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	927	Open in IMG/M
3300012205\|Ga0137362_10921419	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300012205\|Ga0137362_10947750	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300012210\|Ga0137378_10311311	All Organisms → cellular organisms → Bacteria → Acidobacteria	1465	Open in IMG/M
3300012351\|Ga0137386_10096041	All Organisms → cellular organisms → Bacteria → Acidobacteria	2092	Open in IMG/M
3300012361\|Ga0137360_10351054	All Organisms → Viruses → Predicted Viral	1235	Open in IMG/M
3300012361\|Ga0137360_10748464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300012361\|Ga0137360_11132651	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300012361\|Ga0137360_11484914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300012361\|Ga0137360_11736257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300012582\|Ga0137358_10262444	All Organisms → cellular organisms → Bacteria → Acidobacteria	1174	Open in IMG/M
3300012683\|Ga0137398_10450125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300012918\|Ga0137396_10123734	All Organisms → cellular organisms → Bacteria → Acidobacteria	1866	Open in IMG/M
3300012918\|Ga0137396_10582074	All Organisms → cellular organisms → Bacteria → Acidobacteria	828	Open in IMG/M
3300012925\|Ga0137419_10895631	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M
3300012925\|Ga0137419_11052486	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300012925\|Ga0137419_11578413	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300012927\|Ga0137416_10209763	All Organisms → cellular organisms → Bacteria → Acidobacteria	1568	Open in IMG/M
3300012927\|Ga0137416_11760663	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300012929\|Ga0137404_10853420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300012929\|Ga0137404_10869490	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300012929\|Ga0137404_11127002	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300012929\|Ga0137404_11674829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300012930\|Ga0137407_11154980	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300012944\|Ga0137410_10878746	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300012944\|Ga0137410_12087278	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300015053\|Ga0137405_1008308	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300015053\|Ga0137405_1283236	All Organisms → cellular organisms → Bacteria → Acidobacteria	3289	Open in IMG/M
3300015054\|Ga0137420_1336330	All Organisms → cellular organisms → Bacteria → Acidobacteria	1704	Open in IMG/M
3300015241\|Ga0137418_10035144	All Organisms → cellular organisms → Bacteria	4629	Open in IMG/M
3300015241\|Ga0137418_10152753	All Organisms → cellular organisms → Bacteria → Acidobacteria	2033	Open in IMG/M
3300015264\|Ga0137403_10819830	All Organisms → cellular organisms → Bacteria → Acidobacteria	784	Open in IMG/M
3300020140\|Ga0179590_1011724	All Organisms → cellular organisms → Bacteria → Acidobacteria	1907	Open in IMG/M
3300020140\|Ga0179590_1148330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300020170\|Ga0179594_10239638	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300021168\|Ga0210406_10214079	All Organisms → cellular organisms → Bacteria → Acidobacteria	1594	Open in IMG/M
3300021170\|Ga0210400_10601696	All Organisms → cellular organisms → Bacteria → Acidobacteria	906	Open in IMG/M
3300021170\|Ga0210400_11568916	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300021171\|Ga0210405_10584264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300021180\|Ga0210396_10224065	All Organisms → cellular organisms → Bacteria → Acidobacteria	1676	Open in IMG/M
3300021180\|Ga0210396_10622683	All Organisms → cellular organisms → Bacteria → Acidobacteria	937	Open in IMG/M
3300021432\|Ga0210384_10410145	All Organisms → cellular organisms → Bacteria → Acidobacteria	1220	Open in IMG/M
3300021559\|Ga0210409_10396259	All Organisms → cellular organisms → Bacteria → Acidobacteria	1236	Open in IMG/M
3300021559\|Ga0210409_10475113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1112	Open in IMG/M
3300021559\|Ga0210409_10762125	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300021559\|Ga0210409_11286685	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300024330\|Ga0137417_1082715	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300026329\|Ga0209375_1107073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1247	Open in IMG/M
3300026343\|Ga0209159_1001483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17738	Open in IMG/M
3300026376\|Ga0257167_1069745	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300026537\|Ga0209157_1013549	All Organisms → cellular organisms → Bacteria → Acidobacteria	5335	Open in IMG/M
3300026548\|Ga0209161_10380945	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300026551\|Ga0209648_10347622	All Organisms → cellular organisms → Bacteria → Acidobacteria	1022	Open in IMG/M
3300026557\|Ga0179587_10850792	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300027064\|Ga0208724_1020704	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300027655\|Ga0209388_1043357	All Organisms → cellular organisms → Bacteria → Acidobacteria	1297	Open in IMG/M
3300027663\|Ga0208990_1154848	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300027882\|Ga0209590_10214742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1220	Open in IMG/M
3300027882\|Ga0209590_10578311	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300027903\|Ga0209488_10253001	All Organisms → cellular organisms → Bacteria → Acidobacteria	1321	Open in IMG/M
3300028536\|Ga0137415_10051821	All Organisms → cellular organisms → Bacteria	3977	Open in IMG/M
3300031122\|Ga0170822_16611076	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300031962\|Ga0307479_11172673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300031962\|Ga0307479_11885213	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300031962\|Ga0307479_12184445	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	96.04%
Loam	Environmental → Terrestrial → Soil → Loam	3.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	67.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.96%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	67.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25388J43891_10640591	3300002909	Grasslands Soil	MPATQPSKELRALCYEHHVKMRLNRSLVNSDGDATQTLAYACTEPDCLVHYNIYRGYFILSQDGNTNEL
Ga0066672_100207586	3300005167	Soil	MAGVQPCKELHPLCHEHHVNMRRTEIALMIEGEHTPTPAYACPVTDCLVHYSMSRGYFVLSQNGNTNELDTVPRVRCSHDGTPMYLAEID
Ga0066688_104050631	3300005178	Soil	MPATESSKEFRALCHEHHVEMRLSQRLLNGAGNPKETLAYACTEPDCLVNYNIVRGYFLLNEKGSTNELNMVPRVRC
Ga0066692_104069492	3300005555	Soil	MPATQPSKELRALCYEHHVKMRLNRSLVNSDGDATQTLAYACTEPDCLVHYNIYRGYFILSQDGNTNELDMVPRVRCLHDGTPHVSC*
Ga0066691_108411571	3300005586	Soil	MPATQPSKELRALCHEHHVKMRLNRSHVNSDGGATQTLAYACTEPDCLVQYNIYRGYFILSQDGNTNQLDMVPRVRCLHDG
Ga0070763_102554141	3300005610	Soil	MPATQPSKELRALCHEHHAEMRLNQSLLNSEDDAKYTLAYACTEPDCLVHYSIYRGYFILSQNGNTNELGMVPRVRCPHDGTPMYLAEIDLEKRDFR
Ga0070765_1015338641	3300006176	Soil	MPATQPSKELRALCHEHHAEMRLNQSLLNSEDDAKYTLAYACTEPDCLVHYSIYRGYFILSQNGNTNELDMVPRVRCPHDG
Ga0066665_104031052	3300006796	Soil	MPATQPSKELRAFCHEHHVEMRLNQNALNSKSGNPTQTLAYACTEPDCLVHYNTYRGYFILSQNGITNEPDTVPRVRCP
Ga0066659_103280002	3300006797	Soil	MAGVQPCKELHPLCHEHHVNMRRTEIALMIEGEPTPTPAYACPVTDCLVHYSMSRGYFVLSQNGNTNELDTVPRVRCSHDGTPMYLAEIDLEKSGLRLWRCPQCDGRRTNE*
Ga0099793_101106172	3300007258	Vadose Zone Soil	MPATQPSKELHALCHEHHVEMRLNQSLSNSEGYATQTLAYACTDPHCLVHYNISRGYFTLSQNGNTNEPDMVPTVRCL
Ga0099793_101159583	3300007258	Vadose Zone Soil	MPATRPSKELRAFCHEHHVEMRLNRNPLNSKGDPTRTPAYACTEPDCLVHYNAYRGYFILSQNGITNEPDTVPSVR
Ga0099793_101772031	3300007258	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNQNALNSKSDNPTQTLAYACTEPDCLVHYNIYRGYFILSQNGITNEPDTVPRVRCPHDGTPMYLAEIDLQKR
Ga0099793_104725771	3300007258	Vadose Zone Soil	MPATGPSKELRALCHEHHVEMRLNRSLVKSEDSGKQAISYACTKPDCLVRYNLFRGYFMLPRNGN
Ga0099794_100182631	3300007265	Vadose Zone Soil	MPATQPSTELRAFCHEHHVEMRLYQNPLNSEGGPTQTLAYACTEPDCLVHYNIYRGYFILSQNGITNELDTVPGVRCPHDGTPMYLAEIDLQKRGFRLW
Ga0099794_100965883	3300007265	Vadose Zone Soil	MPATQPSKELRVFCHERHVEIRLNQRILNSKGDAKHSLAYACTEADCLVHYNIPGGYFMLRQNGNTNELDMVPRVWCPNDGTPM*
Ga0099794_101457002	3300007265	Vadose Zone Soil	MPATGPSKELRALCHEHHVEMRLNQSLVKSEDNGKQVISYACTKPDCLVRYNLFRGYFILPRNGNTN
Ga0099794_104449282	3300007265	Vadose Zone Soil	MPATQPSKELRALCHEHHVKMRLNRSLVNSDGGATQTLAYACTEPDCLVHYNIYRGYFILSQ
Ga0099829_105763061	3300009038	Vadose Zone Soil	MLDIQPSKELRVFYHEHYAAMRFNQSLLNSEGGDLTQTLAYACTEPDCLVHYNIYRGYFILNQSGKTNELDMVPSV
Ga0099829_110987781	3300009038	Vadose Zone Soil	MPATQPSKELRVFCHERHVEMRLNQRILNSKGDAKHSLAYACTEADCLVRYNIPGRYFMLRQNGNTNELDMVPRV*
Ga0137392_103928972	3300011269	Vadose Zone Soil	MPATQPSKELRALCHEHHPEMRLNQSLLNSEGDPIQELAYACTQPDCLVHYNIYRGYFMLSQNGNTNELDMVPNVRCPHDGTPMYLAEVDPDKKGFRLWIC
Ga0137393_101627553	3300011271	Vadose Zone Soil	MPATGPSKELRALCHEHHVEMRLNQSLVKSEDNGKQVISYACTKPDCLVRYNLFRGYFMLPRNGNTNQMDMVPEVRCPHDGA
Ga0137389_101906902	3300012096	Vadose Zone Soil	MPATQPSKEFHALCHEHHAEMRLNQILSKSEGEDTQTIAYACPEPDCLVLYNSSRGYFMLSQIGNLDELDMVPRVRCPHDGMPMYLAQINTEKRGFRLWR
Ga0137389_115432551	3300012096	Vadose Zone Soil	MPATQPSKELRALCHEHHVEMRLNSSLLNNKDGTTQTLAYACTAPDCLVHYNIFCGYFMLSRNGNGNQMDMVPEVRCPHDGAPMYLAEIGQEKR
Ga0137388_107781481	3300012189	Vadose Zone Soil	MPATQPSKEFHALCHEHHAEMRLNQILSKSEGEDTQTIAYACPEPDCLVLYNSSRGYFML
Ga0137388_108765991	3300012189	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNQSPLNSEGDDPRQTLAFACTEPDCLVHYNIHRGYFILSQNGITNELDMVPRVRCPHDGTPMYLAEIDLQKRGFRLW
Ga0137382_102476441	3300012200	Vadose Zone Soil	MPAAQPSKELHALCHEHHVEMRLNQSFVNSDGDVTQVLAYACTKPDCLVHYNVFRGYFILTQNGNTNEMDMVPRVRCVHDGAPMYLAEIKPAKRGFRLWTCPQ
Ga0137363_101952543	3300012202	Vadose Zone Soil	MPATQPSKELRALCHEHHVKMRLNRSLVKSEGDATQTLAYACTEPDCLVQYNIYRGYFILSQDGNTNQLDMVPRVRCLHDGTPM
Ga0137363_103660031	3300012202	Vadose Zone Soil	MPATQPSKELRAFCYEHHVKMRLNQSLLNSEGDATRTLAYACTEPDCLVHYNTARGYFMLSQNGNTNEPDMVPRVRCPHDGTPMYLAEI
Ga0137399_104795572	3300012203	Vadose Zone Soil	MPATQPSKGLRAFCHEHHVEMRLNQSLLNSEGDPTQTLAYACTQPDCLVHYNIYRGYFILSQNGITNELDMVPRVRCPHDGTPMYLAEIDLEKRGFRLW
Ga0137399_104993391	3300012203	Vadose Zone Soil	MPATQPSKELRAFCHEHHVQMRLNQNALNSKSDNPAQTLAYTCTEPGCLVHYNTYRGYFILSQNGITNEPDTVPRVRCPHDGTPMYL
Ga0137399_105877362	3300012203	Vadose Zone Soil	MPATQPTKELRAFCHEHHVEMRLNKNALSNKRDNPTQTLAYACTEPDCLVHYNTYRGYFILSQNGITNEPDTVP
Ga0137399_106107971	3300012203	Vadose Zone Soil	MPAAQPSKELRALCHEHHGEMRLNQSLLNCEDDARHPLAYACTEPDCFVHYSIYRGYFILSKNGNTNELDMVPRV
Ga0137399_111019061	3300012203	Vadose Zone Soil	MPAAMPSKELRALCHEHHVEMQLNQSLVNSEDNGKQRLAYACTKPGCLVRYNMFRGYFMLPRNGNTNQTDMVPELRCPHDGAPMYLAKIDQEKRDFR
Ga0137399_112892531	3300012203	Vadose Zone Soil	MPATGPSKELHALCHEHHAVMQLNQSFINSEDNGKQALAYACTKPDCLVRYNVFRGYFMLSRNGNTNQMDTVPEVRCPHDGAPMYLGEI
Ga0137362_106263292	3300012205	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNQNALNSKGDNPTQTLAYACTEPDCFVHFNTYRGYFILSQNGITNEPDTVPRVRCPHDGTPMYLAEIDLRKR
Ga0137362_109214191	3300012205	Vadose Zone Soil	MTATQHSKELRAFCYEHHVEMRLAQNLSDTTDATTQALPYACTEPDCLVHYNIFRGYFVPGQKGNTNELDMVPNVRCLHDGTPMYLAELNPDKTSFRLWI
Ga0137362_109477501	3300012205	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNQNALNSKSDNPTQTLAYACTEPDCLVHYNIYRGYFILSQNGITNEPDTVPRVRCPHDGTPMY
Ga0137378_103113112	3300012210	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNQNALNSKSGNPTQTLAYACTEPDCLVHYNTYRGYFILSQN
Ga0137386_100960411	3300012351	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNQNALNSKSGNPTQTLAYACTEPDCLVHYNTYRGYFILSQNGITNEPDTVPRVRCPHDGTPMYLAQIDQEKRG
Ga0137360_103510541	3300012361	Vadose Zone Soil	MPATRPSKELRAFCHEHHVEMRLNRNPLNSKGDPTRTPAYACTEPDCLVHYNAYRGYFILSQNGIT
Ga0137360_107484642	3300012361	Vadose Zone Soil	MPATQPSKELRALCHEHHVEMKLTRSLLNSEGDSTKTLAYACTESDCFVHYSMSRGYFVLSQNGN
Ga0137360_111326512	3300012361	Vadose Zone Soil	MPAARPSKELRALCHEHHVEMRLNQSLVNSEDNGKPTLAYACTKPDCFVRYNMFRGYFMLPRNGNTNQLDMVPRVRCLHDGTPMYLAEINP
Ga0137360_114849142	3300012361	Vadose Zone Soil	MPATQPSKELRTLRALCHEHHVKMRLNQNPLNSEGHDPTQTLAYACTEPDCLVHYNTYRGYFILSQDGITNEPDTVPRVRCPHDGTPMYLAE
Ga0137360_117362571	3300012361	Vadose Zone Soil	MPATQPSKELRVFYHERHVEIRLNQRILNSKGDAKHSLAYACTEADCLVHYNILGGYFMLRQNGNTNELDMVPRVRCPNDGTPMY
Ga0137358_102624441	3300012582	Vadose Zone Soil	MPATQPSKELRVFCHERHVEMRLNQRILNSKGDAKHSLAYACTEPDCLVHYNIPGGYFMLRQNGNTNELDMVPRVRCPNDGT
Ga0137398_104501253	3300012683	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNRNPLNSKGDNPTQTLAYACTEPDCLVHYNTYRGYFILSQNGITNE
Ga0137396_101237342	3300012918	Vadose Zone Soil	MPATQPSKELRALCYEHHAEMRLNQSLLNSEGDPIQKLAYACTQPDCLVHYNIYRGYFMLSQNGNTNELDMVPRVRCSHDG
Ga0137396_105820741	3300012918	Vadose Zone Soil	MPATGPSKELRALCHEHHVEMRLNQSLVNSKDNGKQTLAYACTKPDCLVRYNMFRGYFMLPRNGNTNQTDMVPEVRCPHDGAPMY
Ga0137419_108956311	3300012925	Vadose Zone Soil	MPAAQPSKELRALCHEHHGEMRLNQSLLNCEDDARHPLAYACTEPDCFVHYSIYRGYFILSKNGNTNELDMVPRVRCPHDGTPMYLAEIDLEKRGFRLWRCPQ
Ga0137419_110524861	3300012925	Vadose Zone Soil	MPATQPSKELRAFCHEHHVKMRLNQSLLNSEGDPTQTLVYACTEPDCLVHYNIYRGYFILSQNGNTNELDMVP
Ga0137419_115784131	3300012925	Vadose Zone Soil	MPAAQPGKELRALCHEHRLEMRLNQSLVNSDGDVTQVLAYACTRPDCLVHYNIFRGYFILTQNGNTNETDMVPRVRCVHDGAPMYLAEINPAKRGFRLWTCP
Ga0137416_102097631	3300012927	Vadose Zone Soil	MPGTQPSKELRVLCYEHHVKMRLNRSLVNSDGDATRTLAYACTEPDCLVHYNIYRGYFLLSQDGNTN
Ga0137416_117606631	3300012927	Vadose Zone Soil	MPATGPSKELHALCHEHHAVMQLNQSFINSEDNGKQALAYACTKPDCLVRYNVFRGYFMLSRNGNTNQMDTLPEVRCPHDGAPMYLGEIDREKKDFRLWRCPQC
Ga0137404_108534201	3300012929	Vadose Zone Soil	MPATQPNKELRAFCYEHHVKMRLNQSVLNSEGGPTQTLAYACTEPDCLVHYNISRGYFVLSQNGNTNESEMVPRVRCPHDGTPMYLAEIDLQKRGFRLWICPQC
Ga0137404_108694901	3300012929	Vadose Zone Soil	MAATVPSKELRALCHEHHVEMRLNLSLVNCEDNGKQTLAYACTKPDCLVRYNMFRGYFVLPRNGNTSQTDMVPEVR
Ga0137404_111270022	3300012929	Vadose Zone Soil	MPGTQPSKELRALCHEHHVGMRLNQSHLNSEGGDLTQTLAYACTEPDCLVHYNIYRGYFILSQSGNTNELDMVPSVRCLHDGTPMYLAE
Ga0137404_116748292	3300012929	Vadose Zone Soil	MPATQPSKELRPLCHEHHVEMKLNQRLPSSEGNATQALTYACAESDCFVHYSMSRGYFVLSQNGNTNELDMVPRVRCSHDGTPMYLAEID
Ga0137407_111549801	3300012930	Vadose Zone Soil	MPAIQPSKELRAFCHEHHVKMRLNLSVLNSEGDPTQTLVCACTEPDCLVHYNIYRGYFILNQNGNTNELDMVPS
Ga0137410_108787461	3300012944	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNRNPLNTEGYDPTLSYACTAPDCLVHYNTYRGYFILSQNGITNEPDTVPRVRCPHDGTPMYLA
Ga0137410_120872781	3300012944	Vadose Zone Soil	MPATQPSKELRALCHEHHVEMRLSQSLSNSEGDAIQTLAYACTDPHCLVHYNISRGYFTLSKN
Ga0137405_10083081	3300015053	Vadose Zone Soil	MPATQPSKELRALCHEHHVKMRLNRSLVKSEGDATQTLAYACTEPDCLVQYNIYRGYFILSRQDGNTNQLDMVLRVRCLH
Ga0137405_12832361	3300015053	Vadose Zone Soil	MTATQHSKELRAFCYEHHVEMRLAQNLSDTTDATTQALPYACTEPDCLVHYNIFRGYFVPGQKGNTNELDMVPNVRCLHDGTPMYLAMGRPC
Ga0137420_13363303	3300015054	Vadose Zone Soil	MPATRPSKELRAFCHEHHVEMRLNRNPLNSKGDPTQTPAYACTEPDCLVHYNAYRGYFILSQNGITNEPDTVPSVRCPYDGTPMYLAEIDLRKGLFACGYARNAIGDARMRRAS*
Ga0137418_100351446	3300015241	Vadose Zone Soil	MPAAQPSKELRALCHEHHGEMRLNQSLLNCEDEAKHPLAYACTEPDCFVHYSIYRGYFILSKNGNTNELDMVPRVRCPHDGTPMYLAEID
Ga0137418_101527533	3300015241	Vadose Zone Soil	MPATQPSKGLRAFCHEHHVEMRLNQSLLNSEGDPTQTLAYACTQPDCLVHYNIYRGYFILSQNGITNELDMVPRVRCPHDGTPMYLAEID
Ga0137403_108198302	3300015264	Vadose Zone Soil	MPATVPSKELRALCHEHHVEMRLKQSLVNSEDNGKQALAYTCTKPGCLVRYNLFRGYFILPQNGN
Ga0179590_10117243	3300020140	Vadose Zone Soil	MPATQPGKELRALCHEHHVEMRLDQSLVNNAGKAKQTLTYACTERDCLVHYNVFRGYFILPQDGN
Ga0179590_11483301	3300020140	Vadose Zone Soil	MPAAQPSKELRALCHEHHGEMRLNQSLLNCEDEARHPLAYACTEPDCFVHYSIYRGYFILSKNGNTNELDMVPRVRCPHDGTPMYLAEIDLEKRGFRLWR
Ga0179594_102396382	3300020170	Vadose Zone Soil	MPGTQPSKELRALCHEHHVGMRLNQSHLNSEGGDLTQTLAYACTEPDCLVHYNIYRGYFILSQSGNT
Ga0179594_104114321	3300020170	Vadose Zone Soil	MSATQPSKELRVFCHEHHVKMRLDESLLNSEGDPTKTLAYACTEPDCLVHYNIYRGYFIL
Ga0210406_102140793	3300021168	Soil	MPATQPSKYLRPLCHEHHAEMRLNQSLLNSEDDTKHTLAYACTQPDCLVHYSIYRGYFIPSQSGNTNGLDMVPRVRCSHDVTPM
Ga0210400_106016962	3300021170	Soil	MPATQPTKELRALCHEHHAEMRLNRSLLNSEDDAKHTLAYACTEPDCLVHYSIYRGYFILSQNGNTNELDMPR
Ga0210400_115689161	3300021170	Soil	MPATQPSKKLRALCHEHHMEMRLNQSLLYSKGDVIRTLTYVCTEPDCFVRYNTSRGYFILSQNGNMEEDMVPRVRCPHDGTPMYLDEIGVEKRDFR
Ga0210405_105842642	3300021171	Soil	MPATQPSRELRAFCHEHHVEMRHHQSPLNRGGDAGWTGAYACTAPDCLVHYSISRGYFLLSQNGNGNEPDMVPEVRCPHDGTPMYLAEIDRE
Ga0210396_102240651	3300021180	Soil	MPATQPSKELRALCHEHHVEMRLNPSLLNTDGDAAETFAYACAEPGCLVHYNISCGYFLLSQNGSTN
Ga0210396_106226832	3300021180	Soil	MPGTQPSKELRALCHEHHVGMRLNQSFLNSEGDLKQALAYACTEHDCLVHYNIYRGYFILSQSENTNELDMVPSVRCPHDGAPMYLAEIDPDKSAFRLWIYRILE
Ga0210384_104101451	3300021432	Soil	MPATQPSKELRPLCHEDHAEMRLNQGLLNSEDDTKHTLAYACTQPDCLVHYSIYRGYFIPSQSGNTNGLDMVPRVRCPH
Ga0210409_103962591	3300021559	Soil	MLATQPSKGLRALCHEHHVEMRLNQSLLDSEKDSTQTLAYACTESDCLVRYNIFRGYFMLSRNGSGNHMDMVPEVRCPRDGAPM
Ga0210409_104751132	3300021559	Soil	MPATQPSKELRAICHEHHVKMRLNQSLLNSEGDPTQTLVYACTEPDCLVHYNIYRGYFILSQNGNTNELDMVPSVRCPHDGTPMYLAPIDQEKRGFRLWICP
Ga0210409_107621252	3300021559	Soil	MPGAQPSKELRALCHEHHAEMRLNQSFLNSESDLKQALAYACTERDCLVHYNIYRGYFILSQSENTNELDMVPSVRCPHDGAPMYLAEIDPDKSAFRLWIYRILE
Ga0210409_112866851	3300021559	Soil	MPATQPSKELRALCHEHHVEMRPNQSLLNRAGKAKQTLAYACTEPDCLVHYNTSRGYFILTQNGNMNQMDMVPRVRCPHDGTPMYLAEID
Ga0137417_10827151	3300024330	Vadose Zone Soil	MPATQPSKELRAFCHEHHVEMRLNQNALNSKSDNPTQTLAYACTEPDCLVHYNIYRGYFILSQNGITNEPDTVPRVRCPHDGTPMYL
Ga0209240_11130872	3300026304	Grasslands Soil	MPAAQPSKELRALCHEHHGEMRLNQSLLNCEDDAKHPLAYACTEPDCFVHYSIYRGYFIL
Ga0209375_11070731	3300026329	Soil	MPATQPSKELRALCYEHHVKMRLNRSLVNSDGDATQTLAYACTEPDCLVHYNIYRGYFILSQDGNTNELDMVPRVRCLHDGTP
Ga0209159_10014838	3300026343	Soil	MPATQPSKELRALCYEHHVKMRLNRSLVNSDGDATQTLAYACTEPDCLVHYNIYRGYFILSQDGNTNELDMVPRVRCLHDGTPHVSC
Ga0257167_10697451	3300026376	Soil	MPATQPSKELRVFCHERHVEMRLNQRILNSKGDAKHSLAYACTDADCLVHYNIPGGYFMLRQNGNTNELDMVPRVRC
Ga0209157_101354910	3300026537	Soil	MPATQPSKELRALCYEHHVKMRLNRSLVNSDGDATQTLAYACTEPDCLVHYNIYRGYFILSQDGNTN
Ga0209161_103809451	3300026548	Soil	MPATQPSKELRAFCHEHHVKMRLNQNALNSKSDNPTQTLAYACTEPDCLVHYNTYRGYFILSQNGITNEPDTVPRVRCPHDG
Ga0209648_103476221	3300026551	Grasslands Soil	MPATQPSKELRALCHEHHAEMRLNQSLLNSEGDPTQTLVYACTQPDCPVHYNIYRGYFILSQNGN
Ga0179587_108507921	3300026557	Vadose Zone Soil	MPATQPSRELRAFCHEHHVEMRHHQSPLSSGGDVGQTGAYACTVPDCLVHYSIARGYFISSHNGNGNEPDMVPEVRCPHDG
Ga0208724_10207041	3300027064	Forest Soil	MPATQPSKELRALCHEHHAEMRLNQSLLNSEDDAKYTLAYACTEPDCLVHYSIYRGYFILSQNGNTNELGMVPR
Ga0209388_10433571	3300027655	Vadose Zone Soil	MPAAQPSKELRALCHEHHVEMRLNQSFVNSDGDATQMLAYACTKPDCLVHYNIFRGYFILTQNGN
Ga0208990_11548481	3300027663	Forest Soil	MPAIQPSKELRAFCHEHHVEMRLNQKPLNSKGDPTQTLAYACTEPDCLVHYNTYRGYFILSQNGITNELDVVP
Ga0209590_102147423	3300027882	Vadose Zone Soil	MPATQPRKELRAFCHEHHVKMRLNQSLLNSEGDPTQKLAYACTEPDCLVHYNIYRGYFIPGQNENTNELDTVPRVRCP
Ga0209590_105783111	3300027882	Vadose Zone Soil	MPATQPSKELRAFCHEHHVKMKLNQSLLNSEGDPTQKLAYACTEPNCLVHYNIYRGYFIPGQNENTNELDTVPRVRCPHDGTLMYL
Ga0209488_102530012	3300027903	Vadose Zone Soil	MPATQPSKELRALCHEHHAEMRLNQSLLNSEGDPIQKLAYACTQPDCLVHYNIYRGYFMLSQNGNTNELDMVPNVRCPHDGTPMYLAEVDPDKKG
Ga0137415_100518211	3300028536	Vadose Zone Soil	MPAAQPSKELRALCHEHHGEMRLNQSLLNCEDDAKHPLAYACTEPDCFVHYSIYRGYFILSKNGNTNELDMVPRVRCPHDGTPMYLAEIDLEKRGFRLWICPQ
Ga0170822_166110761	3300031122	Forest Soil	MPATQPSKELRPLCHEHHAEMRLNQSLLNSEDDAEHTLAYACTQPDCLVHYNIYRGYFILSQNGNTNELDMVP
Ga0307479_111726731	3300031962	Hardwood Forest Soil	MPATKPSRELRAFCHEHHVEMRHHQSPLNSGGDAGQTGTYSCTVPDCLVHYSIAHGYFISSHNGNGNEPDMVPEVRCPHDGTPMYLAEIDRGKRG
Ga0307479_118852131	3300031962	Hardwood Forest Soil	MPAIQPSKELRAFCHEHHMEMRLNQSLLNSRDATTQTLTYACTEPDCLVQYNISRGYFILSQNGNTNDLDMVPRVQCLQD
Ga0307479_121844451	3300031962	Hardwood Forest Soil	MPATKPSREFRAFCHEHHVEMRHHQSPLNSGGDAGQTGAYACTVPDCLVHYSIARGYFISSHNGNGNEQDMVPEVRCPNDGTPMYLAEIDREKRDFRLWRCPQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103588

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences