Metagenome / Metatranscriptome Family F103632

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103632
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	46 residues
Representative Sequence	MREERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLP
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	48.48 %
% of genes near scaffold ends (potentially truncated)	91.09 %
% of genes from short scaffolds (< 2000 bps)	94.06 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.465 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.743 % of family members)
Environment Ontology (ENVO)	Unclassified (32.673 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (38.614 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.92% β-sheet: 17.57% Coil/Unstructured: 63.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.304.1.1: TTHA1013-like	d1wv8a1	1wv8	0.73918
d.50.1.1: Double-stranded RNA-binding domain (dsRBD)	d2dixa1	2dix	0.7145
e.3.1.0: automated matches	d5zqaa_	5zqa	0.70182
c.51.4.1: ITPase (Ham1)	d1k7ka1	1k7k	0.69214
d.204.1.0: automated matches	d3tqma_	3tqm	0.69099

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04392	ABC_sub_bind	17.82
PF03401	TctC	1.98
PF00890	FAD_binding_2	1.98
PF00027	cNMP_binding	0.99
PF01266	DAO	0.99
PF00816	Histone_HNS	0.99
PF08495	FIST	0.99
PF09584	Phageshock_PspD	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	17.82
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.98
COG2916	DNA-binding protein H-NS	Transcription [K]	0.99
COG3287	FIST domain protein MJ1623, contains FIST_N and FIST_C domains	Signal transduction mechanisms [T]	0.99
COG4398	Small ligand-binding sensory domain FIST	Signal transduction mechanisms [T]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
All Organisms	root	All Organisms	46.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
cellular organisms	root	All Organisms → cellular organisms	46.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.71 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.96 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.96 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.96 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.97 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.99 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.47 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.96 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.97 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.99 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_110166535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1651	Open in IMG/M
3300005334\|Ga0068869_100402794	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300005365\|Ga0070688_101553013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300005366\|Ga0070659_100053995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3164	Open in IMG/M
3300005366\|Ga0070659_102116329	Not Available	506	Open in IMG/M
3300005559\|Ga0066700_10824527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300005564\|Ga0070664_102196346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300005719\|Ga0068861_100346378	Not Available	1302	Open in IMG/M
3300006175\|Ga0070712_101797414	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300007076\|Ga0075435_101143883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	681	Open in IMG/M
3300009137\|Ga0066709_100394860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1917	Open in IMG/M
3300009174\|Ga0105241_12598621	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300009553\|Ga0105249_10397525	Not Available	1408	Open in IMG/M
3300009553\|Ga0105249_10408514	Not Available	1389	Open in IMG/M
3300010397\|Ga0134124_10235755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1677	Open in IMG/M
3300010399\|Ga0134127_11853314	Not Available	680	Open in IMG/M
3300012203\|Ga0137399_11713918	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300012207\|Ga0137381_11506840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300012351\|Ga0137386_10888210	Not Available	639	Open in IMG/M
3300012355\|Ga0137369_10399075	Not Available	992	Open in IMG/M
3300012356\|Ga0137371_10466355	Not Available	976	Open in IMG/M
3300012469\|Ga0150984_103041530	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300012469\|Ga0150984_119656015	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300012469\|Ga0150984_119945218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2482	Open in IMG/M
3300012517\|Ga0157354_1059136	Not Available	572	Open in IMG/M
3300012685\|Ga0137397_10492965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	913	Open in IMG/M
3300012929\|Ga0137404_10661590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	943	Open in IMG/M
3300012988\|Ga0164306_11014627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300012989\|Ga0164305_10804122	Not Available	780	Open in IMG/M
3300013105\|Ga0157369_11986561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300013308\|Ga0157375_13271229	Not Available	540	Open in IMG/M
3300015374\|Ga0132255_102934079	Not Available	729	Open in IMG/M
3300016270\|Ga0182036_10650168	Not Available	849	Open in IMG/M
3300016319\|Ga0182033_10939714	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300016341\|Ga0182035_11649121	Not Available	579	Open in IMG/M
3300016341\|Ga0182035_12012161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300016371\|Ga0182034_10545353	Not Available	973	Open in IMG/M
3300016422\|Ga0182039_11674081	Not Available	582	Open in IMG/M
3300016445\|Ga0182038_10239174	Not Available	1453	Open in IMG/M
3300018027\|Ga0184605_10244278	Not Available	816	Open in IMG/M
3300018028\|Ga0184608_10153816	Not Available	992	Open in IMG/M
3300018051\|Ga0184620_10206367	Not Available	655	Open in IMG/M
3300018067\|Ga0184611_1051835	Not Available	1369	Open in IMG/M
3300018078\|Ga0184612_10354440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300018433\|Ga0066667_11059436	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300018469\|Ga0190270_10702344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1003	Open in IMG/M
3300018469\|Ga0190270_11575350	Not Available	708	Open in IMG/M
3300018469\|Ga0190270_11626041	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300018476\|Ga0190274_12454855	Not Available	618	Open in IMG/M
3300019882\|Ga0193713_1084117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	894	Open in IMG/M
3300019890\|Ga0193728_1125501	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300020004\|Ga0193755_1205783	Not Available	558	Open in IMG/M
3300020005\|Ga0193697_1152517	Not Available	511	Open in IMG/M
3300020016\|Ga0193696_1093234	Not Available	777	Open in IMG/M
3300025932\|Ga0207690_10639821	Not Available	871	Open in IMG/M
3300025932\|Ga0207690_10743530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808	Open in IMG/M
3300026067\|Ga0207678_10409604	Not Available	1175	Open in IMG/M
3300028704\|Ga0307321_1108238	Not Available	569	Open in IMG/M
3300028708\|Ga0307295_10143788	Not Available	660	Open in IMG/M
3300028711\|Ga0307293_10126229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	813	Open in IMG/M
3300028712\|Ga0307285_10125117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	692	Open in IMG/M
3300028712\|Ga0307285_10129508	Not Available	682	Open in IMG/M
3300028715\|Ga0307313_10004737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3198	Open in IMG/M
3300028715\|Ga0307313_10022497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1725	Open in IMG/M
3300028718\|Ga0307307_10176017	Not Available	673	Open in IMG/M
3300028720\|Ga0307317_10126582	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300028722\|Ga0307319_10041379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1438	Open in IMG/M
3300028771\|Ga0307320_10075924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1260	Open in IMG/M
3300028791\|Ga0307290_10222847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300028793\|Ga0307299_10077098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1238	Open in IMG/M
3300028884\|Ga0307308_10006222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	5170	Open in IMG/M
3300031091\|Ga0308201_10310652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	565	Open in IMG/M
3300031546\|Ga0318538_10480152	Not Available	673	Open in IMG/M
3300031720\|Ga0307469_11576058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300031744\|Ga0306918_11200937	Not Available	585	Open in IMG/M
3300031744\|Ga0306918_11493435	Not Available	516	Open in IMG/M
3300031763\|Ga0318537_10119137	Not Available	980	Open in IMG/M
3300031768\|Ga0318509_10197533	Not Available	1118	Open in IMG/M
3300031780\|Ga0318508_1091047	Not Available	841	Open in IMG/M
3300031780\|Ga0318508_1205267	Not Available	565	Open in IMG/M
3300031845\|Ga0318511_10489814	Not Available	568	Open in IMG/M
3300031847\|Ga0310907_10739087	Not Available	547	Open in IMG/M
3300031890\|Ga0306925_10757117	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300031890\|Ga0306925_10820407	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300031890\|Ga0306925_11546273	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300031910\|Ga0306923_10625702	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300031942\|Ga0310916_11505377	Not Available	548	Open in IMG/M
3300031945\|Ga0310913_11026244	Not Available	577	Open in IMG/M
3300031946\|Ga0310910_10821210	Not Available	731	Open in IMG/M
3300031947\|Ga0310909_10574688	Not Available	942	Open in IMG/M
3300032025\|Ga0318507_10366812	Not Available	627	Open in IMG/M
3300032039\|Ga0318559_10395451	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300032060\|Ga0318505_10230867	Not Available	869	Open in IMG/M
3300032060\|Ga0318505_10509830	Not Available	567	Open in IMG/M
3300032065\|Ga0318513_10114021	Not Available	1272	Open in IMG/M
3300032076\|Ga0306924_11589709	Not Available	689	Open in IMG/M
3300032261\|Ga0306920_101936665	Not Available	827	Open in IMG/M
3300032261\|Ga0306920_102958070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300032261\|Ga0306920_103151546	Not Available	618	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.19%
Host-Associated	Host-Associated	18.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.24%
Plants	Host-Associated → Plants	18.81%
Aquatic	Environmental → Aquatic	4.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.85%
Sediment	Environmental → Aquatic → Sediment	4.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.97%
Loam	Environmental → Terrestrial → Soil → Loam	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1101665354	3300000956	Soil	DRLEVSVSFDEGRGYVATAAELRQPVMALSLGGLRRKIEIALLQRRDKAL*
Ga0068869_1004027941	3300005334	Miscanthus Rhizosphere	MPDDRLEVSVTFDERGYIGSAPELRQAVVALSLGLRRKIEIAMLPDDVRVVL
Ga0070688_1015530131	3300005365	Switchgrass Rhizosphere	MREERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLP
Ga0070659_1000539954	3300005366	Corn Rhizosphere	MREERLEVSVTFDERHGYIASEPERRSAVVALSLGGLRRKIEI
Ga0070659_1021163292	3300005366	Corn Rhizosphere	VVMSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRR
Ga0066700_108245272	3300005559	Soil	MRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRRRIEALMLPDSV
Ga0070664_1021963462	3300005564	Corn Rhizosphere	MREERLEVSVTFDERHGYIASEPELRSAVVALSLGGLRRKIEIAMLPD
Ga0068861_1003463783	3300005719	Switchgrass Rhizosphere	MSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDV
Ga0081455_100647304	3300005937	Tabebuia Heterophylla Rhizosphere	MRDERLEVSVTFDERRGYVGTAPDLRAPVVALSLGGCGARSRR*
Ga0070712_1017974142	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MREERLEVSVTFDPAKGYIGTAAELRQPVTALSLGGLRRRIEGLMLPDEV
Ga0075435_1011438831	3300007076	Populus Rhizosphere	MREERLEVSVTFDARHGYVASAPELRSAVVALSLGGLRRKIEIAM
Ga0066709_1003948601	3300009137	Grasslands Soil	MRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRRR
Ga0105241_125986211	3300009174	Corn Rhizosphere	MREERFEVSVTFDERHGYVASAPELRSAVVALSLGGLRRKIEIAMLPDDVRVVLQL
Ga0105249_103975251	3300009553	Switchgrass Rhizosphere	MSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDVR
Ga0105249_104085143	3300009553	Switchgrass Rhizosphere	LERLEESVTFDERHGYVASAPELRSPVMALSPGGLRRKIEVLMVPR*
Ga0134124_102357553	3300010397	Terrestrial Soil	MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGL
Ga0134127_118533142	3300010399	Terrestrial Soil	MSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLR
Ga0137399_117139182	3300012203	Vadose Zone Soil	MRDERFEVTVTFDERRGYIGSAPELRSPVVALSLGGMRRRIEALM
Ga0137381_115068401	3300012207	Vadose Zone Soil	MRDERLEVSVTFDERRGYVATAPELRAPVTALSLGGLR
Ga0137386_108882102	3300012351	Vadose Zone Soil	MSGDRLEVSVSFDERCGYFGSHPELRSPVVALSLGGLRRKIETLMLPDDVHVVLHLD
Ga0137369_103990751	3300012355	Vadose Zone Soil	VSVTFDPAKGYAATAPEQREPVLALSLGGVRRRVEALLLPDDLHVVLQLDV
Ga0137371_104663551	3300012356	Vadose Zone Soil	MSGDRLEVSVTFDAERGYIGSAPELRTPVTALSLGGLRRRIEALMIPDDV
Ga0150984_1030415302	3300012469	Avena Fatua Rhizosphere	MPDKRLEVSVTFDQRGYIGSAPELRSAVVALSLGGLRRKIEALLLPAEV
Ga0150984_1196560152	3300012469	Avena Fatua Rhizosphere	MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDVRVVLQL
Ga0150984_1199452181	3300012469	Avena Fatua Rhizosphere	MREERLEVSVTFDERHGYIGSAPELRSAMVALSLGG
Ga0157354_10591361	3300012517	Unplanted Soil	MREELLEVSVTFDERGYIGSAPELRQAVVALGLGVLRRKIEIAMFA*
Ga0137397_104929652	3300012685	Vadose Zone Soil	VEVSVTFDERGYIGSAPELRSAVVALSLGGLRRKIEIALLLPAEVGIVL
Ga0137404_106615901	3300012929	Vadose Zone Soil	MMGADRFEVSVTFDQRRGGYVGTAPELKAPVVALSLGGLRRRIE
Ga0164306_110146271	3300012988	Soil	MREARLEVSVTFDERHGYVGSAAELRSPVMALSLGGLRRKIEVL
Ga0164305_108041222	3300012989	Soil	MAITVRGGDVNVTLDERGYIGSAPELRQPVVALSLGGLRHKIEALLLP
Ga0157369_119865612	3300013105	Corn Rhizosphere	MREERLEVGVTFDERGYIGSAPELRQAVVALSLGGLRR
Ga0157375_132712291	3300013308	Miscanthus Rhizosphere	LAKLDVTVTYDARHGYIATALELRQPVVALSLGGLRRRIEALMV
Ga0132255_1029340791	3300015374	Arabidopsis Rhizosphere	MSGDRLEVNVTFDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDVR
Ga0182036_106501681	3300016270	Soil	SVTFDAAKGYVATAAELRQPVVALSLGGLRRRIGDAA
Ga0182033_109397141	3300016319	Soil	LLRRWPQRGSIMASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPD
Ga0182035_116491212	3300016341	Soil	MASEDRLTVGVTYDESRGYVGSAPELRQPVVALSLGG
Ga0182035_120121611	3300016341	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLR
Ga0182034_105453534	3300016371	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVVVLL
Ga0182039_116740811	3300016422	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVV
Ga0182038_102391741	3300016445	Soil	MRLDVTVTYAAERGYVASAPELRQPIVALSLGGLRRRIEIALLPDDVDVQL
Ga0184605_102442782	3300018027	Groundwater Sediment	MSGDRFEVNVTFDAAHGYVASAPELRQPVVALSLGGLRRRIEI
Ga0184608_101538164	3300018028	Groundwater Sediment	MSADRLDVTVTYDASCGYIGSVPGLNAPVVALSLGG
Ga0184620_102063671	3300018051	Groundwater Sediment	MTDAACGVTVTYEAGHGYITTALELRQPVVALSLGGLRRRIEA
Ga0184611_10518351	3300018067	Groundwater Sediment	SVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLEEEEPVPVLSELGPP
Ga0184612_103544401	3300018078	Groundwater Sediment	MPDERLEVSVTFDERGYIGSAPELRSSVVALSLGGLRRKIE
Ga0066667_110594362	3300018433	Grasslands Soil	MRDERLEVSVTFVPAKGYVASAPELRQPVVAVSLGGLRR
Ga0190270_107023442	3300018469	Soil	MPDGRLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEIAML
Ga0190270_115753502	3300018469	Soil	MTRLSVDVSFDPAHGYVGTAPELRTAVRALSLNGLRKQIEDHPPSVA
Ga0190270_116260412	3300018469	Soil	MSGDRLEVNVTFDERGYIGSAPELRWPVMALSLGGLRRKIE
Ga0190274_124548551	3300018476	Soil	MSGDKLEIKVTFEERGYIGSAPELRQAVVALSLGGLRRKIEIAMLPDDV
Ga0193713_10841171	3300019882	Soil	MREERLEVSVTFDERHGYVASAPELRWPVVALSLGGLRRKI
Ga0193728_11255012	3300019890	Soil	MREERLEVSVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLLP
Ga0193755_12057831	3300020004	Soil	MSGDRLEVNVTFDERGYIGSAPELRQLVVALSLGGLRRKIEALMVPD
Ga0193697_11525172	3300020005	Soil	MPEERLEVSVTFDARHGYVASAPELRSVVVALSLGGLRRKIEIAMLPDDVRVVLQL
Ga0193696_10932342	3300020016	Soil	MSGDRLEVNVTFDERGYIGSAPELRWPVMALSLGGLRRKIEALMMPDEVRVMLQL
Ga0207690_106398211	3300025932	Corn Rhizosphere	MSGNRLDVTVTYDAQHGYIASAPELRQPVVALSLGGLRRRIE
Ga0207690_107435303	3300025932	Corn Rhizosphere	MREERLEVSVTFDERGYIGSAPELRWPVTALSLGGLRRKIEIAMLPDDVRVV
Ga0207678_104096042	3300026067	Corn Rhizosphere	MSGDRLEVNVTCDERGYVGSAPELRSAVVALSLGGLRRKIEIAMLPDDVRVVLQLD
Ga0307321_11082382	3300028704	Soil	MSGDRLEVNVTFDERGYIGSAPELRSSAMALSLGGLRRKIEIAMLPDDVRV
Ga0307295_101437882	3300028708	Soil	MSGDRLEVNVTFDERGYIGSAPELRQAVVALSLGGLRR
Ga0307293_101262292	3300028711	Soil	MSGDRLEVNVTFDERGYIGSAPELRSSAMALSLGGLRRKIEIAM
Ga0307285_101251171	3300028712	Soil	LEVSVTFDERHGYIASAPELRTAVVALSLGGLRRKTPWWR
Ga0307285_101295082	3300028712	Soil	MSGKRLEVTVSYDAERGYVASAPELRQPVTALSLGDLRRRIEALMLPDDPVI
Ga0307313_100047373	3300028715	Soil	MREERLEVSVTFDERHGYIASAPELRTAVVALSLGGLRRKTPWWR
Ga0307313_100224973	3300028715	Soil	MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLR
Ga0307307_101760171	3300028718	Soil	MSGDRFEENVTFDAAHGYVASAPELRQPVVALSLGGLRRRIEI
Ga0307317_101265821	3300028720	Soil	MREERLEVSVTFDERHGYVASAPELRTAVVALSLGGLRRKIEALLLPAEVE
Ga0307319_100413793	3300028722	Soil	MRDERLEVSVTFDERRGYIGSAAELRSPVVALRLGGLRRKVEIALLP
Ga0307320_100759242	3300028771	Soil	MREERLEVSVTFDERHGYIGSAPELRSAVVALSLGGLRR
Ga0307290_102228472	3300028791	Soil	MREERLEVSVTFDERHGYVASAPELRSAVVALSLGGLRRRIEIAMLPDNVRVVLH
Ga0307299_100770982	3300028793	Soil	MREERLEVSVTFDERHGYVASAPELRSAVVALSLG
Ga0307308_1000622210	3300028884	Soil	MSGDRLEVNVTFDERGYIGSAPELRQLVVALSLGGLRRKIEALMVPDEPIVVLQ
Ga0308201_103106521	3300031091	Soil	MREERVEVSVTFDERHGYIGSAPELRSSVTALSLGGLRRKIE
Ga0318538_104801521	3300031546	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEVVVL
Ga0307469_115760582	3300031720	Hardwood Forest Soil	MPDERLEVSVTFDERGYIGSAPELRQAVVALSLGGLRRKIEI
Ga0306918_112009371	3300031744	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIA
Ga0306918_114934352	3300031744	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAM
Ga0318537_101191371	3300031763	Soil	MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAM
Ga0318509_101975334	3300031768	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVDGVPRRGD
Ga0318521_100681345	3300031770	Soil	MRLDVTVTYAAERGYVASAPELRQPIVALSLGGLRRRIEIALLPDDVDVQLLLDGH
Ga0318508_10910471	3300031780	Soil	MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKIEIAMLPDEVVVLLSLD
Ga0318508_12052672	3300031780	Soil	MSKGGRFEVAVTFEERRGYVGSAPELCQPVVALSLGGLRRKVEIAMLPDDVIVTLNL
Ga0318511_104898141	3300031845	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDEAVVLLSL
Ga0310907_107390871	3300031847	Soil	MRDERLEVSVTFDERHGYIASAAELRRAVVALSLGGLRRKDRDRDAA
Ga0306925_107571172	3300031890	Soil	MASEDRLTVAVTYDESRGYVGSASELRQPVVALSLGGLRRKVEIAMLPDEVVVLLSLDRTARLER
Ga0306925_108204071	3300031890	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLPD
Ga0306925_115462732	3300031890	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAML
Ga0306923_106257023	3300031910	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLP
Ga0310916_115053773	3300031942	Soil	MASEDRLTVGVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDE
Ga0310913_110262441	3300031945	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPD
Ga0310910_108212103	3300031946	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPAVALSLGGLRRKVEIAMLPDEVVVLLS
Ga0310909_105746883	3300031947	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEI
Ga0318507_103668121	3300032025	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSL
Ga0318559_103954511	3300032039	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRR
Ga0318505_102308671	3300032060	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGL
Ga0318505_105098301	3300032060	Soil	MSKGGRFEVAVTFEERRGYVGSAPALCQPVVALSLGGLRRKVEIAMLPDDVIVTL
Ga0318513_101140211	3300032065	Soil	MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKIEIAMLPDEVVVLL
Ga0306924_115897091	3300032076	Soil	MSKGGRFEVAVTFEERRGYVGSAPELCQPVVALSLGGLRRKVEIAMLRDDVIVTLNLDRA
Ga0306920_1019366651	3300032261	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRKVEIAMLPDE
Ga0306920_1029580703	3300032261	Soil	MASEHRLTVAVTYDESRGYVGSAPELRQPVVALSLG
Ga0306920_1031515463	3300032261	Soil	MASEDRLTVAVTYDESRGYVGSAPELRQPVVALSLGGLRRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103632

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences