Metagenome / Metatranscriptome Family F103674

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103674
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	87 residues
Representative Sequence	MLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG
Number of Associated Samples	75
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	46.53 %
% of genes near scaffold ends (potentially truncated)	68.32 %
% of genes from short scaffolds (< 2000 bps)	96.04 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.436 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.713 % of family members)
Environment Ontology (ENVO)	Unclassified (24.752 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (81.188 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.36% β-sheet: 0.00% Coil/Unstructured: 39.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00313	CSD	3.96
PF11953	DUF3470	1.98
PF00484	Pro_CA	1.98
PF01434	Peptidase_M41	0.99
PF13180	PDZ_2	0.99
PF03976	PPK2	0.99
PF00239	Resolvase	0.99
PF14294	DUF4372	0.99
PF07007	LprI	0.99
PF07045	DUF1330	0.99
PF02913	FAD-oxidase_C	0.99
PF01527	HTH_Tnp_1	0.99
PF05235	CHAD	0.99
PF05036	SPOR	0.99
PF00144	Beta-lactamase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	1.98
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.99
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.99
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.99
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.99
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.99
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.99
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.99
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.99
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.99
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
All Organisms	root	All Organisms	43.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
cellular organisms	root	All Organisms → cellular organisms	43.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	25.74 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.99 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.99 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	20.79 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.98 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.99 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.98 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.99 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.44 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.98 %
Hyphomicrobium sp. 32-62-53	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 32-62-53	0.99 %
Bradyrhizobium sp. BRP56	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BRP56	0.99 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.99 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.99 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100402208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1248	Open in IMG/M
3300005165\|Ga0066869_10026948	Not Available	904	Open in IMG/M
3300005332\|Ga0066388_104871669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	683	Open in IMG/M
3300005332\|Ga0066388_107093806	Not Available	563	Open in IMG/M
3300005439\|Ga0070711_101901216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	523	Open in IMG/M
3300005764\|Ga0066903_101927911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1132	Open in IMG/M
3300006059\|Ga0075017_101365157	Not Available	557	Open in IMG/M
3300006102\|Ga0075015_100770142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	576	Open in IMG/M
3300006175\|Ga0070712_100404921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1128	Open in IMG/M
3300006176\|Ga0070765_101428956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	652	Open in IMG/M
3300007982\|Ga0102924_1048570	Not Available	2515	Open in IMG/M
3300007982\|Ga0102924_1273897	Not Available	684	Open in IMG/M
3300009521\|Ga0116222_1140418	Not Available	1040	Open in IMG/M
3300009521\|Ga0116222_1168517	Not Available	943	Open in IMG/M
3300009521\|Ga0116222_1313389	Not Available	678	Open in IMG/M
3300009521\|Ga0116222_1480654	Not Available	543	Open in IMG/M
3300009522\|Ga0116218_1009836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4279	Open in IMG/M
3300009672\|Ga0116215_1127848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1133	Open in IMG/M
3300009698\|Ga0116216_10261660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1056	Open in IMG/M
3300010361\|Ga0126378_12368512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	606	Open in IMG/M
3300010376\|Ga0126381_101322635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1042	Open in IMG/M
3300010379\|Ga0136449_100530404	Not Available	2032	Open in IMG/M
3300010379\|Ga0136449_100775671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1590	Open in IMG/M
3300010379\|Ga0136449_101105370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1261	Open in IMG/M
3300010379\|Ga0136449_101443252	Not Available	1059	Open in IMG/M
3300010379\|Ga0136449_101764332	Not Available	928	Open in IMG/M
3300010379\|Ga0136449_102565201	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300010379\|Ga0136449_103193345	Not Available	633	Open in IMG/M
3300010379\|Ga0136449_103368401	Not Available	613	Open in IMG/M
3300011120\|Ga0150983_16303283	Not Available	608	Open in IMG/M
3300012951\|Ga0164300_10023523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	2168	Open in IMG/M
3300012955\|Ga0164298_10102957	Not Available	1516	Open in IMG/M
3300012955\|Ga0164298_10408288	Not Available	880	Open in IMG/M
3300012957\|Ga0164303_10478893	Not Available	791	Open in IMG/M
3300012958\|Ga0164299_10526606	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300012960\|Ga0164301_10328625	Not Available	1042	Open in IMG/M
3300012961\|Ga0164302_10463530	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300012984\|Ga0164309_10226785	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300012984\|Ga0164309_10273911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1203	Open in IMG/M
3300012984\|Ga0164309_11439769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	589	Open in IMG/M
3300012986\|Ga0164304_10732519	Not Available	755	Open in IMG/M
3300012987\|Ga0164307_10489886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	927	Open in IMG/M
3300012988\|Ga0164306_10692847	Not Available	809	Open in IMG/M
3300016294\|Ga0182041_11857399	Not Available	559	Open in IMG/M
3300016319\|Ga0182033_11510059	Not Available	606	Open in IMG/M
3300016387\|Ga0182040_11408547	Not Available	590	Open in IMG/M
3300016422\|Ga0182039_10589280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	971	Open in IMG/M
3300016422\|Ga0182039_11613997	Not Available	592	Open in IMG/M
3300016422\|Ga0182039_11906731	Not Available	546	Open in IMG/M
3300016445\|Ga0182038_10462812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1075	Open in IMG/M
3300016445\|Ga0182038_11636639	Not Available	579	Open in IMG/M
3300017823\|Ga0187818_10575756	Not Available	508	Open in IMG/M
3300017943\|Ga0187819_10214495	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300017946\|Ga0187879_10708017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	561	Open in IMG/M
3300018001\|Ga0187815_10212833	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300020580\|Ga0210403_11238207	Not Available	573	Open in IMG/M
3300020582\|Ga0210395_10150553	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300020582\|Ga0210395_10861986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BRP56	674	Open in IMG/M
3300020583\|Ga0210401_11602916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	508	Open in IMG/M
3300021088\|Ga0210404_10871415	Not Available	515	Open in IMG/M
3300021170\|Ga0210400_10586147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	920	Open in IMG/M
3300021171\|Ga0210405_11216934	Not Available	557	Open in IMG/M
3300021178\|Ga0210408_11297182	Not Available	552	Open in IMG/M
3300021178\|Ga0210408_11413608	Not Available	524	Open in IMG/M
3300021180\|Ga0210396_11289359	Not Available	608	Open in IMG/M
3300021403\|Ga0210397_10255371	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300021406\|Ga0210386_11745197	Not Available	513	Open in IMG/M
3300021420\|Ga0210394_10467911	Not Available	1109	Open in IMG/M
3300021420\|Ga0210394_11087385	Not Available	690	Open in IMG/M
3300021432\|Ga0210384_11642929	Not Available	548	Open in IMG/M
3300021433\|Ga0210391_11071237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 32-62-53	627	Open in IMG/M
3300021474\|Ga0210390_11316118	Not Available	579	Open in IMG/M
3300021474\|Ga0210390_11332252	Not Available	574	Open in IMG/M
3300021478\|Ga0210402_10519052	Not Available	1106	Open in IMG/M
3300021479\|Ga0210410_10978916	Not Available	734	Open in IMG/M
3300022557\|Ga0212123_10749310	Not Available	594	Open in IMG/M
3300027074\|Ga0208092_109155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	612	Open in IMG/M
3300027570\|Ga0208043_1136275	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300029636\|Ga0222749_10129403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1213	Open in IMG/M
3300030494\|Ga0310037_10352092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	618	Open in IMG/M
3300030707\|Ga0310038_10267397	Not Available	784	Open in IMG/M
3300031545\|Ga0318541_10618300	Not Available	606	Open in IMG/M
3300031682\|Ga0318560_10421424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	723	Open in IMG/M
3300031708\|Ga0310686_100140976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1535	Open in IMG/M
3300031719\|Ga0306917_10705415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	793	Open in IMG/M
3300031768\|Ga0318509_10843128	Not Available	507	Open in IMG/M
3300031890\|Ga0306925_11692211	Not Available	611	Open in IMG/M
3300031897\|Ga0318520_10709823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	629	Open in IMG/M
3300031910\|Ga0306923_10902114	Not Available	968	Open in IMG/M
3300031910\|Ga0306923_11976842	Not Available	593	Open in IMG/M
3300031912\|Ga0306921_11034040	Not Available	925	Open in IMG/M
3300031945\|Ga0310913_10777618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	676	Open in IMG/M
3300031946\|Ga0310910_10699032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	801	Open in IMG/M
3300031947\|Ga0310909_10874363	Not Available	739	Open in IMG/M
3300032001\|Ga0306922_10486837	Not Available	1316	Open in IMG/M
3300032001\|Ga0306922_10703943	Not Available	1063	Open in IMG/M
3300032160\|Ga0311301_11334690	Not Available	902	Open in IMG/M
3300032160\|Ga0311301_12765856	Not Available	537	Open in IMG/M
3300032261\|Ga0306920_102194487	Not Available	768	Open in IMG/M
3300032261\|Ga0306920_102377829	Not Available	732	Open in IMG/M
3300033289\|Ga0310914_10173785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1914	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.09%
Aquatic	Environmental → Aquatic	8.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.09%
Freshwater	Environmental → Aquatic → Freshwater	3.96%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.97%
Sediment	Environmental → Aquatic → Sediment	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.18%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.97%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.71%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	19.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.86%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.97%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300027074	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1004022082	3300002245	Forest Soil	MLYTAEKQPAVFFDTCARLLPNDVRVTVEQSLPGNLSMEDSQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG*
Ga0066869_100269483	3300005165	Soil	EVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG*
Ga0066388_1048716691	3300005332	Tropical Forest Soil	MLYTAEKQPAVFFATCARLIGPEVKLTIEQQQQGNLSPADWNLMLEIVDAVRQAIPDASNRAPGAVPEHVLGALRMADAKCVENAHSIQSSLLSSKN
Ga0066388_1070938061	3300005332	Tropical Forest Soil	AMVKTAKTNPTVFFATCARLIPNDVRVTVEQQLPGNLSMEDWQVMKEIIAAVRQAIPDASSASPGAVFEHVLAALRQTEAKTIGLDCMEKPLENSRSEHS*
Ga0070711_1019012161	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG*
Ga0066903_1019279113	3300005764	Tropical Forest Soil	FFATCARLIGPEVKLTIEQQLPGNLSMEDWQATKEIIAAVRQAIPDASSKPPGAVLAHVLEALRMAETKAIDCPKND*
Ga0075017_1013651571	3300006059	Watersheds	ILYTAEKQPAVFFATSARLLPSDVRVTVEQSLPGNLSMEDWQMMKEVIAAVQAIPDAANAPPGAVLEHVLTALRAADAKVLDSSENDHSTDSSIGFA*
Ga0075015_1007701421	3300006102	Watersheds	MVKTARTNPAVFFATCARLIPNDVRVTVEQQLPGNLSMEDWQVMKEIIAAVRQAIPDAANAPPGAVLEHVLTALRAADAKVLDSSENDLFMDS*
Ga0070712_1004049211	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLYTAEKQPAVFFATCARLLPNDVRVTVEQQLPGNLSIEDWTIMREIVAAVRQAIPDAANRQAGAVLEHVLSALKASDAKVLNCPKSD*
Ga0070765_1014289562	3300006176	Soil	MLKTAKTNPVTFFAVCARLIGPEVKLTIEQSLPGNLSAQDWAIMHEIVDAVKTAVPDAANRPAGAVLEHVLSALKASDAKVLNCPKN
Ga0102924_10485706	3300007982	Iron-Sulfur Acid Spring	LLPNDVRVTVEQQLPGNLSPADWNLMLEIVDAVKQAIPDASNRPPGAVLEHVLDALRQAEARTINSSERDR*
Ga0102924_12738972	3300007982	Iron-Sulfur Acid Spring	DNPSVFFATCARLIPNDVRVTVEQQLPGNLSMEDWQAMKEVIAAVRQAIPDAAERPAGEVLQHVLTALRKADATIVGYAENPSTDESKS*
Ga0116222_11404181	3300009521	Peatlands Soil	MLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQTMREIIAAVRQAIPDAANAPPGAVLEHVLSALRASDAKVLNCPKNGRF*
Ga0116222_11685171	3300009521	Peatlands Soil	MIKTAQDNPAVYFATCARLIGPEVKLTIEQSLPGNLSMEDWQVVREIVEAVRQALPDAADRRPGAVLEHVLTALRSADAKLLDCPERIQ*
Ga0116222_13133891	3300009521	Peatlands Soil	KQPAVFFATCARLLPNDVRVTVEQQLPGNLSPADWNLMLEIVDAVKQAIPMPRRGPPGAVLEHVLDALRQAEARTINSSERDR*
Ga0116222_14806542	3300009521	Peatlands Soil	FFGICARLLPNDVRVTVEQCLPGNLSMDDWQTMKEVIAAVRQAIPDAANAPPGAVLEHVLTALRAADAKVLDSSENA*
Ga0116218_10098364	3300009522	Peatlands Soil	MVKTARTNPAVFFATCARLIPNDVRVTVQQQLPGNLSAEDWAMMREIIGAVRQAVPDAANAPPGAVLEHVLTALRAADAKVLDSSENA*
Ga0116215_11278482	3300009672	Peatlands Soil	LKDLAEVWSEEGRGAMLHTAKTNPTVFFATCARLIGPEVKLTIEQTLPGNLSMEDWTIMREIIAAVRQAIPDAANRPAGAVLEHVLSAL
Ga0116216_102616602	3300009698	Peatlands Soil	LKDLAEVWSEEGRGAMLHTAKTNPTVFFATCARLIGPEVKLTIEQTLPGNLSMEDWTIMREIIAAVRQAIPDAANRPAGAVLEHVLS
Ga0126378_123685121	3300010361	Tropical Forest Soil	MLYTAEKQPAVFFATCARLIGPEVKLTIEQQQQGNLSPADWNLMLEIVDAVRQAIPDASNRAPGAVPEHVLGALRMADAKCVENAHSIQSSLL
Ga0126381_1013226353	3300010376	Tropical Forest Soil	MDGRQQPATFFAVCSRLIGPEVKLTIEQSLPGKLSMEDWQTMKEVIAAVRQAIPDASSKPPSAVLEHVLSALRQADAKLIADCKT*
Ga0136449_1005304041	3300010379	Peatlands Soil	VFFATCARLIGPEVKLTIEQSLPGNLSMEDWQVMREIVEAVRQALPDAADRRPGAVLEHVLTALRSADAKLLDCPERIQ*
Ga0136449_1007756711	3300010379	Peatlands Soil	MEWTADNQPATFFAVCARLIGPEVKITLEQSLPGNLSVEDWQAMKEVLSAVREGLPSADQMPPSQVFERVL
Ga0136449_1011053703	3300010379	Peatlands Soil	MLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSVEDWQTMKEVIAAINQAVSDAASRPPGEVFRQVLGALSANI*
Ga0136449_1014432521	3300010379	Peatlands Soil	KRTMISTAQTNPAVFFATCARLIGPEVKLTIEQSLPGDLSMEDWQAMKEVIAAVRQAIPDAASQPPGFVFGHVLSALKQAQAKTINNNMHSSNGESA*
Ga0136449_1017643321	3300010379	Peatlands Soil	TMISTAQTNPAVFFATCARLIGPEVKLTIEQSLPGNLSMEDWQTMREIIAAVRQVIPDAANAPPGAVLEHVLSALRDCPKNAQNMHSSNGESA*
Ga0136449_1025652011	3300010379	Peatlands Soil	MIKTATDQPAVFIATCARLIGPEVKLTIEQSLPGGLDHSDWALLCEMIEAVRQALPDAADRRPGAVLEHVLGTLRQADAKVL
Ga0136449_1031933452	3300010379	Peatlands Soil	RGCAAMEKTAIDEPGIFFATCARLIPNDVRVTVEQQLPGNLSMEDWQVMKEIIAAVRQAIPDASSKPPGAVLQHVLEALRAAQAKTIGA*
Ga0136449_1033684011	3300010379	Peatlands Soil	DVRVTVEQQLPGNLSPADWNLMLEIVDAVKQAIPMPRRGPPGAVLEHVLDALRQAEARTINSSERGR*
Ga0150983_163032832	3300011120	Forest Soil	EKTAIDQPAVFFATCARLIAPEVKLTIEQMLPGNLSMEDWQVMREIVAAVRQAIPDAAGAPPGAVLEHVPEALRQAEARTINSSERD*
Ga0164300_100235232	3300012951	Soil	TNPAVFFATCARLIPNDVRVTVQQQLPGNLSAEDWAMMREIIGAVRQAVPDAANAPPGAVLEHVLTALRAADAKVLDSSENA*
Ga0164298_101029572	3300012955	Soil	LAEVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG*
Ga0164298_104082881	3300012955	Soil	TCARLIPNDVRVTVEQQLPGNLSIEDWQVMKEIIAAVRQAIPDAANAPPGAVLEHVLGALQAVEAKIINCSEKD*
Ga0164303_104788932	3300012957	Soil	YTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDVSSKPPGAVLEHVLSALRQADAKLIG*
Ga0164299_105266061	3300012958	Soil	MVKTARTSPATFFAVRARLIGPEVKHTIEQSLPGNLSMEDWQTMKEIIAAVRQALPTAAAHRPGAVLEHLLGALRQADAKVLNCPKKGWS*
Ga0164301_103286251	3300012960	Soil	KGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG*
Ga0164302_104635302	3300012961	Soil	MVKTARTSPATFFAVRARLIGPEVKHTIEQSLPGNLSMEDWQTMKEIIAAVHQALPAAAAHRPGAVLEHVLGALRQADAKVLNCPKKEWS*
Ga0164309_102267852	3300012984	Soil	MVKTARTSPATFFAVRARLIGPEVKHTIEQSLPGNLSMEDWQTMKEIIAAVRQALPAAAAHRPGAVLEHVLGALRQADAKVLNCPKKGWS*
Ga0164309_102739113	3300012984	Soil	LAEVWAEKGKASMFYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG*
Ga0164309_114397691	3300012984	Soil	LAEVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQVMKEIIAAVRQALPAAAAHRPGAVLEHVLGALR
Ga0164304_107325191	3300012986	Soil	MEKTAIDQPGVFFATCARLIGPEVKLTIEQTLPGNLSMEDWQVMREIVAAVRQAIPDAAGAPPGAVLEHVLSALRQADAKLIG*
Ga0164307_104898862	3300012987	Soil	LAEVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG*
Ga0164306_106928472	3300012988	Soil	SEGGGETMVKTARTNPAVFFATCARLIPNDVRVTVQQQLPGNLSAADWAMMREIIGAVRQAVPDAANAPPGAVLEHVLTALRAADAKVLDSSENA*
Ga0182041_118573991	3300016294	Soil	PGVFFATCARLLPNDVRVTVEQSLPGNLNMEDWQTMKEVIAAVRQAIPDAGSKPPGAVLEHVLTALRAQQSRDITEIALANSDA
Ga0182033_115100592	3300016319	Soil	YVGPVVTRNRRVFFATCLIGPEVKLTIEQQLPGNLSMEDWQAMKDIIAAVRQTIPDAASAPPGAVLEHALGALRAAHAKPIELSEE
Ga0182040_114085471	3300016387	Soil	EVWAKHGRAAMEKTAQDQPGVFFATCVRLLPNDVRVTVEQSLPGNLNMEDWQTMKEVIAAVRQAIPDAGSKPPGAVLEHVLTALRAQQSRDITEIALANSDV
Ga0182039_105892801	3300016422	Soil	MLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQVMREIIAAVRQAIPDAASAPPGAVLEHVLGALRAAQAKPIELSEE
Ga0182039_116139972	3300016422	Soil	CARLLPNDVRVTLEQQLPGNLSMEDWQMMREIIAAVRQAIPDAASASPGAVFEHVLAALRQTEAKTIGLDCMEKPLENSRSEHS
Ga0182039_119067311	3300016422	Soil	MVKTAKNNPSVFFATCARLIPQDVKLTVEQQLPGNLSPEDWRIMREIVAAVRQAIPDASSKPPGAVLEHVLDALRQADAKMLNCRKNVRSSDGS
Ga0182038_104628122	3300016445	Soil	LYTAEKQPAVFFATCARLLPNDVRVSIEQSLPGGLGPEDWSLLREVIQAVRAGIPSADQMKPGEVFQGVLVALRAQHSRDITEIALK
Ga0182038_116366392	3300016445	Soil	DLAEVWAEKGKASMLYTAEKQPAVFFATRARLLPNDVRVTVEQSLPGNLSMEDWQTMKEVIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKTIEPDCTEKPSEN
Ga0187818_105757562	3300017823	Freshwater Sediment	TCARLIPNDVRVTVEQQLPGNLSAEDWSMMREIIGAVRQAVPDAAQRPAGEVLQHVLTALRQADATVVGYAENPSTDESKS
Ga0187819_102144951	3300017943	Freshwater Sediment	MLYTAEKQPAVFFATCARLLPNDVRVTVEQQLPGNLSPADWNLMLEIVDAVKQAIPDASNRPPGAVLEHVLDALAARPASSSQ
Ga0187879_107080171	3300017946	Peatland	VRRWSRRLGPNPAIFFATCARLIPNDVRVTVEQQLPGNLSMEDWQVMKEIIAAVRQAIPDASSKPPGAVLEHVLGALQAVEAKIINCSKKEQKTNSSIRSGKIHE
Ga0187815_102128332	3300018001	Freshwater Sediment	MEWTADNQPATFFAICARLIGPEVKLTIEQSLPGNLSMEDWQTMKEVIAAFRQALPDAADRRPGAVLEHVLSALRAA
Ga0210403_112382071	3300020580	Soil	RTNPAVFFATCARLIPNDVRVTVQQQLPGNLSAEDWAMMREIVEAVRQAIPDASSMPPGEVLQHVLSALGRADAKVIES
Ga0210395_101505531	3300020582	Soil	MVKTARTSPATFFAVRARLIGPEVKHTIEQSLPGNLSMEDWQTMKEIIAAVRQALPAAAAHRPGAVLEHVLGALRQADAKVLNCPKKEWS
Ga0210395_108619862	3300020582	Soil	VFFATCARLIGPEVKLTIEQSPNLSMDDWQTMKEVIEAVRQALPDAADRRPGAVLEHVLDALRQADAKTISGE
Ga0210401_116029161	3300020583	Soil	MFSAGFTRDLAEVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSA
Ga0210404_108714152	3300021088	Soil	RAGFTRDLAEVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG
Ga0210400_105861472	3300021170	Soil	MVKTARTNPAVFFATCARLIGPEVKLTIEQSLPGNLSMEDWQTMKEIIAAVRQALPAAAAHRPGAVLEHVLGALRQADAKVLNCPKKEWS
Ga0210405_112169341	3300021171	Soil	LAEVWAEKGKASMLYTAEKHPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADATLIG
Ga0210408_112971821	3300021178	Soil	DTCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDAAGAPPGAVLEHVLTALRAADAKVLDSSENN
Ga0210408_114136081	3300021178	Soil	QPAVFFATCARLLPNDVRVTVEQQLPGNLSIEDWTIMREIVTAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG
Ga0210396_112893591	3300021180	Soil	AGFTRDLAEVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG
Ga0210397_102553711	3300021403	Soil	MVKTARTSPATFFAVRARLIGPEVKHTIEQSLPGNLSMEDWQTMKEIIAAVRQALPAAAAHRPGAVLEHVLGALRQADAKVLNCPKKGWS
Ga0210386_117451971	3300021406	Soil	KGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGGLGPEDWALLQEVIQAVRLALPDAADRSPGAVLEHVLGALRQAEAKAIEPK
Ga0210394_104679113	3300021420	Soil	TRDLAEVWAEKGKASMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG
Ga0210394_110873852	3300021420	Soil	CARLIGPEVKLTIEQTLPGNLSMEDWQVMREIVAAVRQAIPDAAGAPPGAVLEHVPEALRQAEARTINSSERD
Ga0210384_116429291	3300021432	Soil	AVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG
Ga0210391_110712371	3300021433	Soil	KTAIDQPGVFFATCARLIGPEVKLTIEQTLPGDLSMEDWQVMKEIIAAVRQAIPDAANAPPGAVLEHVLTALRAADAKVLDSSENDLKMNSSICSD
Ga0210390_113161181	3300021474	Soil	YTAEKQPAVFFATCARLLPNDVRVTVEQSLPGGLGPEDWALLQEVIQAVRLALPDAADRSPGAVLEHVLGALRQAEAKAIEPK
Ga0210390_113322522	3300021474	Soil	YTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG
Ga0210402_105190523	3300021478	Soil	TCARLIGPEVKLTIEQQLPGNLSMEDWQVMREIVAAVRQAIPDAAGAPPGVVLEHVLGALRAAQAKPIELSE
Ga0210410_109789162	3300021479	Soil	SAGFTRDLAEVWAEKGKASMLYTAEKHPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALKQADAKLIG
Ga0212123_107493102	3300022557	Iron-Sulfur Acid Spring	LLPNDVRVTVEQQLPGNLSPADWNLMLEIVDAVKQAIPDASNRPPGAVLEHVLDALRQAEARTINSSERDR
Ga0208092_1091552	3300027074	Forest Soil	MVKTARTNPAVFFATCARLIPNDVRVTVEQQLPGNLSMEDWQVMKEIIAAVRQAIPDAANAPPGAVLEHVLGALQAVEAKIINCSEKDCKY
Ga0208043_11362751	3300027570	Peatlands Soil	LKDLAEVWADEGREAMLKTAKTNPTVFFATCARLIGPEVKLTIEQSLPGNLSMEDWQVMREVVSAVRQAIPDASSQPPGAVLQHVLAKLRD
Ga0222749_101294032	3300029636	Soil	MLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQMMKEIIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKLIG
Ga0310037_103520921	3300030494	Peatlands Soil	MVKTARTNPAVFFATCARLIPNDVRVTVQQQLPGNLSAEDWAMMREIIGAVRQAVPDAANAPPGAVLEHVLTALRAADAKVLDSSENA
Ga0310038_102673972	3300030707	Peatlands Soil	PAVFFATCARLIPNDVRVTVQQQLPGNLSAEDWAMMREIIGAVRQAVPDAANAPPGAVLEHVLTALRAADAKVLDSSENA
Ga0318541_106183001	3300031545	Soil	GKSSMLYTAEKQPAVFFATCARLIPNDVRVTVEQQLPGNLSMEDWQVMREIIAAVRQAIPDAASAPPGAVLEHALGALRAAHAKPIELSEE
Ga0318560_104214241	3300031682	Soil	MLYTAEKQPAVFFATCARLIGPEVKPTIEQQQQGNLSPADWNLMLEIVDAVRQAIPDASNRAPGAVPEHVLGALRMADAKCVEILFRAACCQAR
Ga0310686_1001409761	3300031708	Soil	MLYTAEKQPAVFFATCARLLPNDVRVTVEQQLPGNLSMEDWQVMKEIIAAVRQAIPDAANAPPGAVLEHVLGALQAVEAKIINCSMKNEQFYLLRPNSRMI
Ga0306917_107054152	3300031719	Soil	MLYTAEKQPAVFFATCARLIGPEVKLTIEQQQQGNLSPADWNLMLEIVDAVRQAIPDASNRAPGAVPEHVLGALRMADAKCIENAHSI
Ga0318509_108431282	3300031768	Soil	HGKSSMLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQVMREIIAAVRQAIPDASSKPPGAVLEHVLGALRAAQAKPIELSEE
Ga0306925_116922112	3300031890	Soil	VFFATCARLIPQDVKLTVEQQLPGNLSMEDWTIMREIVEAVRQAIPDASSKPPGAVLEHVLGALRAAQAKPIELSEE
Ga0318520_107098231	3300031897	Soil	MLYTAEKQPAVFFATCARLIGPEVKLTIEQQQQGNLSPADWNLMLEIVDAVRQAIPDASNRAPGAVPEHVLGALRMADAKCV
Ga0306923_109021142	3300031910	Soil	REAMVKTAKTNPTVFFATCARLIPNDVRVTVEQQLPGNLSMEDWQVMKEIVAAVRQAIPDAASAPPGAVLEHVLGALRAAQAKPIELSEE
Ga0306923_119768421	3300031910	Soil	MVKTAKTNPTAFLRLIPNDVRVTVEQQLPGNLSMEDWQVMREIVAAVRQAVPDASSQPPGAVLAHVLEALRMAETKAIDCPKNDRSGAPCL
Ga0306921_110340402	3300031912	Soil	ETMVKTARDNPAVFFATCARLIGPKVKLTIEQQLPGNLSPSDWNLMLEIVDAVKQTIPDASNRPPGAVLEHVLDALRQAEARTINSSENSRNTNSFICSDQNLK
Ga0310913_107776181	3300031945	Soil	MLYTAEKQPAVFFATCARLLPNDVRVTVEQSLPGNLSMEDWQVMREIIAAVRQAIPDASSKPPGAVLEHVLGALRAAQAKPIELSEE
Ga0310910_106990321	3300031946	Soil	MLYTAEKQPAVFFATCARLIGPEVKLTIEQQQQGNLSPADWNLMLEIVDAVRQAIPDASNRAPGAVPEHVLGALRMADAKCVENA
Ga0310909_108743632	3300031947	Soil	MVKTAKTNPTVFFATCARLIPNDVRVTVEQHLPSNLSPEDWTIMREIVEAVRQAIPDASSKPPGQVLEFVLEALRMAEAKTIDSSEKGRNTNSFICSDQNLK
Ga0306922_104868372	3300032001	Soil	MVKTAKTNPTVFFATCARLIPNDLRVTVEQQLPGNLSMEDWQVMREIIAAVRQAIPDAASAPPGAVLEHVLSALRALDAKMLNCPKNDRFF
Ga0306922_107039432	3300032001	Soil	ARLIPNDVRVTVEQQLPGNLSMEDWQVMKEIVAAVRQAIPDAASAPPGAVLEHVLGALRAAQAKPIELSEE
Ga0311301_113346901	3300032160	Peatlands Soil	MVKTTRTGPAVFFATCAGLIPNDVRVIVQQQLPGNLSAEDWAMMREIVEAVKQAIPDAAHAKLGEEFEHVLSALRQAEGK
Ga0311301_127658562	3300032160	Peatlands Soil	EKQPAVFFATCARLLPNDVRVTVEQQLPGNLSPADWNLMLEIVDAVKQAIPMPRRGPPGAVLEHVLDALRQAEARTINSSGGPIIRQFCLLRPNSLMISAADFTA
Ga0306920_1021944872	3300032261	Soil	MLYTAEKQPAVFFATRARLLPNDVRVTVEQSLPGNLSMEDWQTMKEVIAAVRQAIPDASSKPPGAVLEHVLSALRQADAKTIEPDCTEKPSEN
Ga0306920_1023778291	3300032261	Soil	PTTFFAVCARLIPSDVKLTVEQQLPGNLSMEDWQAMKDIIAAVRQTIPDAASAPPGAVLEHALGALRAAHAKPIELSEE
Ga0310914_101737852	3300033289	Soil	MLYTAEKQPAVFFATCARLIGPEVKLTIEQQQQGNLSPADWNLMLEIVDAVRQAIPDASNRAPGAVPEHVLGALRMADAKC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103674

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences