Metagenome Family F103731

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103731
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	77 residues
Representative Sequence	MSTRGTRLAFAFAIAVAFLLPKRVECGYPGATCGHAGRWRTTCTDFEIEPLGFYVIELVAHRDVGFAYSTGDECR
Number of Associated Samples	77
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	37.62 %
% of genes near scaffold ends (potentially truncated)	29.70 %
% of genes from short scaffolds (< 2000 bps)	76.24 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (11.881 % of family members)
Environment Ontology (ENVO)	Unclassified (32.673 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.574 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.21% β-sheet: 21.36% Coil/Unstructured: 52.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with PDB biological assemblies

PDB ID	Structure Name	Biol. Assembly	TM-score
5m8q	CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 MUTANT (T391V- R374S-Y362F) IN COMPLEX WITH KOJIC ACID	4	0.55621
5m8n	CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 IN COMPLEX WITH MIMOSINE	4	0.55619
5m8n	CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 IN COMPLEX WITH MIMOSINE	1	0.5547
5m8q	CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 MUTANT (T391V- R374S-Y362F) IN COMPLEX WITH KOJIC ACID	3	0.55409

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF01272	GreA_GreB	11.00
PF03330	DPBB_1	6.00
PF13620	CarboxypepD_reg	2.00
PF05726	Pirin_C	1.00
PF07690	MFS_1	1.00
PF00005	ABC_tran	1.00
PF03886	ABC_trans_aux	1.00
PF13360	PQQ_2	1.00
PF01370	Epimerase	1.00
PF00155	Aminotran_1_2	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	11.00
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	92.08 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	86.14 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	86.14 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	37.62 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	37.62 %
Unclassified	root	N/A	5.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105241486	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1042	Open in IMG/M
3300005332\|Ga0066388_100553413	All Organisms → cellular organisms → Bacteria	1780	Open in IMG/M
3300005334\|Ga0068869_100020388	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4545	Open in IMG/M
3300005334\|Ga0068869_100068478	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2622	Open in IMG/M
3300005338\|Ga0068868_101914544	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	562	Open in IMG/M
3300005340\|Ga0070689_100276024	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1393	Open in IMG/M
3300005340\|Ga0070689_100640632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	924	Open in IMG/M
3300005343\|Ga0070687_100083385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1750	Open in IMG/M
3300005343\|Ga0070687_100237190	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1126	Open in IMG/M
3300005365\|Ga0070688_100517340	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	902	Open in IMG/M
3300005440\|Ga0070705_100472499	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	946	Open in IMG/M
3300005444\|Ga0070694_100274947	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1282	Open in IMG/M
3300005454\|Ga0066687_10145204	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1249	Open in IMG/M
3300005545\|Ga0070695_100258141	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1271	Open in IMG/M
3300005548\|Ga0070665_100374409	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1431	Open in IMG/M
3300005617\|Ga0068859_101384063	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	776	Open in IMG/M
3300005617\|Ga0068859_102152470	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	616	Open in IMG/M
3300005836\|Ga0074470_10182150	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	716	Open in IMG/M
3300005840\|Ga0068870_10165277	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1316	Open in IMG/M
3300005843\|Ga0068860_101754124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	643	Open in IMG/M
3300005844\|Ga0068862_100466345	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1193	Open in IMG/M
3300005844\|Ga0068862_100818927	Not Available	910	Open in IMG/M
3300005844\|Ga0068862_101581701	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	662	Open in IMG/M
3300006028\|Ga0070717_10070709	All Organisms → cellular organisms → Bacteria → Proteobacteria	2909	Open in IMG/M
3300006028\|Ga0070717_10128009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2181	Open in IMG/M
3300006173\|Ga0070716_101681071	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	523	Open in IMG/M
3300006806\|Ga0079220_11816411	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	537	Open in IMG/M
3300006854\|Ga0075425_100616387	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1248	Open in IMG/M
3300006871\|Ga0075434_100937363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	880	Open in IMG/M
3300007076\|Ga0075435_101172331	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300009553\|Ga0105249_10058029	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3547	Open in IMG/M
3300009792\|Ga0126374_11503882	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	552	Open in IMG/M
3300009792\|Ga0126374_11724262	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	521	Open in IMG/M
3300010046\|Ga0126384_12311010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	519	Open in IMG/M
3300010359\|Ga0126376_10850828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	896	Open in IMG/M
3300010359\|Ga0126376_12003481	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	621	Open in IMG/M
3300010359\|Ga0126376_13230309	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	504	Open in IMG/M
3300010360\|Ga0126372_10612258	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1047	Open in IMG/M
3300010397\|Ga0134124_12704240	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540	Open in IMG/M
3300010399\|Ga0134127_10124963	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2296	Open in IMG/M
3300010399\|Ga0134127_12285188	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	620	Open in IMG/M
3300010400\|Ga0134122_10481565	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1118	Open in IMG/M
3300010400\|Ga0134122_12494648	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	566	Open in IMG/M
3300010401\|Ga0134121_10003569	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12934	Open in IMG/M
3300010403\|Ga0134123_10637059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1031	Open in IMG/M
3300010403\|Ga0134123_10661185	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1015	Open in IMG/M
3300011431\|Ga0137438_1000321	All Organisms → cellular organisms → Bacteria → Proteobacteria	10047	Open in IMG/M
3300011438\|Ga0137451_1004842	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3993	Open in IMG/M
3300011442\|Ga0137437_1004555	All Organisms → cellular organisms → Bacteria → Proteobacteria	4912	Open in IMG/M
3300011442\|Ga0137437_1159726	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	781	Open in IMG/M
3300012179\|Ga0137334_1050029	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	887	Open in IMG/M
3300012228\|Ga0137459_1000389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15686	Open in IMG/M
3300012943\|Ga0164241_10421406	Not Available	958	Open in IMG/M
3300012971\|Ga0126369_11906285	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	683	Open in IMG/M
3300013296\|Ga0157374_11869611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	626	Open in IMG/M
3300013297\|Ga0157378_10130615	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2325	Open in IMG/M
3300015053\|Ga0137405_1310252	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4245	Open in IMG/M
3300015053\|Ga0137405_1310252	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4245	Open in IMG/M
3300019874\|Ga0193744_1028139	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1058	Open in IMG/M
3300019880\|Ga0193712_1036806	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1059	Open in IMG/M
3300021082\|Ga0210380_10029292	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2352	Open in IMG/M
3300021363\|Ga0193699_10209533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	810	Open in IMG/M
3300023270\|Ga0247784_1018012	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1644	Open in IMG/M
3300025918\|Ga0207662_10023905	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3514	Open in IMG/M
3300025918\|Ga0207662_11208541	Not Available	537	Open in IMG/M
3300025936\|Ga0207670_10080626	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2275	Open in IMG/M
3300025936\|Ga0207670_11154216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	655	Open in IMG/M
3300025936\|Ga0207670_11711966	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	535	Open in IMG/M
3300025942\|Ga0207689_11584451	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	545	Open in IMG/M
3300025961\|Ga0207712_11059019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	721	Open in IMG/M
3300026035\|Ga0207703_12132639	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	537	Open in IMG/M
3300026075\|Ga0207708_10373639	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1174	Open in IMG/M
3300026088\|Ga0207641_12375416	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	529	Open in IMG/M
3300028379\|Ga0268266_11663831	Not Available	614	Open in IMG/M
3300028380\|Ga0268265_12066964	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	577	Open in IMG/M
3300028732\|Ga0302264_1005643	All Organisms → cellular organisms → Bacteria → Proteobacteria	2932	Open in IMG/M
3300028786\|Ga0307517_10315285	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	868	Open in IMG/M
3300028861\|Ga0302259_1004090	All Organisms → cellular organisms → Bacteria → Proteobacteria	3045	Open in IMG/M
3300028865\|Ga0302291_10032175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1660	Open in IMG/M
3300028865\|Ga0302291_10346804	Not Available	511	Open in IMG/M
3300028868\|Ga0302163_10253251	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	502	Open in IMG/M
3300030014\|Ga0302175_10182019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	506	Open in IMG/M
3300030048\|Ga0302273_1198501	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	584	Open in IMG/M
3300030294\|Ga0311349_10349423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1397	Open in IMG/M
3300031232\|Ga0302323_102592337	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	579	Open in IMG/M
3300031232\|Ga0302323_102800422	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	557	Open in IMG/M
3300031238\|Ga0265332_10046493	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1869	Open in IMG/M
3300031456\|Ga0307513_10004506	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	18579	Open in IMG/M
3300031507\|Ga0307509_10167388	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2084	Open in IMG/M
3300031507\|Ga0307509_10423712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1031	Open in IMG/M
3300031507\|Ga0307509_11005338	Not Available	501	Open in IMG/M
3300031616\|Ga0307508_10050787	All Organisms → cellular organisms → Bacteria → Proteobacteria	3689	Open in IMG/M
3300031616\|Ga0307508_10754569	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300031726\|Ga0302321_102035434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	667	Open in IMG/M
3300031726\|Ga0302321_102301205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	628	Open in IMG/M
3300031730\|Ga0307516_10372649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1090	Open in IMG/M
3300031902\|Ga0302322_100231032	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2040	Open in IMG/M
3300031938\|Ga0308175_100000236	All Organisms → cellular organisms → Bacteria	42274	Open in IMG/M
3300031996\|Ga0308176_11384698	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	748	Open in IMG/M
3300032180\|Ga0307471_100697860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1179	Open in IMG/M
3300033557\|Ga0316617_100155152	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1745	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.32%
Host-Associated	Host-Associated	31.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.40%
Plants	Host-Associated → Plants	31.68%
Aquatic	Environmental → Aquatic	7.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.86%
Peat	Environmental → Terrestrial → Peat	12.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.90%
Roots	Host-Associated → Plants → Roots	7.92%
Sediment	Environmental → Aquatic → Sediment	6.93%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.72%
Loam	Environmental → Terrestrial → Soil → Loam	17.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	11.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	9.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	7.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.92%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	7.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028861	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4	Environmental	Open in IMG/M
3300028865	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4	Environmental	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300030014	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3	Environmental	Open in IMG/M
3300030048	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_3	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1052414862	3300000364	Soil	MSTRGTRITIAIALIITFFLPKRVECGYPGTTCGHAGKWRTICTTFEVEPLGFYAIELLAGRNVGFAYSTEDDCR*
Ga0066388_1005534131	3300005332	Tropical Forest Soil	MRHPSMTTRGTRIAFAIAVVIGLALPKRVECGYPGATCGHAGKWRTVCTSYQVEPFGFYLIELVAQRDVGFAYESGDDCR*
Ga0068869_1000203888	3300005334	Miscanthus Rhizosphere	VAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVAHRDVGFAYTTGEDCR*
Ga0068869_1000684784	3300005334	Miscanthus Rhizosphere	MRHPSMSTRGTRMAFALAVAIAFLLPKRVECRYPGATCSHPGRWRTTCTDYEIEPLGFYVIELVAHRDVGFAYSSGDDCR*
Ga0068868_1019145442	3300005338	Miscanthus Rhizosphere	TRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVAHRDVGFAYTTGEDCR*
Ga0070689_1002760243	3300005340	Switchgrass Rhizosphere	VAFAFAIVVALLLPKRVECGYPGATCGHAGRWRTTCTDFEIEPLGFYVIELVAHRDVGFAYTTGEDCR*
Ga0070689_1006406322	3300005340	Switchgrass Rhizosphere	VRHPSMTTRGTRISFAFAVLIVFCLPKRVECGYPGATCGHAGKWRTTCTDFEIEPLGFYIIELVAGRDIGFAYSAGEDCR*
Ga0070687_1000833854	3300005343	Switchgrass Rhizosphere	VRHPSMSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVAHRDVGFAYTTGEDCR*
Ga0070687_1002371902	3300005343	Switchgrass Rhizosphere	VRHPSMSTRGTHLALLIAFAIAFLLPKRVECTYPGQSCGHAGKYRTICIDYEIEPIGFYALELALGRDLGFAYSSESECR*
Ga0070688_1005173402	3300005365	Switchgrass Rhizosphere	MTTRGTRISFVFAVLIVFCLPKRVECRYPGATCGHAGKWRTTCTDFEIEPLGFYMIELVAGRDIGFAYSAGEDCR*
Ga0070705_1004724992	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVAHRDVGFAYTTGEDCH*
Ga0070694_1002749472	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVAHRDVGFAYTTGEDCR*
Ga0066687_101452042	3300005454	Soil	MRHPSMTTRGTRFAFLFAVLIAFALPKRVECSYPGEACGHAGKYRTTCTSFEIEPLGFYLVELVANRDVGFAYQRGDECR*
Ga0070695_1002581412	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MTTRGRQIAFAFAAVVALALPRRVDCGYPGGTCGHAGKWRTTCTRYEVEPLAFYLIELVAQRDVGFAYTTGDDCR*
Ga0070665_1003744093	3300005548	Switchgrass Rhizosphere	VRHPSMSTRGTHLALLIAFAIAFLLPKRVECTYPGQSCGHAGKYRTICVDYEIEPIGFYALELAFRRDLGFAYSSESECR*
Ga0068859_1013840631	3300005617	Switchgrass Rhizosphere	PSMSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVVQRDVGFAYTTGEDCR*
Ga0068859_1021524702	3300005617	Switchgrass Rhizosphere	MSTRGTHLTFAFAVVIALLLPKHVECGYPGASCNRAGKWRTICSDFEMEPLGIYLVELALRRDVGFAYSTGEDCR*
Ga0074470_101821502	3300005836	Sediment (Intertidal)	LLDRRVLVPQALGVRHPSMSTRGTRIAFLFAAAIAFMLPKWVACGYPGGSCGHAGRWRTTCTDYEIEPLGFYALELLVDHDVGFAYSSGDDCR*
Ga0068870_101652774	3300005840	Miscanthus Rhizosphere	VRHPSMSTRGTRLAFAFAIAVAFLLPKRVDCRYPGATCGHAGRWRTTCTDFEIEPLGFYVIELVAHRDVGFAYSTGDECR*
Ga0068860_1017541241	3300005843	Switchgrass Rhizosphere	VRHPSMTTRGTRISFAFAVLIVFFLPKRVECGYPGATCGHAGKWRTTCTDFEIEPLGFYMIEVIAGRDIGFAYSAGEDCR*
Ga0068862_1004663452	3300005844	Switchgrass Rhizosphere	MTTRGTRISFVFAVLIVFCLPKRVECRYPGATCGHAGKWRATCTDFEIEPLGFYMIELVVGRDIGFAYSAGEDCR*
Ga0068862_1008189271	3300005844	Switchgrass Rhizosphere	MALALAVVIALALPKRIECSYPGARCGHTGRRGMPCTTYQVEPLGFYLIELAVERNVGFAYE
Ga0068862_1015817012	3300005844	Switchgrass Rhizosphere	MSTRGTRLAFAFAIAVAFVLPKRVECGYPGASCGHAGRWRTTCTDVQIEPLGFYVIELVAHRDVGFAYSTGDECR*
Ga0070717_100707096	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VRHPSMSTRGTHLALLIAFTIAFLLPKRVECSFPGQSCGRAGKYRTICIDYEIEPIGFYALELAFGRNIGFAYSTESECR*
Ga0070717_101280092	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRHPSMSTRGTRLAFVFAVVIAGLLPKHVECGYPGATCEHAGRWRTTCTGFEIEPLGFYVIELIARRDVGFAYSAGDDCR*
Ga0070716_1016810712	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	RVPDRSVLVAQAVAMRHPSMSTRGTRVALAIAVAIAFLLPKRVECGYPGGVCGRAGRWRTTCTDYEIEPLGFYAIELIASRNIGFAYGSGEECR*
Ga0079220_118164111	3300006806	Agricultural Soil	MSTRGTRMAFAFAVAIAFLLPKRVECGYPGATCSHTGRWRTTCTDFEIEPLGFYVIELVAHRDVG
Ga0075425_1006163872	3300006854	Populus Rhizosphere	VRHPSMSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVVHRDVGFAYTTGEDCR*
Ga0075434_1009373632	3300006871	Populus Rhizosphere	MSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVVHRDVGFAYTTGEDCR*
Ga0075435_1011723312	3300007076	Populus Rhizosphere	PSMSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVVHRDVGFAYTTGEDCR*
Ga0105249_100580293	3300009553	Switchgrass Rhizosphere	MTTRGTRISFAFAVLIVFFLPKRVECGYPGATCGHAGKWRTTCTDFEIEPLGFYMIEVIAGRDIGFAYSAGEDCR*
Ga0126374_115038822	3300009792	Tropical Forest Soil	MTTRGTRIALVIAVVIGLALPKRVECGYPGATCGHAGKWRTVCTSYQVEPLGFYLIELVAQRD
Ga0126374_117242622	3300009792	Tropical Forest Soil	MTTRGTRIAFAIAVVIGLALPKRVECGYPGATCGHGGKGRTVCTRYEIEPLGFYLIELVAQRDVGFAYESGDDCR*
Ga0126384_123110102	3300010046	Tropical Forest Soil	MTTRGTRIAFAIAVAIGLALPKRVECGYPGATCGHGGKGRTVCTSYEIEPLGFYLIELVAQRDVGFAYESGDDCQ*
Ga0126376_108508282	3300010359	Tropical Forest Soil	MSTRGTRIAFAIAVVIALLLPKRVDCRYPGEICGHAGRWRTTFADYEIEPLGFYVLELALGRDVGFAYSSGEDCR*
Ga0126376_120034811	3300010359	Tropical Forest Soil	MTTRGTRIAFAIAVVIGLALPKRVECGYPGATCSHAGTRRTVCTSYQIEPFGFYLIELAVQRDVGFAYE
Ga0126376_132303092	3300010359	Tropical Forest Soil	MTTRGTRIAFAIAVLIGLALPRRVECGYPGARCDHVGKRQTVCSSYQIEPFGFYLVELVAQRDVGFAYESGDDCR*
Ga0126372_106122582	3300010360	Tropical Forest Soil	MTTRGTRIAFAIAVVIGLALPKRVECGYPGATCGHGGKGRTVCTSYEIEPLGFYLIELVAQRDVGFAYESGDDCR*
Ga0134124_127042401	3300010397	Terrestrial Soil	AVVIGLALPKRVECGYPGATCGHAGRGRTLCTSYEIEPLGFYVIELVAQRDVGFAYESGDDCR*
Ga0134127_101249633	3300010399	Terrestrial Soil	MSTRGTRLAFAFAIAVAFLLPKRVECGYPGATCGHAGRWRTTCTDFEIEPLGFYVIELVAHRDVGFAYSTGDECR*
Ga0134127_122851881	3300010399	Terrestrial Soil	MRHPSMSTRGTRIAFAFAVVIAFLLPKRVECRYPGGTCGHASRWRTTCTDYEIEPLGFYVIELVADRDVGFAYSSGDDCR*
Ga0134122_104815652	3300010400	Terrestrial Soil	MTTRGTRIAAVLGVTLVLLLPKRVDCGYPGATCGHLSRWRTICTSYEVEPVAFYWIELVAHRDIGFAYTAGDECP*
Ga0134122_124946481	3300010400	Terrestrial Soil	MTTRGTRIALLIAVAIGLALPKRVDCSYPGATCNHTGARGRSCTGYQIEPLGFYLIELVAHRDVGFAYETGDDCR
Ga0134121_1000356914	3300010401	Terrestrial Soil	MSTRGTHLTFVFAVIVAFLLPKRVECGYPGATCGHAGKWRTTCTDFEIEPVGFYVIELIAKRNVGFAYSAEEDCR*
Ga0134123_106370592	3300010403	Terrestrial Soil	MTTRGTRISFVFAVLIVFCLPKRVECRYPGATCGHAGKWRTTCTDFEIEPLGFYIIELVAGRDIGFAYSAGEDCR*
Ga0134123_106611851	3300010403	Terrestrial Soil	AVRHPSMSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVVQRDVGFAYTTGEDCR*
Ga0137438_10003219	3300011431	Soil	MSTRGMRITLACVVAAAFLLPKRVECSYPGQACRHAGRWRTTCTDFEIEPFGFYALELAAKRDIGFAYSAGEDCR*
Ga0137451_10048424	3300011438	Soil	MSTRGTRLAFLFAVAIAFLLPKRVECGYPGATCGHAGKWRTTCTDFEIEPIGFYVIELAAKRDIGFAYSAGDDCR*
Ga0137437_10045555	3300011442	Soil	MSTRGTRLAFLFAVAIAFLLPKRVECGYPGATCGHAGKWRTTCTAFEIEPIGFYVIELAAKRDIGFAYSAGDDCR*
Ga0137437_11597262	3300011442	Soil	VRHPSMTTRGTRVAFVLAIAIGLALPKRTECSYPGASCGHAGARRTTCTGYQIEPLGFYLIELVAHRDVGFAYEAGDDCR*
Ga0137334_10500291	3300012179	Soil	AVAVRHPSMSTRGIRIAFVLAVVMVGVLPKRVECSYPGATCGHAGPWRTTCTSFEIFEIEPLGFYLIELAARRDIGFAYSGGDDCR*
Ga0137459_100038913	3300012228	Soil	MSTRGIRIAFVLAVVMVGVLPKRVECSYPGATCGHAGPWRTTCTSFEIFEIEPLGFYLIELAARRDIGFAYSGGDDCR*
Ga0164241_104214062	3300012943	Soil	MTNRGRQLAGIFAILVALGLPKRVECGYPEGSCGHPGIMRQYCKSYEIEPLGFYLIETVAHRDVGFAYTTGEECH*
Ga0126369_119062851	3300012971	Tropical Forest Soil	SMTTRGTRIAFAIAVVIGLALPKRVECGYPGATCGHAGKGRTLCTSYQIEPLGFYLIELVAQRDVGFAYESGDDCR*
Ga0157374_118696112	3300013296	Miscanthus Rhizosphere	MTTRGTRIAFAIAVVIGLALPKRVECGYPGATCGHASKGRTQCTSYQIEPLGFYLIELVAQRDVGFAYESGDDCR*
Ga0157378_101306153	3300013297	Miscanthus Rhizosphere	MSTRGTHVALVIAMIIAFLLPKRVECSYPGETCGHAGRWKTTCTDFEVEPLGLYLIELIAHRNVGFAYSIEDDCR*
Ga0137405_13102523	3300015053	Vadose Zone Soil	MTTRGTRISFAFAVLIVFFLPKRVDCGYPGATCGRAGKWRDLHRLRDRAAGFYMIEVIAGRDIGFAYSAGEDCR*
Ga0137405_13102525	3300015053	Vadose Zone Soil	MTTRGTRISFAFAVLIVFFLPKRVDCGYPGATCGRAGKWRTTCTDFEIEPLGFYMIEVIAGRDIGFAYSAGEDCR*
Ga0193744_10281394	3300019874	Soil	MTTRGTRVALVLAVVIGLALPKRTECSYPGATCGHAGARRTTCTGYQIEPLGFYLIELVAHRDVGFAYEVGDDCR
Ga0193712_10368062	3300019880	Soil	MRHPSMSTRGMRITFAFVIATAFLLPKRVECSYPGATCGHAGRWRMTCTDFEIEPFGFYVIELAARRDIGFAYSAGEDCR
Ga0210380_100292922	3300021082	Groundwater Sediment	MSTRGTRLAFLFAVAIAFLLPKRVECGYPGATCGHAGKWRTTCTDFEIEPIGFYVIELVAKRDIGFAYSAGDDCR
Ga0193699_102095332	3300021363	Soil	MRHPSMSTRGTHLAFAIAVVVALLLPKRVDCGYPGATCGHQGRWRTICTDFEIEPLGLYVIELIARRDVGFAYTRGDDCH
Ga0247784_10180123	3300023270	Plant Litter	MTTRGTRIAFAIAAVIFLALPKRVECHFPGQTCRHPGPWRTTCTDFEVEPLGFYLIEQVAHRDVGFAYARGDDCR
Ga0207662_100239052	3300025918	Switchgrass Rhizosphere	VRHPSMSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRMTCTDFEIEPLGFYVIELVAHRDVGFAYTTGEDCR
Ga0207662_112085411	3300025918	Switchgrass Rhizosphere	VRHPSMSTRGTHLALLIAFAIAFLLPKRVECTYPGQSCGHAGKYRTICVDYEIEPIGFYALELALGRDLGFAYSSESECR
Ga0207670_100806264	3300025936	Switchgrass Rhizosphere	MTTRGTRISFAFAVLIVFCLPKRVECGYPGATCGHAGKWRTTCTDFEIEPLGFYIIELVAGRDIGFAYSAGEDCR
Ga0207670_111542162	3300025936	Switchgrass Rhizosphere	VRHPSMSTRGTRVAFAFAIVVALLLPKRVECGYPGATCGHAGRWRTTCTDFEIEPLGFYVIELVAHRDVGFAYTT
Ga0207670_117119661	3300025936	Switchgrass Rhizosphere	MRHPSMTTRGTRIAFAIAVVIGLALPKRVECGYPGATCGHAGRGRTLCTSYEIEPLGFYVIELVAQRDVGFAYES
Ga0207689_115844511	3300025942	Miscanthus Rhizosphere	MRHPSMSTRGTRMAFALAVAIAFLLPKRVECRYPGATCSHPGRWRTTCTDYEIEPLGFYVIELVAHRDVGFAYSSGDDCR
Ga0207712_110590193	3300025961	Switchgrass Rhizosphere	VRHPSMTTRGTRISFAFAVLIVFFLPKRVECGYPGATCGHAGKWRTTCTDFEIEPLGFYMIEVIAGRDIGFAYSAGEDCR
Ga0207703_121326392	3300026035	Switchgrass Rhizosphere	MTTRGTRMALAIAVLIGLALPKRVECGYPGARCGRAGKWQTVCSSYQIEPFGFYLVELVAQRDVGFAYESGDDCR
Ga0207708_103736393	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VRHPSMSTRGTRLAFAFAIAVAFLLPKRVDCRYPGATCGHAGRWRTTCTDFEIEPLGFYVIELVAHRDVGFAYSTGDECR
Ga0207641_123754162	3300026088	Switchgrass Rhizosphere	MRHPSMTTRGTHLAIAIAVVIAFLLPKRVDCGYPGATCGHVGRWKAICTDYEIEPVGFYVIELAVKRDVGFAYSTDSDCR
Ga0268266_116638312	3300028379	Switchgrass Rhizosphere	VRHPSMSTRGTHLALLIAFAIAFLLPKRVECTYPGQSCGHAGKYRTICVDYEIEPIGFYALELAFRRDLGFAYSSES
Ga0268265_120669642	3300028380	Switchgrass Rhizosphere	MTTRGTRISFVFAVLIVFCLPKRVECRYPGASCGHAGKWRATCTDFEIEPLGFYMIELVVGRDIGFAYSAGEDC
Ga0302264_10056433	3300028732	Fen	MRHPSMSTRGTRVAFAFAVVIALLLPKRIDCGDPGATCGRAGRWRTTCTDFEVEPLGIYLIELALHRDVGFAYSSGDDCR
Ga0307517_103152852	3300028786	Ectomycorrhiza	MRHPSMTTRGTRVALATAIAIALLLPKRVECGYPGAACGHAGPWKTTCRGVEIEPMGFYLIELATHRNVGFAYSSEDDCQ
Ga0302259_10040905	3300028861	Fen	LIAELLTMRHPSMSTRGTRVAFAFAVVIALLLPKRIDCGDPGATCGRAGRWRTTCTDFEVEPLGIYLIELALHRDVGFAYSSGDDCR
Ga0302291_100321754	3300028865	Fen	VAFAFAVVIALLLPKRIDCGDPGATCGRAGRWRTTCTDFEVEPLGIYLIELALHRDVGFAYSSGDDCR
Ga0302291_103468042	3300028865	Fen	MRHPSMSTRGTHLALAIAVVIALLLPKRVECGFPGAVGAACRHAGRGQMICTDFEVEPLGLYVIELAVHRNVGFAYSSGNDCP
Ga0302163_102532511	3300028868	Fen	RARGDGEAGSCGILIAELLTMRHPSMSTRGTRVAFAFAVVIALLLPKRIDCGDPGATCGRAGRWRTTCTDFEVEPLGIYLIELALHRDVGFAYSSGDDCR
Ga0302175_101820191	3300030014	Fen	GIERDERRARGDGEAGSCGILIAELLTMRHPSMSTRGTRVAFAFAVVIALLLPKRIDCGDPGATCGRAGRWRTTCTDFEVEPLGIYLIELALHRDVGFAYSSGDDCR
Ga0302273_11985011	3300030048	Bog	MRHPSMSTRGTHVALVIAMIIAFLLPKRVECSYPGETCGHAGRWRTTCTDFEIEPLGLYVIELIAHRNVGFAYSTGDDCR
Ga0311349_103494234	3300030294	Fen	MSTRGTRIAFLFAVAIAFLLPKWVACGHPGGSCGRAGRWRTTCTDYEIEPLGFYAIELLVGRDVGFAYSSGEDCR
Ga0302323_1025923371	3300031232	Fen	VRHPSMSTRGTRITFAFAIAIAFFLPKRVECGYPGATCGHAGRWRTTCTDFEVEPFGFYVIELAAKRDIGFAYSAGDDCR
Ga0302323_1028004222	3300031232	Fen	MSTRGMRITFAFAIAVAFFLPRRVECRYPGASCGHAGRWNTTCTDFEIEPFGFYVIELAAKRDIGFAYSTGDDCR
Ga0265332_100464932	3300031238	Rhizosphere	MRHPSMTTRGTRIAFAIAVLIGLALPKRVECGYPGGTCGHAGKWRTVCTRYEIEPLGFYLVEIVAHRDVGFAYEAGDDCR
Ga0307513_100045063	3300031456	Ectomycorrhiza	MRHPSMSTRGTHVAVMIAIAIAFFLPKRVECSFPGQSCHHAGKYRTLCTDYEIEPLGFYAIELVAKRDIGFSYSSESDCR
Ga0307509_101673884	3300031507	Ectomycorrhiza	VRHPSMTTRGTRIAFLLAIAIGLALPKRTECSYPGATCGHAGARRTTCTSYQIEPLGFYLIELVAHRDVGFAYEAGDDCR
Ga0307509_104237121	3300031507	Ectomycorrhiza	MRHPSMTTRGTHLALAIAVVIAFLLPKRVDCGYPGATCGHVGRWKTICTDYEIEPLGFYVIELAVKRNVGFAYATDADCH
Ga0307509_110053382	3300031507	Ectomycorrhiza	MRHPSMTTRGTRVAFAIAIAIALLLPKRVECGYPDAVCGRAGPWRTTCRAVEIEPMGFYLIELATHRNIGFAYSSEDDCQ
Ga0307508_100507874	3300031616	Ectomycorrhiza	MRHPSMSTRGTQIAFAIAVVIALLLPKRVDCGFPGATCGHAGRWRTTCTDFEIEPLGFYVIELIARRDVGFAYSSGDDCQ
Ga0307508_107545692	3300031616	Ectomycorrhiza	MSTRGTHVAVAIAVIIAFLLPKRVECGYPDAADATNGPTSRACRHAGRGQAVCTDFEVEPLGLYLIELVVRRNVGFAYSSGDDCS
Ga0302321_1020354341	3300031726	Fen	MSTRGTHVALAIAMIIAFLLPKRVECSYPGETCGHAGRWKTTCTDFEIEPLGLYLIELIAHR
Ga0302321_1023012051	3300031726	Fen	MRHPSMSTRGTHLALAIAVVIALLLPKRVECGFPGAVGAACRHAGRGQTICTDFEVEPLGLYVIELAVHRNVGFAYSSGNDCP
Ga0307516_103726492	3300031730	Ectomycorrhiza	MRHPSMSTRGTRVAFAFAVLIALLLPKRIECGYPGATCGHAGRWRTTCTDFEVEPLGIYLIELALHRDVGFAYSSGDDCR
Ga0302322_1002310324	3300031902	Fen	MRHPSMSTRGTHVALVIAMIIAFLLPKRVECSYPGETCGHAGRWRTTCTDFEIEPLGLYVIELIAHRNVGFAYSTGD
Ga0308175_10000023612	3300031938	Soil	VRHPGMTTRGTRISFAFAVLIVFFLPKRVDCGYPGATCGRAGKWRTTCTDFEIEPLGFYLIEVIAGRDIGFAYSAGEDCR
Ga0308176_113846981	3300031996	Soil	FLFAVLIACALPKRVECSYPGQSCGHAGRHRETCTSFEIEPLGFYLIELVAHRDVGFAYQTGDECR
Ga0307471_1006978602	3300032180	Hardwood Forest Soil	MRHPSMTTRGTRIAFAIAVVIGLALPKRVECGYPGATCGHTGKGRTLCTSYEIEPLGFYLIELVAQRDVGFAYESGDDCR
Ga0316617_1001551521	3300033557	Soil	VRHPSMSTRGTRIAFLIAAVLAFLLPRWVPCGYPGATCARAGHWRTTCTAYEVEPIGFYALELLAERDVGFAYASGEECR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103731

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with PDB biological assemblies

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences