Metagenome Family F103781

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103781
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	103 residues
Representative Sequence	VACRPDETPAQWCARATGDYIAALAAFQIEWQRLSMVSLSLLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR
Number of Associated Samples	67
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	61.00 %
% of genes near scaffold ends (potentially truncated)	37.62 %
% of genes from short scaffolds (< 2000 bps)	95.05 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (78.218 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.752 % of family members)
Environment Ontology (ENVO)	Unclassified (57.426 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.337 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.71% β-sheet: 0.00% Coil/Unstructured: 47.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00196	GerE	13.86
PF09924	LPG_synthase_C	2.97
PF09851	SHOCT	1.98
PF07690	MFS_1	1.98
PF11239	DUF3040	1.98
PF00072	Response_reg	0.99
PF00881	Nitroreductase	0.99
PF13396	PLDc_N	0.99
PF14492	EFG_III	0.99
PF03030	H_PPase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3808	Na+ or H+-translocating membrane pyrophosphatase	Energy production and conversion [C]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
All Organisms	root	All Organisms	21.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
cellular organisms	root	All Organisms → cellular organisms	21.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.80 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	16.83 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	16.83 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	1.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.85 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	1.98 %
Halobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	1.98 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Haloarculaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae	1.98 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	1.98 %
Dermabacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Halosimplex	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halosimplex	1.98 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	1.98 %
Brachybacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Halosimplex carlsbadense	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halosimplex → Halosimplex carlsbadense	1.98 %
Nakamurella deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	0.99 %
unclassified Brachybacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → unclassified Brachybacterium	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.22 %
Halosimplex carlsbadense	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halosimplex → Halosimplex carlsbadense	1.98 %
Brachybacterium sp. SW0106-09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → unclassified Brachybacterium → Brachybacterium sp. SW0106-09	0.99 %
Nakamurella deserti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908008\|FWIREl_GJ4R3DH02ICB3M	Not Available	503	Open in IMG/M
3300005337\|Ga0070682_100663070	Not Available	832	Open in IMG/M
3300005337\|Ga0070682_101077647	Not Available	671	Open in IMG/M
3300005337\|Ga0070682_101551709	Not Available	571	Open in IMG/M
3300005338\|Ga0068868_100161055	Not Available	1853	Open in IMG/M
3300005356\|Ga0070674_100173999	Not Available	1644	Open in IMG/M
3300005439\|Ga0070711_100908439	Not Available	752	Open in IMG/M
3300005455\|Ga0070663_100641801	Not Available	897	Open in IMG/M
3300005456\|Ga0070678_100223560	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300005466\|Ga0070685_10885399	Not Available	663	Open in IMG/M
3300005526\|Ga0073909_10590004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	547	Open in IMG/M
3300005539\|Ga0068853_101717651	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halosimplex → Halosimplex carlsbadense	608	Open in IMG/M
3300005616\|Ga0068852_101202206	Not Available	779	Open in IMG/M
3300005616\|Ga0068852_102585937	Not Available	527	Open in IMG/M
3300005618\|Ga0068864_101115398	Not Available	785	Open in IMG/M
3300005834\|Ga0068851_10870580	Not Available	563	Open in IMG/M
3300005840\|Ga0068870_10715024	Not Available	692	Open in IMG/M
3300005841\|Ga0068863_100967933	Not Available	853	Open in IMG/M
3300005841\|Ga0068863_101339673	Not Available	723	Open in IMG/M
3300005842\|Ga0068858_101057509	Not Available	796	Open in IMG/M
3300006050\|Ga0075028_100802411	Not Available	574	Open in IMG/M
3300006173\|Ga0070716_100372785	Not Available	1018	Open in IMG/M
3300006354\|Ga0075021_10861998	Not Available	587	Open in IMG/M
3300006358\|Ga0068871_101014360	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Halosimplex → Halosimplex carlsbadense	773	Open in IMG/M
3300006358\|Ga0068871_101983549	Not Available	554	Open in IMG/M
3300006755\|Ga0079222_12043094	Not Available	565	Open in IMG/M
3300006881\|Ga0068865_101253935	Not Available	658	Open in IMG/M
3300009098\|Ga0105245_10146223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2230	Open in IMG/M
3300009098\|Ga0105245_10293416	Not Available	1593	Open in IMG/M
3300009148\|Ga0105243_10221743	Not Available	1672	Open in IMG/M
3300009148\|Ga0105243_10474685	Not Available	1179	Open in IMG/M
3300009176\|Ga0105242_12977814	Not Available	524	Open in IMG/M
3300009551\|Ga0105238_11238037	Not Available	771	Open in IMG/M
3300009551\|Ga0105238_12010736	Not Available	612	Open in IMG/M
3300010375\|Ga0105239_11266046	Not Available	850	Open in IMG/M
3300011119\|Ga0105246_10672843	Not Available	904	Open in IMG/M
3300011119\|Ga0105246_12440270	Not Available	514	Open in IMG/M
3300012951\|Ga0164300_10587132	Not Available	655	Open in IMG/M
3300012955\|Ga0164298_10164515	Not Available	1261	Open in IMG/M
3300012955\|Ga0164298_10935349	Not Available	634	Open in IMG/M
3300012957\|Ga0164303_10146062	Not Available	1245	Open in IMG/M
3300012958\|Ga0164299_10261485	Not Available	1041	Open in IMG/M
3300012961\|Ga0164302_10200212	Not Available	1227	Open in IMG/M
3300012961\|Ga0164302_10792949	Not Available	714	Open in IMG/M
3300012984\|Ga0164309_10073399	Not Available	2072	Open in IMG/M
3300012984\|Ga0164309_10110253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1757	Open in IMG/M
3300012984\|Ga0164309_10438374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	985	Open in IMG/M
3300012984\|Ga0164309_11355786	Not Available	604	Open in IMG/M
3300012985\|Ga0164308_10388387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermabacteraceae → Brachybacterium → unclassified Brachybacterium → Brachybacterium sp. SW0106-09	1138	Open in IMG/M
3300012985\|Ga0164308_10471388	Not Available	1044	Open in IMG/M
3300012985\|Ga0164308_10657226	Not Available	899	Open in IMG/M
3300012986\|Ga0164304_10492214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	893	Open in IMG/M
3300012986\|Ga0164304_10844753	Not Available	711	Open in IMG/M
3300012987\|Ga0164307_10089157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1898	Open in IMG/M
3300012987\|Ga0164307_10259762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1217	Open in IMG/M
3300012987\|Ga0164307_11571886	Not Available	557	Open in IMG/M
3300012988\|Ga0164306_10419396	Not Available	1010	Open in IMG/M
3300012988\|Ga0164306_10454658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	975	Open in IMG/M
3300012989\|Ga0164305_10298176	Not Available	1189	Open in IMG/M
3300012989\|Ga0164305_10472526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	979	Open in IMG/M
3300013296\|Ga0157374_12387837	Not Available	556	Open in IMG/M
3300013297\|Ga0157378_10202598	All Organisms → cellular organisms → Bacteria → Acidobacteria	1877	Open in IMG/M
3300013297\|Ga0157378_12687524	Not Available	550	Open in IMG/M
3300013306\|Ga0163162_10242018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1935	Open in IMG/M
3300013307\|Ga0157372_11515548	Not Available	772	Open in IMG/M
3300013308\|Ga0157375_10523663	Not Available	1348	Open in IMG/M
3300013308\|Ga0157375_11648415	Not Available	759	Open in IMG/M
3300014325\|Ga0163163_11040553	Not Available	882	Open in IMG/M
3300014325\|Ga0163163_11261217	Not Available	801	Open in IMG/M
3300014745\|Ga0157377_11267802	Not Available	574	Open in IMG/M
3300014968\|Ga0157379_12464390	Not Available	520	Open in IMG/M
3300017965\|Ga0190266_10201109	Not Available	953	Open in IMG/M
3300018476\|Ga0190274_10399918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1331	Open in IMG/M
3300025901\|Ga0207688_10651451	Not Available	665	Open in IMG/M
3300025901\|Ga0207688_11016090	Not Available	524	Open in IMG/M
3300025925\|Ga0207650_10660367	Not Available	882	Open in IMG/M
3300025926\|Ga0207659_11916904	Not Available	502	Open in IMG/M
3300025927\|Ga0207687_10075956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2412	Open in IMG/M
3300025927\|Ga0207687_10094740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2185	Open in IMG/M
3300025927\|Ga0207687_10305761	Not Available	1282	Open in IMG/M
3300025934\|Ga0207686_10141867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1662	Open in IMG/M
3300025934\|Ga0207686_10547025	Not Available	905	Open in IMG/M
3300025935\|Ga0207709_10149423	Not Available	1616	Open in IMG/M
3300025942\|Ga0207689_10800835	Not Available	795	Open in IMG/M
3300025986\|Ga0207658_11015465	Not Available	757	Open in IMG/M
3300026023\|Ga0207677_11345849	Not Available	657	Open in IMG/M
3300026023\|Ga0207677_12223391	Not Available	510	Open in IMG/M
3300026035\|Ga0207703_10434845	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300026035\|Ga0207703_11404711	Not Available	671	Open in IMG/M
3300026067\|Ga0207678_10630934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	941	Open in IMG/M
3300026088\|Ga0207641_10757764	Not Available	959	Open in IMG/M
3300026095\|Ga0207676_11361210	Not Available	705	Open in IMG/M
3300026121\|Ga0207683_10333849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1390	Open in IMG/M
3300026121\|Ga0207683_11000589	Not Available	776	Open in IMG/M
3300027894\|Ga0209068_10120255	Not Available	1401	Open in IMG/M
3300028597\|Ga0247820_10366186	Not Available	958	Open in IMG/M
3300028597\|Ga0247820_10576891	Not Available	774	Open in IMG/M
3300028597\|Ga0247820_10763612	Not Available	678	Open in IMG/M
3300028597\|Ga0247820_11209233	Not Available	546	Open in IMG/M
3300028608\|Ga0247819_10993955	Not Available	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.42%
Environmental	Environmental	41.58%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.42%
Terrestrial	Environmental → Terrestrial	38.61%
Aquatic	Environmental → Aquatic	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.75%
Roots	Host-Associated → Plants → Roots	3.96%
Sediment	Environmental → Aquatic → Sediment	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	21.78%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	21.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	12.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.95%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908008	Soil microbial communities from sample at FACE Site Metagenome WIR_Elev2	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIREl_03978530	2124908008	Soil	VNCRSDETPAARCARAIGDYVTALAAFQIERQRLSTHNRSLLTAGYPTLDNGFDGAIDALEDADNERSDAIAELDRESLVALRPAPRVKWRHGGRFGIDHD
Ga0070682_1006630702	3300005337	Corn Rhizosphere	MMSGVTRKMDETPAEWCARATGDYVAAMMAFQIEWQRLAMVSMSRLAAGYPTLDDGYDSALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRHAGRFGIYHE*
Ga0070682_1010776471	3300005337	Corn Rhizosphere	MASRPGETPTQWCARATGDYVAALAAFQIEWQRLALVSLSLVTAGYPTLDDGYDGAMDSVEDADNERSEAAAELNRQLLVAFRPAPRIKWRHGGRFGIHHERDPGRSGEPPVGPVEPETKHCH*
Ga0070682_1015517091	3300005337	Corn Rhizosphere	MSRAPGETPAQWCTRATGEYVIAFAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0068868_1001610552	3300005338	Miscanthus Rhizosphere	MMRRVSYQPGETAAQWYARATGDYVAALAAVQIEWQRLAMVSLSLLAAGYPTLDDAYDSAMDSLEDADNERSEAITELDRESSMIFRSPPRVRWTDGGRFGIYHE*
Ga0070674_1001739992	3300005356	Miscanthus Rhizosphere	MMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRGGRSGIYPE*
Ga0070711_1009084391	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MACRPDETPAQWCARATGDYVAAMAAFQIEWQRLSMVSLSLLAAGYPTLDDGYDGAMDSLEDADNERSEAATELERQTMLALRPARRVKWRHGGKIGFYPE*
Ga0070663_1006418011	3300005455	Corn Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGGRFALYRE*
Ga0070678_1002235603	3300005456	Miscanthus Rhizosphere	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVKWRHGSRFGVYRAHKVWCGGCSVGG*
Ga0070685_108853991	3300005466	Switchgrass Rhizosphere	MSRAPGETPAQWFTRATGEYALAFAAFQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELTRESVAAFRAAPR
Ga0073909_105900041	3300005526	Surface Soil	MISETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGAMDSLEDADNERSEAAAELDRESLAAFRPAPRVKWRHGGRFGIYHD*
Ga0068853_1017176511	3300005539	Corn Rhizosphere	MMRRVSYQPGETAAQWYARATGDYVAALAAVQIEWQRLAMVSRSLLAAGYPTLDDAYDSAMDSLEDADNERSEAITELDRESSMIFRSPPRVRWTDGGRFGIYHE*
Ga0068852_1012022062	3300005616	Corn Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGAMDSLEDADNERSEAAAELDRESLAAFRPAPRVKWRHGGRFGIYHD*
Ga0068852_1025859371	3300005616	Corn Rhizosphere	AVCTSWVSGLQDRPKWVDRRIWAMMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRGGRSGIYPE*
Ga0068864_1011153983	3300005618	Switchgrass Rhizosphere	MSGVTRKMDETPAEWCARATGDYVAAMMAFQIEWQRLAMVSMSRLAAGYPTLDDGYDSALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRHAGRFGIYHE*
Ga0068851_108705801	3300005834	Corn Rhizosphere	DYIAAMAAFHIEWHRLSMVSLSLLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGGRFALYRE*
Ga0068870_107150242	3300005840	Miscanthus Rhizosphere	RATGDYVAALAAVQIEWQRLAMVSLSLLAAGYPTLDDAYDSAMDSLEDADNERSEAITELDRESSMIFRSPPRVRWTDGGRFGIYHE*
Ga0068863_1009679332	3300005841	Switchgrass Rhizosphere	MMSGVTRKMDETPAEWCARATGDYVAAMAAFQIEWQRLAVVSLSLLAAGYPTMDDGYDGALDSLEDADNERSEAVTELDRESLAAFRPAPRIRWRHAGRFGVYHE*
Ga0068863_1013396732	3300005841	Switchgrass Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGAMDSLEDADHERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0068858_1010575092	3300005842	Switchgrass Rhizosphere	PAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGGRFALYRE*
Ga0075028_1008024111	3300006050	Watersheds	MMSGVTRKMNETPSQWCARATGDYVAALAAFQIEWQRLAMVNMSLLAVGYPTLDDGYDGALDSLEDADNERSEAATELDRESLAAFRPAPHITWR
Ga0070716_1003727851	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSRAPGETPAQWCTRATGEYVVAFAAFQVEWHRLSVVGWSALAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0075021_108619981	3300006354	Watersheds	MACMSQQPGESPAQWCSRATREYVAAVVAFQVEWQRLSTAGLSLLVAGYPTLDDGYDGAMDSLDDADNERTEATKELDRESLAAFRPAPRIKWRHGARFGVYHD*
Ga0068871_1010143601	3300006358	Miscanthus Rhizosphere	VCPNQRMMRRVSYQPGETAAQWYARATGDYVAALAAVQIEWQRLAMVSLSLLAAGYPTLDDAYDSAMDSLEDADNERSEAITELDRESSMIFRSAPRVRWTDGGRFGIYHE*
Ga0068871_1019835491	3300006358	Miscanthus Rhizosphere	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELNRESGAAFRAAPRVKWRHGSRFGVYPSA*
Ga0079222_120430941	3300006755	Agricultural Soil	VACRADETPAQWCARATGDYVAAMAAFQIEWQRLSMVSLTLLAAGYPTLDDGYDGALDSLEDADHERSEAVTELDRERLALFRPAPRVKWRHGGRIGFYRE*
Ga0068865_1012539351	3300006881	Miscanthus Rhizosphere	VACRPDETPAQWCARATGDYIAALAAFQIEWQRLSMVSLSLLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0105245_101462232	3300009098	Miscanthus Rhizosphere	MSRAPGETPAQWFTRATGEYALAFAAFQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0105245_102934162	3300009098	Miscanthus Rhizosphere	ATGDYVTALAVLQVERRRLSTVSPPALAGGYPTSDDGYDGAMDSLEDADNERSEAAAELDRESLAAFRPAPRVKWRHGGRFGIYHD*
Ga0105243_102217434	3300009148	Miscanthus Rhizosphere	RIWAMMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRGGRSGIYPE*
Ga0105243_104746852	3300009148	Miscanthus Rhizosphere	MSRAPGETPAQWCTRATGEYVVAFAAFQVEWHRLSVVGWSALAAGYPTLDDDYDGAIDSLEEADSERTDAVNEMDRESVAAFRAAPRVKWRHGSRFGVYPSA*
Ga0105242_129778141	3300009176	Miscanthus Rhizosphere	WTARASGEYVVAMAAFQVEWQRLAVAGWSVLSAGYPTLDDAYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0105238_112380371	3300009551	Corn Rhizosphere	MMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRG
Ga0105238_120107362	3300009551	Corn Rhizosphere	ATGDYVAALGAFQIQWQRLAIANMSLLDAGYPTLDDGYDGALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRHAGRFGIYHE*
Ga0105239_112660461	3300010375	Corn Rhizosphere	MMRRVSYQPGETAAQWYARATGDYVAALAAVQIEWQRLAMVSMSRLAAGYPTLDDGYDSALDSLEDADNERSEAVTELDRESLAAFRPAPRIKWRHAGRFGIYHE*
Ga0105246_106728431	3300011119	Miscanthus Rhizosphere	WVDRRIWAMMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRSGRSGIYPE*
Ga0105246_124402701	3300011119	Miscanthus Rhizosphere	MDETPAEWCARATGDYVAAMAAFQIEWQRLAVVSLSLLAAGYPTMDDGYDGALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRHAGRFGIYHE*
Ga0164300_105871321	3300012951	Soil	MACRPDETPAQWCARATGDYVAAVAAFQIEWQRLSMVSLSLIAAGYPTLDDGYDGAMDSLEDADHERSEAATELHRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0164298_101645151	3300012955	Soil	MSRAPGETPAQWCTRAAGEYVVAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0164298_109353491	3300012955	Soil	ERAAPARSRLKGLSSGFKEMMLSVACRPHETPAQWCARATGEYVAAVAAFQIEWQRLSMVSLSLIAAGYPTLDDGYDGAMDSLEDADHERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0164303_101460622	3300012957	Soil	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0164299_102614852	3300012958	Soil	MMLSVACRPHETPAQWCARATGDYVAAVAAFQIEWQRLSMVSLSLIAAGYPTLDDGYDGAMDSLEDADHERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0164302_102002121	3300012961	Soil	MMAGVTYRPGETPAQWFARATGDYVTALAAFQIEWQRLSIANLSLLAAGYPTLDNGYDAAIDSLEDADNERSEAVTERDRESLVAFRPAPRIKWRNGERFGIYHD
Ga0164302_107929491	3300012961	Soil	MSRAPGETPAQWFTRATGEYALAFAACQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELNRESGAAFRAAPRVKWRRGSKFGVYPNE*
Ga0164309_100733995	3300012984	Soil	MMVRVSCIPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRSGRSGIYPE*
Ga0164309_101102531	3300012984	Soil	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWPRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0164309_104383741	3300012984	Soil	MSRAPGETPAQWCTRAAGEYVVAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVATFRAAPRVKWRHGSRFGVYPSA*
Ga0164309_113557861	3300012984	Soil	MSRAPGETPAQWFTRATGEYALAFAAFQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELTRESVAAFRAAPRVKWRRGSKFGVYPNE*
Ga0164308_103883871	3300012985	Soil	VACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRVKWRHGGRFALYRE*
Ga0164308_104713882	3300012985	Soil	MMLSVACRPDETPAQRCARATGDFVAAVAAFQIEWQRLSMVSLSLLAAGYPTLDDGYDGAMDSLEDADNERSEAATELERQTMLALRPARRVKWRHGGKIGFYPE*
Ga0164308_106572262	3300012985	Soil	LRLKGLSSGFKEMMLSVACRPHETPAQWCARATGDYVAAVAAFQIEWQRLSMVSLSLIAAGYPTLDDGYDGAMDSLEDADHERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0164304_104922142	3300012986	Soil	MDETPAEWCARATGDYVAAMMAFQIEWQRLAMVSMSRLAAGYPTLDDGYDSALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRNGERFGIYHD*
Ga0164304_108447531	3300012986	Soil	FPPRFKETMLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGGRFALYRE*
Ga0164307_100891573	3300012987	Soil	MMLSVACRPHETPAQWCARATGDYVAAVAAFQIEWQRLSMVSLSLIAAGYPTLDDGYDGAMDSLEDADNERSEAATELERQTMLALRPARRVKWRHGGKIGFYPE*
Ga0164307_102597622	3300012987	Soil	MSRAPGETPAQWCTRAAGEYVVAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGV*
Ga0164307_115718861	3300012987	Soil	MSRAPDETPSQWCTRATGEYVLASAAFQVEWQRLSMVGWSMLAAGYPTLDDNYDGAMDCLEEADSERTDAANELDRESVAAFRAAHG*
Ga0164306_104193961	3300012988	Soil	MDETPAEWCARATGDYVAAMMAFQIEWQRLAMVSMSRLAAGYPTLDDGYDSALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRHAGRFGIYHE*
Ga0164306_104546582	3300012988	Soil	MLSVACRPHETPAQWCARATGDYVAAVAAFQIEWQRLSMVSLSLIAAGYPTLDDGYDGAMDSLEDADHERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0164305_102981761	3300012989	Soil	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELNRESGAAFRAAPRVKWRRGSKFGVYPNE*
Ga0164305_104725262	3300012989	Soil	PRLKGPSSGFKEMMLSVACRPHETPAQWCARATGDYVAAVAAFQIEWQRLSMVSLSLIAAGYPTLDDGYDGAMDSLEDADHERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR*
Ga0157374_123878372	3300013296	Miscanthus Rhizosphere	VACRPDETPAQWCARATGDYIAALAAFQIEWQRLSMVSLSLLAAGYPTLDDGYDGALDSLEDANNERSEAATELERQTMLALRPARRVKWRHGGKIGFYPE*
Ga0157378_102025982	3300013297	Miscanthus Rhizosphere	MSRAPDETPSQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA*
Ga0157378_126875241	3300013297	Miscanthus Rhizosphere	CTSWVSGLQDRPKWVDRRIWAMMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRGGRSGIYPE*
Ga0163162_102420182	3300013306	Switchgrass Rhizosphere	MMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSVVAVSLIKKRYPTLDEGYHDAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRGGRSGIYPE*
Ga0157372_115155482	3300013307	Corn Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELERQTMLALRPARRVKWRHGGRFGLYRE*
Ga0157375_105236631	3300013308	Miscanthus Rhizosphere	MKAQMASRPGETPTQWCARATGDYVAALAAFQIEWQRLALVSLSLVTAGYPTLDDGYDGAMDSVEDADNERSEAAAELNRQLLVAFRPAPRIKWRHGGRFGIHHERDPGRSGEPPVGPVQGGGFR
Ga0157375_116484151	3300013308	Miscanthus Rhizosphere	MSRALDETPAQWCTRATGEYVIAFAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPRVKWRYGSRFGVYPSA
Ga0163163_110405531	3300014325	Switchgrass Rhizosphere	MSRAPGETPAQWFTRATGEYALAFAAFQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELNRESGAAFRAAPRVKWRRGSKFGVYPNE*
Ga0163163_112612171	3300014325	Switchgrass Rhizosphere	TGRDSRTQWCARATGDYIAAMAAFHIEWHRLSMVSLSLLAAGYPTLDDGDDGALDSLEDADNERSEAATELDRETLATFRPAPRVKW*
Ga0157377_112678021	3300014745	Miscanthus Rhizosphere	DDAFVACRPDETPAQWCARATGDYVAAVAAFHIEWQRMSMVSLSLLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRVKWRHGGRFALYRE*
Ga0157379_124643901	3300014968	Switchgrass Rhizosphere	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELTRESVAAFRAAPRVKWRRGSKFGVYPNE*
Ga0190266_102011092	3300017965	Soil	MSRAPGETPAQWCTRATGEYVVAFAAFQVERHRLSVGGSSVLAAGYPTLDDDYDGAIDSLEEADSERTDAVNELDRESVAAFRAAPRVKWRHGSRFGVYPSA
Ga0190274_103999182	3300018476	Soil	MSSRPGETAAEWCARATGDYVAALAAFQIEWQRLAVVSLSTLTAGYPTSDDSYDGAMDFLEDADHERNEAIAELDRESSIGLRPGPRSGRRNGGRFGTSAE
Ga0207688_106514512	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFR
Ga0207688_110160902	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MMAGVTYRPGETPAQWFARATGDYVAALAAFQIEWQRLAVVSLSTLTAGYPTSDDSYDGAMDFLEDADHERNEAIAELDRESSIGLRPGPRSGRRNGG
Ga0207650_106603671	3300025925	Switchgrass Rhizosphere	RVSYQPGETAAQWYARATGDYVAALAAVQIEWQRLAMVSLSLLAAGYPTLDDAYDSAMDSLEDADNERSEAITELDRESSMIFRSPPRVRWTDGGRFGIYHE
Ga0207659_119169041	3300025926	Miscanthus Rhizosphere	PTQWCARATGDYVAALAAFQIEWQRLALVSLSLVTAGYPTLDDGYDGAMDSVEDADNERSEAAAELNRQLLVAFRPAPRIKWRHGGRFGIHHERDPGRSGEPPVGPVEPETKHCH
Ga0207687_100759563	3300025927	Miscanthus Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGGRFALYRE
Ga0207687_100947402	3300025927	Miscanthus Rhizosphere	MMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRGGRSGIYPE
Ga0207687_103057612	3300025927	Miscanthus Rhizosphere	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAIDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA
Ga0207686_101418672	3300025934	Miscanthus Rhizosphere	MMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAA
Ga0207686_105470252	3300025934	Miscanthus Rhizosphere	MSRAPGETPAQWCTRATGEYVVAFAAFQVEWHRLSVVGWSALAAGYPTLDDDYDGAIDSLEEADSERTDAVNELDRESVAAFRAAPRVRWRHGSRFGVYPSA
Ga0207709_101494231	3300025935	Miscanthus Rhizosphere	RIWAMMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRTSTIAFRAAPRVKWKRGGRSGIYPE
Ga0207689_108008351	3300025942	Miscanthus Rhizosphere	MMRRVSYQPGETAAQWYARATGDYVAALAAVQIEWQRLAMVSRSLLAAGYPTLDDAYDSAMDSLEDADNERSEAITELDRESSMIFRSPPRVRWTDG
Ga0207658_110154651	3300025986	Switchgrass Rhizosphere	MMVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGG
Ga0207677_113458492	3300026023	Miscanthus Rhizosphere	MSRAPGETPAQWFTRATGEYALAFAAFQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELNRESGAAFRAAPRVKWRRGTQIGAEFL
Ga0207677_122233911	3300026023	Miscanthus Rhizosphere	MSGVTRKMDETPAEWCARATGDYVAAMMAFQIEWQRLAMVSISRLAAGYPTLDDGYDSALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRHAGRVG
Ga0207703_104348451	3300026035	Switchgrass Rhizosphere	PAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGGRFALYRE
Ga0207703_114047112	3300026035	Switchgrass Rhizosphere	MVRVSCRPGETPAHWCARATGDYVAARTAFQIEWGRLSAVDVSLLSVGYPTLDDGYDGAMDALEEADNERCEAKTELDRESTIAFRAAPRVKWKRGGRSGIYPE
Ga0207678_106309342	3300026067	Corn Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGAMDSLEDADHERSEAATELDRETLAMFRPAPRVKWRRGGRFGLYQR
Ga0207641_107577641	3300026088	Switchgrass Rhizosphere	MMSGVTRKMDETPAEWCARATGDYVAAMAAFQIEWQRLAVVSLSLLAAGYPTMDDGYDGALDSLEDADNERSEAVTELDRESLAAFRPAPRIRWRHAGRFGVYHE
Ga0207676_113612101	3300026095	Switchgrass Rhizosphere	GFFGLWVMMSGVTRKMDETPAEWCARATGDYVAAMMAFQIEWQRLAMVSMSRLAAGYPTLDDGYDSALDSLEDADNERSEAVKELDRESLAAFRPAPRIKWRHAGRFGIYHE
Ga0207683_103338491	3300026121	Miscanthus Rhizosphere	MSRAPGETPAQWCTRATGEYVLAWAAFQVEWHRLSVVGWSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELDRESVAAFRAAPR
Ga0207683_110005891	3300026121	Miscanthus Rhizosphere	MLTVACRPDETPAQWCAQATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLAMFRPAPRVKWRHGGRFALYRE
Ga0207698_114189762	3300026142	Corn Rhizosphere	MLTVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGAMDSLEDADNERSEAAAELDRESLAAF
Ga0209068_101202551	3300027894	Watersheds	MACMSQQPGESPAQWCSRATREYVAAVVAFQVEWQRLSTAGLSLLVAGYPTLDDGYDGAMDSLDDADNERTEATKELDRESLAAFRPAPRIKWRHGARFGVYHD
Ga0247820_103661862	3300028597	Soil	MASRPGETPTQWCARATGDYVAALAAFQIEWQRLALVSLSLVTAGYPTLDDGYDGAMDSVEDADNERSEAAAELNRQLLVAFRPAPRIKWRHGGRFGIHHERDPGRSGEPPVGPVEPETKHCH
Ga0247820_105768911	3300028597	Soil	MSRAPGETPAQWFTRATGEYALAFAAFQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELNRESGAAFRAAPRVKWRHGSRFGVYPSA
Ga0247820_107636121	3300028597	Soil	RGWALPEPRLKGPSSGFKERMLSVACRPDETPAQWCARATGDYIAAMATFQIEGHRLSIVGLSQLAAGYPTLDDGYDGALDSLEDADNERSEAATELDRETLATFRPAPRLKWRHGGRFALYRE
Ga0247820_112092331	3300028597	Soil	MIRTMTRRPNETSAQWCARATREYVDAWAAFQAEWQRLSMVSLSLLAAGYPTLDDGYDGALDSLEDADNERSEATTELDRESLAAFRPAPRFKWRQGGRFGIYH
Ga0247819_109939551	3300028608	Soil	MSRAPGETPAQWFTRATGEYALAFAAFQVEWHRLSLVGRSVLAAGYPTLDDDYDGAMDSLEEADSERTDAVNELTRESVAAFRAAPRVKWRRGSKFGVYPNE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103781

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences