Metagenome / Metatranscriptome Family F103784

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103784
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	60 residues
Representative Sequence	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT
Number of Associated Samples	77
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.26 %
% of genes near scaffold ends (potentially truncated)	21.78 %
% of genes from short scaffolds (< 2000 bps)	74.26 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.079 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (19.802 % of family members)
Environment Ontology (ENVO)	Unclassified (37.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.574 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.28% β-sheet: 0.00% Coil/Unstructured: 51.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00072	Response_reg	3.96
PF13564	DoxX_2	3.96
PF01435	Peptidase_M48	1.98
PF00069	Pkinase	1.98
PF10417	1-cysPrx_C	1.98
PF00196	GerE	0.99
PF14690	zf-ISL3	0.99
PF02567	PhzC-PhzF	0.99
PF13548	DUF4126	0.99
PF04055	Radical_SAM	0.99
PF02371	Transposase_20	0.99
PF00392	GntR	0.99
PF02586	SRAP	0.99
PF00271	Helicase_C	0.99
PF00005	ABC_tran	0.99
PF04203	Sortase	0.99
PF03372	Exo_endo_phos	0.99
PF02796	HTH_7	0.99
PF06452	CBM9_1	0.99
PF13147	Obsolete Pfam Family	0.99
PF07963	N_methyl	0.99
PF04545	Sigma70_r4	0.99
PF03466	LysR_substrate	0.99
PF00670	AdoHcyase_NAD	0.99
PF12412	DUF3667	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.92
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.99
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.99
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.99
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.99
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.08 %
Unclassified	root	N/A	7.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	77.23 %
Unclassified	root	N/A	7.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	69.31 %
Unclassified	root	N/A	7.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.31 %
Unclassified	root	N/A	7.92 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	1.98 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.31 %
Unclassified	root	N/A	7.92 %
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	1.98 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.31 %
Unclassified	root	N/A	7.92 %
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	1.98 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.31 %
Unclassified	root	N/A	7.92 %
unclassified Anaerolineaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae	1.98 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	69.31 %
Unclassified	root	N/A	7.92 %
Anaerolineaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1.98 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16900642	All Organisms → cellular organisms → Bacteria → Acidobacteria	2810	Open in IMG/M
2228664022\|INPgaii200_c1198717	Not Available	2540	Open in IMG/M
3300000955\|JGI1027J12803_104304466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1138	Open in IMG/M
3300003505\|JGIcombinedJ51221_10150691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300004101\|Ga0058896_1358850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300004633\|Ga0066395_10016471	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2857	Open in IMG/M
3300005434\|Ga0070709_10005206	All Organisms → cellular organisms → Bacteria → Acidobacteria	7035	Open in IMG/M
3300005434\|Ga0070709_10032557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3145	Open in IMG/M
3300005434\|Ga0070709_10052507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2562	Open in IMG/M
3300005434\|Ga0070709_10137889	Not Available	1673	Open in IMG/M
3300005434\|Ga0070709_11348500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300005434\|Ga0070709_11431618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300005435\|Ga0070714_100271404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1573	Open in IMG/M
3300005435\|Ga0070714_101060807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300005436\|Ga0070713_100314848	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300005436\|Ga0070713_101036166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300005439\|Ga0070711_101627902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300005526\|Ga0073909_10283851	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005526\|Ga0073909_10296933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300005533\|Ga0070734_10007284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	8964	Open in IMG/M
3300005542\|Ga0070732_10168337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1307	Open in IMG/M
3300005554\|Ga0066661_10454590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300005610\|Ga0070763_10416809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300005614\|Ga0068856_101155300	Not Available	791	Open in IMG/M
3300005764\|Ga0066903_100401571	Not Available	2255	Open in IMG/M
3300005764\|Ga0066903_100772907	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300005921\|Ga0070766_10812897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300006173\|Ga0070716_100330691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1071	Open in IMG/M
3300006173\|Ga0070716_100340867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1057	Open in IMG/M
3300006173\|Ga0070716_100476208	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	916	Open in IMG/M
3300006175\|Ga0070712_100045317	All Organisms → cellular organisms → Bacteria	3036	Open in IMG/M
3300006175\|Ga0070712_101460915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300006954\|Ga0079219_10676359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300009088\|Ga0099830_10657668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M
3300010043\|Ga0126380_10001506	All Organisms → cellular organisms → Bacteria → Acidobacteria	8886	Open in IMG/M
3300010046\|Ga0126384_11312513	Not Available	671	Open in IMG/M
3300010360\|Ga0126372_10130825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1962	Open in IMG/M
3300010361\|Ga0126378_12657823	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300010398\|Ga0126383_12841049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300010937\|Ga0137776_1683417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	850	Open in IMG/M
3300011120\|Ga0150983_10813810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2121	Open in IMG/M
3300012199\|Ga0137383_11107399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300012351\|Ga0137386_10150633	All Organisms → cellular organisms → Bacteria → Acidobacteria	1663	Open in IMG/M
3300012357\|Ga0137384_10088050	All Organisms → cellular organisms → Bacteria → Acidobacteria	2584	Open in IMG/M
3300012361\|Ga0137360_11715789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300012469\|Ga0150984_113780285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300012683\|Ga0137398_10612320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300012929\|Ga0137404_10040667	All Organisms → cellular organisms → Bacteria	3507	Open in IMG/M
3300012951\|Ga0164300_10998587	Not Available	538	Open in IMG/M
3300012961\|Ga0164302_11060628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300012984\|Ga0164309_10215492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1331	Open in IMG/M
3300015371\|Ga0132258_11071543	All Organisms → cellular organisms → Bacteria	2037	Open in IMG/M
3300015372\|Ga0132256_100085819	All Organisms → cellular organisms → Bacteria	3026	Open in IMG/M
3300020579\|Ga0210407_10075853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2528	Open in IMG/M
3300020579\|Ga0210407_10525315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300020580\|Ga0210403_10166884	All Organisms → cellular organisms → Bacteria → Acidobacteria	1803	Open in IMG/M
3300020580\|Ga0210403_10741629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300020581\|Ga0210399_10331278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1271	Open in IMG/M
3300020581\|Ga0210399_10594697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300020582\|Ga0210395_10196374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1513	Open in IMG/M
3300021168\|Ga0210406_10697603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300021474\|Ga0210390_10364429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1223	Open in IMG/M
3300021560\|Ga0126371_10006662	All Organisms → cellular organisms → Bacteria	10292	Open in IMG/M
3300021560\|Ga0126371_12934700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300022508\|Ga0222728_1000927	All Organisms → cellular organisms → Bacteria	2605	Open in IMG/M
3300025906\|Ga0207699_10169519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1460	Open in IMG/M
3300025906\|Ga0207699_10988783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300025915\|Ga0207693_11044543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300025916\|Ga0207663_10439122	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300025928\|Ga0207700_10031579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3765	Open in IMG/M
3300025939\|Ga0207665_10047766	All Organisms → cellular organisms → Bacteria	2870	Open in IMG/M
3300026309\|Ga0209055_1070417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1460	Open in IMG/M
3300026334\|Ga0209377_1301115	Not Available	534	Open in IMG/M
3300027073\|Ga0208366_1016278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300027826\|Ga0209060_10004067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	11728	Open in IMG/M
3300027842\|Ga0209580_10270736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300028906\|Ga0308309_10965072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300030730\|Ga0307482_1271707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300030847\|Ga0075405_11779307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300030945\|Ga0075373_10592420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300030966\|Ga0075383_10276795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300031047\|Ga0073995_11505517	Not Available	1073	Open in IMG/M
3300031057\|Ga0170834_104930104	All Organisms → cellular organisms → Bacteria → Acidobacteria	4649	Open in IMG/M
3300031231\|Ga0170824_100129029	All Organisms → cellular organisms → Bacteria	2664	Open in IMG/M
3300031231\|Ga0170824_118474584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300031231\|Ga0170824_120709544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300031231\|Ga0170824_124465236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300031446\|Ga0170820_11318760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300031446\|Ga0170820_12538634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300031474\|Ga0170818_112963785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300031474\|Ga0170818_114516396	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	928	Open in IMG/M
3300031590\|Ga0307483_1019392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300031715\|Ga0307476_10400027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300031718\|Ga0307474_10589619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300031718\|Ga0307474_10789009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300031753\|Ga0307477_10016941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4976	Open in IMG/M
3300031753\|Ga0307477_10024484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4122	Open in IMG/M
3300031823\|Ga0307478_11811506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300031962\|Ga0307479_10116633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2601	Open in IMG/M
3300032180\|Ga0307471_100723864	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300032205\|Ga0307472_101661066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.04%
Host-Associated	Host-Associated	3.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.05%
Plants	Host-Associated → Plants	3.96%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.05%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.37%
Loam	Environmental → Terrestrial → Soil → Loam	31.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	21.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.98%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.99%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	19.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.98%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004101	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030966	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031047	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02007590	2088090014	Soil	MTEHERDPVTVLCARIADEKNPVVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT
INPgaii200_11987173	2228664022	Soil	MASMTEHERDPVTVLCARIADEKNPVVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT
JGI1027J12803_1043044662	3300000955	Soil	MASMTEHERDPVTVLCARIADEKNPVVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT*
JGIcombinedJ51221_101506911	3300003505	Forest Soil	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLETLNNHQAKRSGFEGENMAT*
Ga0058896_13588502	3300004101	Forest Soil	EHERVMVTALCARIADEKNPFVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT*
Ga0066395_100164717	3300004633	Tropical Forest Soil	MNPMAPMSEHERRTVTVLCARIAGEKNPVIFRQLLIELDTLLEKLNSHQAECTGFEGENI
Ga0070709_100052066	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MASMTNHERQRVMALCALIAGEKNTVVFRELIIELGALLEELNNHQEKRTGFEGESMAI*
Ga0070709_100325574	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VQEMKSMALMNEHEREMLTALCARIADEKNPVVFRQLLVELDALLEKLNDHQAKRSGLEGDSMAT*
Ga0070709_100525073	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGRSTCKRNTMAFMTQHERQMVIGLCARIADEKNPVIFNHLLIELDALLERLSNHQPKLSGFEGDSTAT*
Ga0070709_101378891	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MITALCARIVDEKNPVVFGQLLIELDALLEKLNNPQAERTGFEGENMAT*
Ga0070709_113485002	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTEHERRMVTALCARISEEKNPVVFRQLLIELDALLEKLNNHETRHTGFEGDMTT*
Ga0070709_114316181	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MASMTEHEREMVTVLCARIADEKNPLVFRQLLIELDALLEKSKNRQAKRSGFEGENMAT*
Ga0070714_1002714042	3300005435	Agricultural Soil	MTSMREHERQMITALCARIVDEKNPVVFGQLLIELDALLEKLNNPQAERTGFEGENMAT*
Ga0070714_1010608071	3300005435	Agricultural Soil	MVVYVQEMKSMALMNEHEREMLTALCARIADEKNPVVFRQLLVELDALLEKLNDHQAKRSGLEGDSMAT*
Ga0070713_1003148482	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTEHERRMVTALCARISEEKNPVVFRQLLIELDALLEKLNNHQTRHTGFEG
Ga0070713_1010361661	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LMGRSTCKRNTMAFMTQHERQMVIGLCARIADEKNPVIFNHLLIELDALLERLSNHQPKLSGFEGDSTAT*
Ga0070711_1016279021	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MASMTEHEREMVTALCARIADEKNPFVFRQLLIELDALLEKLNNHHAKHSGFEGENMAT*
Ga0073909_102838512	3300005526	Surface Soil	MTPMTEHERQAVTKLCTRINEEKNCEVFTQLLIELEALLERLNNHEAKRSGFEGENMST*
Ga0073909_102969331	3300005526	Surface Soil	MSMNEHKHQRVIALCARIADEKNPVVFSQLLIELDALLEKLNDHQPNRSGFEGESMET*
Ga0070734_100072841	3300005533	Surface Soil	MASMTNHERQRVMALCALIAGEKNTVVFRELIIELGALLEELKNHQEKRTGFEGESMAT*
Ga0070732_101683372	3300005542	Surface Soil	MALMTAHEREMVTALCARIADEKNPVVFRQLLIELDALLGKLNNPQAKRSGFEGENMTT*
Ga0066661_104545902	3300005554	Soil	MVSMTEREREMVTALCARIADEKNPVVFRQLLIRLDALLEKLNSHQARRTGFEGESMSN*
Ga0070763_104168092	3300005610	Soil	MASMTEHEREMVTALCARIAYEKNPFVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT*
Ga0068856_1011553002	3300005614	Corn Rhizosphere	TMTSMREHERQMITALCARIVDEKNPVVFGQLLIELDALLEKLNNPQAERTGFEGENMAT
Ga0066903_1004015712	3300005764	Tropical Forest Soil	MNPMAPMSEHERRTVTVLCARIAGEKNPVIFRQLLIELDTLLEKLNSHQAECTGFEGENIAT*
Ga0066903_1007729071	3300005764	Tropical Forest Soil	VVVVYLQPMNPMAPMTEHERRTVTFLCARIAGEKNPIIFRQLLFELDALLEKLNSHQAECTGFEGENIAT*
Ga0070766_108128971	3300005921	Soil	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT*
Ga0070716_1003306911	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGGVRARVRSMTFMTQHERQTVTGLCARIADEKNPFVFSQLLIELDALLERLNYHQAKLSGFEGENMST*
Ga0070716_1003408673	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTQHERQMVTALCARISEEKNPVLFTQLLIELDALLEKLNNHHAKRTGFEGENMAT*
Ga0070716_1004762081	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MASMTEHEREMVTVLCARIADEKNPLVFRQLLIELDALLEKLKNRQAKRSGFEGENMAT*
Ga0070712_1000453176	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVTALCARISEEKNPVLFTQLLIELDALLEKLNNHHAKRTGFEGENMAT*
Ga0070712_1014609152	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGGARARNGYMTLMTQHERQMVIALCARIADEKNSIAFRQLLIELDALLEKLDNHQAKRSGFEGENMAT*
Ga0079219_106763593	3300006954	Agricultural Soil	MTEHERRTVTVLCARIAGEKNPVIFRQLLFELDALLEKLNSHQAEWTGFED
Ga0099830_106576681	3300009088	Vadose Zone Soil	MAFMTQHERQLVIGLCARIADEKNPVVFSQLLIELDALLERLLKNHQAKLSGFEGESMAT
Ga0126380_1000150610	3300010043	Tropical Forest Soil	VVVVYLQPMNPMAPMSEHERRTVTVLCARIAGEKNPVIFRQLLIELDTLLEKLNSHQAECTGFEGENIAT*
Ga0126384_113125132	3300010046	Tropical Forest Soil	VTVLCARIAGEKNPVIFRQLLFELDALLEKLNSHQAECTGFEGENIAT*
Ga0126372_101308255	3300010360	Tropical Forest Soil	VVVVYLQPMNPMAPMSEHERRTVTVLCARIAGEKNPVIFRQLLIELDTLLEKLNSHQAE
Ga0126378_126578231	3300010361	Tropical Forest Soil	MASMTEQERKMVTTLCARIAEEKNPVVFKQLLIELDELLERANNHQARRSGAEGENMAT*
Ga0126383_128410491	3300010398	Tropical Forest Soil	MASMTEQERRAVTVLCARIAGEKNPVIFRQLLFELDALLEKLNNHQAKRTEFEDENMAT*
Ga0137776_16834171	3300010937	Sediment	MVAHVQGMKSMESMTEHEREMVTALCARIADETNPFVFRELLVELDALLDKLNYHQAKRSGFEGENMAT*
Ga0150983_108138101	3300011120	Forest Soil	MTEHERVMVTALCARIADEKNPFVFQLLIELDALLEKLNNHQAKRSGFEGENMAT*
Ga0137383_111073991	3300012199	Vadose Zone Soil	TEREREMVTALCARIADEKNPVVFRQLLIRLDALLEKLNSHQARRTGFEGESMSN*
Ga0137386_101506332	3300012351	Vadose Zone Soil	MAFMTQHERQMVIGLCARIADEKNLVVFNQLLIELDALLERLLNNHQAKPSGFESENTAT
Ga0137384_100880502	3300012357	Vadose Zone Soil	MAFMTQHERQMVIGLCARIADEKNPVVFNQLLIELDALLERLLNNHQAKPSGFEGENMAT
Ga0137360_117157891	3300012361	Vadose Zone Soil	MTGHERQMVTALCARIADEKNPVVFRQLLIELDALLEKLNDHQATRTGFEGENMAT*
Ga0150984_1137802852	3300012469	Avena Fatua Rhizosphere	VQAMAMMNEHEHEMLTSLCTRIVDEKNPVIFRQLLIELDALLEKLNNNRGKRSVFEDERRSSDLHQS*
Ga0137398_106123201	3300012683	Vadose Zone Soil	MVISLCARIADERNPVVFSQLLIELDALLERLNNHQAKLSGFEGE
Ga0137404_100406672	3300012929	Vadose Zone Soil	MAFMTQHERQLVIGLCARIADEKNPVVFSQLLIELDALLERLLNNHQTKLSGFEGESMAT
Ga0164300_109985871	3300012951	Soil	MTPMTEHERQAFTKLCARINEEKNCEVFTQLLIELEALLERLNNHEAKRSVFEGENMST*
Ga0164302_110606281	3300012961	Soil	MREHERQMITALCARIVDEKNPVVFGQLLIELDALLEKLNNPQAERTGFEGENMAT*
Ga0164309_102154922	3300012984	Soil	MVVYVQEMKSMALMNEHEREMLTALCARIADEKNSIAFRQLLIELDALSENLNNHQAKRSGFEGENMST*
Ga0132258_110715431	3300015371	Arabidopsis Rhizosphere	TPMTEHERQAFTKLCARINEEKNCEVFTQLLIELEALLERLNNHEAKRSGFEGENMST*
Ga0132256_1000858193	3300015372	Arabidopsis Rhizosphere	MTPMTEHERQAFTKLCARINEEKNCEVFTQLLIELEALLERLNNHEAKRSGFEGENMST*
Ga0210407_100758534	3300020579	Soil	MASMTEHEREMVTALCARIVDEKNPFVFRQLLIELDALLEKLNNHQPKHSGFEGENMAT
Ga0210407_105253151	3300020579	Soil	MTQHERQMVTALCARISEEKNPVLFMQLLIELDALLEKLNNHHAKRTGFEGENMAT
Ga0210403_101668842	3300020580	Soil	MASMTEHEREMVTALCARIVDAKNPFVFRQLLIELDALLEKLKNRQPKHSGFEGENMAT
Ga0210403_107416292	3300020580	Soil	MTQHERQMVTALCARISEEKNPVLFMQLLIELDALLEKLNNHHVKRTGFEGENMAT
Ga0210399_103312781	3300020581	Soil	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT
Ga0210399_105946972	3300020581	Soil	QHERQMVTALCARISEEKNPVLFMQLLIELDALLEKLNNHHAKRTGFEGENMAT
Ga0210395_101963744	3300020582	Soil	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLETLNNHQAKRSGFEGENMAT
Ga0210406_106976031	3300021168	Soil	MGGVRARNEIMTEHEREMVTALCARIADEKSPVVFKQLLIELDALLENLNNHQAKRSGFEGENKAT
Ga0210390_103644291	3300021474	Soil	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLEKLNNHHAKRSGFEGENMAT
Ga0126371_100066623	3300021560	Tropical Forest Soil	VVVVYLQPMNPMAPMSEHERRTVTVLCARIAGEKNPVIFRQLLIELDTLLEKLNSHQAECTGFEGENIAT
Ga0126371_129347001	3300021560	Tropical Forest Soil	VVVVYLQPMNPMAPMTEHERRTVTFLCARIAGEKNPIIFRQLLFELDALLEKLNSHQAECTGFEGENIAT
Ga0222728_10009271	3300022508	Soil	MASMTEHEREMVTALCARIVDAKNPFVFRQLLIELDALLEKLNNHHAKRSGFEGENMAT
Ga0207699_101695191	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MASMTNHERQRVMALCALIAGEKNTVVFRELIIELGALLEELNNHQEKRTGFEGESMAI
Ga0207699_109887831	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MASMTEHEREMVTVLCARIADEKNPLVFRQLLIEFDALLEKLKNRQAKRSGFEGENMAT
Ga0207693_110445431	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGGARARNGYMTLMTQHERQMVIALCARIADEKNSIAFRQLLIELDALLEKLDNHQAKRSGFEGENMAT
Ga0207663_104391222	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MVTALCARIADEKNPFVFRQLLIELDALLEKSKNRQAKRSGFEGENMAT
Ga0207700_100315793	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTEHERRMVTALCARISEEKNPVVFRQLLIELDALLEKLNNHETRHTGFEGDMTT
Ga0207665_100477664	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MASMSEHEREMVTALCARIADEKNPVVFRQLLIELDALLEKLNNHHQSTRTGFEGENMAT
Ga0209055_10704172	3300026309	Soil	MVSMTEREREMVTALCARIADEKNPVVFRQLLIRLDALLEKLNSHQARRTGFEGESMSN
Ga0209377_13011151	3300026334	Soil	GMKTMVSMTEREREMVTALCARIADEKNPVVFRQLLIRLDALLEKLNSHQARRTGFEGESMSN
Ga0208366_10162782	3300027073	Forest Soil	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLETLNNHQAKRSGF
Ga0209060_1000406711	3300027826	Surface Soil	MASMTNHERQRVMALCALIAGEKNTVVFRELIIELGALLEELKNHQEKRTGFEGESMAT
Ga0209580_102707363	3300027842	Surface Soil	MALMTAHEREMVTALCARIADEKNPVVFRQLLIELDALLGKLNNPQAKRSGFEGENMTT
Ga0308309_109650722	3300028906	Soil	MASMTEHEREMVTALCARIAYEKNPFVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT
Ga0307482_12717071	3300030730	Hardwood Forest Soil	EHERQMVIALCARIADEKNPVVFGKLLIELDALLEKFNNHQPKRSGFEGENMAT
Ga0075405_117793072	3300030847	Soil	MKSMASMTEHERELVTALCARIADEKNPFVFSQLLIELEALLEKLNNHQAKRSGFEGENMAT
Ga0075373_105924202	3300030945	Soil	MASMTEHERELVTALCARIADEKNPFVFRQLLIELDALLEKLNNHQAKRSGFEGENMAT
Ga0075383_102767952	3300030966	Soil	MAFMTQYERQMVIALCARIADEKNPVVFSQLLIELDALLERLNNHQAKLSGFE
Ga0073995_115055172	3300031047	Soil	MASMTEHEREMVKALCARIADEKNPFVFSQLIIEMDALLEKLNNHQAKRSGFEGENMAT
Ga0170834_1049301045	3300031057	Forest Soil	MGWCTCKNNIMAFMAQHERQMVIRLCARIADEKNPVVFSQLLIELDALLERLLNNHQAKPSGFEGENMAT
Ga0170824_1001290295	3300031231	Forest Soil	VVYVHEQKMMAFMTQHERQMVIGLCARIADEKNPVVFSQLLIELDALLERLNNHQAKLSGFEGESTAT
Ga0170824_1184745841	3300031231	Forest Soil	MGGVRARNESMASLTEHERELVTALCAQIVDEKNPHVFSQLLIELDALLEKLNHHQAKRSGFEGENMAT
Ga0170824_1207095441	3300031231	Forest Soil	MASMTEHERELVTALCARIADEKNPLVFTQLLIELDALLEKLNNHQAKRSGFEGENM
Ga0170824_1244652361	3300031231	Forest Soil	MASMTEHERELVTALCARIADEKNPFVFSQLLVELDTLLEKLNNHQAKSSGFEGGNMVT
Ga0170820_113187601	3300031446	Forest Soil	MASMTEHERELVTALCARIADEKNSFVFSQLVIELDGLLEKLNNHQAKRSGFEGENMAT
Ga0170820_125386341	3300031446	Forest Soil	THLPSLMGGVRARNESMASLTEHERELVTALCAQIVDEKNPHVFSQLLIELDALLEKLNHHQAKRSGFEGENMAT
Ga0170818_1129637851	3300031474	Forest Soil	MASLTEHERELVTALCAQIVDEKNPHVFSQLLIELDALLEKLNHHQAKRSGFEGENMAT
Ga0170818_1145163962	3300031474	Forest Soil	MAFMTQYERQMVIALCARIADEKNPVVFSQLLIELDALLERLLNNHQAKPSGFEGENMAT
Ga0307483_10193922	3300031590	Hardwood Forest Soil	LMTAHEREMVTALCARIADEKNPVVFRQLLIELDALLGKLNNPQAKRSGFEGENMTT
Ga0307476_104000273	3300031715	Hardwood Forest Soil	VAYVQEMKSMAVMTEHERQMVIALCARIADEKNPVVFGKLLIELDALLEKFNNHQPKRSGFEGENMAT
Ga0307474_105896193	3300031718	Hardwood Forest Soil	MALMTAHEREMVTALCARIADEKNPVVFRQLLIELDALLGKLNNPQAKRSGFEGENMAT
Ga0307474_107890091	3300031718	Hardwood Forest Soil	VAYVQEMKSMAVMTEHERQMVIALCARIADEKNPVVFGKLLIELDALLEKFNHHQPKRSGFEGENMAT
Ga0307477_1001694110	3300031753	Hardwood Forest Soil	MASMTEHERVMVTALCARIADEKNPFVFRQLLIELDALLEKLNNHQAKRSEFEGENMAT
Ga0307477_100244843	3300031753	Hardwood Forest Soil	MVAYVQGMKSMVSMTEREREMATALCARIADEKNPVVFRQLLIRLDALLEKLNSHQARRTGFEGESMSN
Ga0307478_118115061	3300031823	Hardwood Forest Soil	MVAYVQGMKSMVSMTEREREMVTALCARIADEKNPVVFRQLLIRLDALLEKLNSHQARRTGFEGESMSN
Ga0307479_101166331	3300031962	Hardwood Forest Soil	MVAYVQGMKSMVSMTEREREMATALCARIADEKNPVVFRQLLIRLDALLEKLNSHQARRTGFEG
Ga0307471_1007238641	3300032180	Hardwood Forest Soil	MASMTEHEREMVTVLCARIADEKNPLVFRQLLIELDALLEKLKNHRPKRSGFEGENMAT
Ga0307472_1016610661	3300032205	Hardwood Forest Soil	MASMTEHEREMVTVLCARIADEKNPFVFSQLLIELDALLEKLNNHQAKRSGFEGENKAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103784

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences